<?xml version="1.0" encoding="ISO-8859-1" standalone="no"?>
<!DOCTYPE MAGE-ML SYSTEM "MAGE-ML.dtd">
<MAGE-ML  identifier="Gilberto test annotation">
  <AuditAndSecurity_package>
    <Contact_assnlist>
      <Organization identifier="thoracic_oncology_tumour_bank">
	<Roles_assnlist>
	  <OntologyEntry category="Roles" value="bio_material_provider">
	    <OntologyReference_assn>
	      <DatabaseEntry accession="#bio_material_provider">
		<Database_assnref>
		  <Database_ref identifier="MO"/>
		</Database_assnref>
	      </DatabaseEntry>
	    </OntologyReference_assn>
	  </OntologyEntry>
	</Roles_assnlist>
      </Organization>
    </Contact_assnlist>
  </AuditAndSecurity_package>
  <Description_package>
    <Database_assnlist>
      <Database identifier="MO" name="MGED Ontology" URI="http://mged.sourceforge.net/ontologies/MGEDontology.php"/>
      <Database identifier="DB:nci_thesaurus" URI="http://nciterms.nci.nih.gov">
    <Descriptions_assnlist>
      <Description>
	<Annotations_assnlist>
	  <OntologyEntry category="OrganismPartDatabase" value="NCI_thesaurus">
            <OntologyReference_assn>
              <DatabaseEntry accession="#NCI_thesaurus">
		<Database_assnref>
		  <Database_ref identifier="MO"/>
		</Database_assnref>
              </DatabaseEntry>
            </OntologyReference_assn>
	  </OntologyEntry>
	  <OntologyEntry category="CellTypeDatabase" value="NCI_thesaurus">
            <OntologyReference_assn>
              <DatabaseEntry accession="#NCI_thesaurus">
		<Database_assnref>
		  <Database_ref identifier="MO"/>
		</Database_assnref>
              </DatabaseEntry>
            </OntologyReference_assn>
	  </OntologyEntry>
	</Annotations_assnlist>
      </Description>
    </Descriptions_assnlist>
      </Database>
      <Database identifier="DB:ncbitax" URI="http://www.ncbi.nlm.nih.gov/Taxonomy/taxonomyhome.html/">
	<Descriptions_assnlist>
	  <Description>
	    <Annotations_assnlist>
	      <OntologyEntry category="OrganismDatabase" value="NCBI_taxonomy">
		<OntologyReference_assn>
		  <DatabaseEntry accession="http://mged.sourceforge.net/ontologies/MGEDontology.php#NCBI_taxonomy">
		    <Database_assnref>
		      <Database_ref identifier="MO"/>
		    </Database_assnref>
		  </DatabaseEntry>
		</OntologyReference_assn>
	      </OntologyEntry>
	    </Annotations_assnlist>
	  </Description>
	</Descriptions_assnlist>
      </Database>
    </Database_assnlist>
  </Description_package>
  <BioMaterial_package>
    <BioMaterial_assnlist>
      <!-- Hypothetical sample from patient with recurrent lung adenocarcinoma
	-->
      <BioSource identifier="BS:AD145.rlc.1" name="Individual=AD145; Sample=Recurrent Lung Carcinoma">
	<Descriptions_assnlist>
	  <Description text="frozen tumor tissue from patient AD145 with recurrent lung adenocarcinoma"/>
	</Descriptions_assnlist>
	<Characteristics_assnlist>
	  <!-- Identifier of the sample: AD145
	    -->
	  <OntologyEntry category="Individual" value="Individual">
	    <OntologyReference_assn>
	      <DatabaseEntry accession="#Individual">
		<Database_assnref>
		  <Database_ref identifier="MO"/>
		</Database_assnref>
	      </DatabaseEntry>
	    </OntologyReference_assn>
	    <Associations_assnlist>
	      <OntologyEntry category="has_ID" value="has_ID">
		<OntologyReference_assn>
		  <DatabaseEntry accession="#has_ID">
		    <Database_assnref>
		      <Database_ref identifier="MO"/>
		    </Database_assnref>
		  </DatabaseEntry>
		</OntologyReference_assn>
		<Associations_assnlist>
		  <OntologyEntry category="has_ID" value="AD145" />
		</Associations_assnlist>
	      </OntologyEntry>
	    </Associations_assnlist>
	  </OntologyEntry>
	  <!-- The gender of AD145's source:  male
       -->
	  <OntologyEntry category="Sex" value="male">
	    <OntologyReference_assn>
	      <DatabaseEntry accession="#male">
		<Database_assnref>
		  <Database_ref identifier="MO"/>
		</Database_assnref>
	      </DatabaseEntry>
	    </OntologyReference_assn>
	  </OntologyEntry>
	  <!-- The status of AD145 when sample was collected: premortem -->
	  <OntologyEntry category="OrganismStatus" value="premortem">
	    <OntologyReference_assn>
	      <DatabaseEntry accession="#premortem">
		<Database_assnref>
		  <Database_ref identifier="MO"/>
		</Database_assnref>
	      </DatabaseEntry>
	    </OntologyReference_assn>
	  </OntologyEntry>
	  <!-- Storage of sample from AD145: frozen. -->
	  <OntologyEntry category="BioSourceType" value="frozen_sample">
	    <OntologyReference_assn>
	      <DatabaseEntry accession="#frozen_sample">
		<Database_assnref>
		  <Database_ref identifier="MO"/>
		</Database_assnref>
	      </DatabaseEntry>
	    </OntologyReference_assn>
	  </OntologyEntry>
	  <!-- Source organism of AD145: human -->
	  <OntologyEntry category="species" value="Homo sapiens">
	    <OntologyReference_assn>
	      <DatabaseEntry accession="9606">
		<Database_assnref>
		  <Database_ref identifier="DB:ncbitax"/>
		</Database_assnref>
	      </DatabaseEntry>
	    </OntologyReference_assn>
	  </OntologyEntry>
	  <!-- NOTE: ALTERNATIVE FOR ORGANISM SOURCE -->
	  <!-- Source organism of AD145: human -->
	  <!--
	      <OntologyEntry category="Organism" value="Organism">
		<OntologyReference_assn>
		  <DatabaseEntry accession="#Organism">
		    <Database_assnref>
		      <Database_ref identifier="MO"/>
		    </Database_assnref>
		  </DatabaseEntry>
		</OntologyReference_assn>
		<Associations_assnlist>
		  <OntologyEntry category="has_value" value="has_value">
		    <OntologyReference_assn>
		      <DatabaseEntry accession="#has_value">
			<Database_assnref>
			  <Database_ref identifier="MO"/>
			</Database_assnref>
		      </DatabaseEntry>
		    </OntologyReference_assn>
		    <Associations_assnlist>
		      <OntologyEntry category="has_value" value="Homo sapiens" />
		    </Associations_assnlist>
		  </OntologyEntry>
		  <OntologyEntry category="has_accession" value="has_accession">
		    <OntologyReference_assn>
		      <DatabaseEntry accession="#has_accession">
			<Database_assnref>
			  <Database_ref identifier="MO"/>
			</Database_assnref>
		      </DatabaseEntry>
		    </OntologyReference_assn>
		    <Associations_assnlist>
		      <OntologyEntry category="has_accession" value="9606" />
		    </Associations_assnlist>
		  </OntologyEntry>
		  <OntologyEntry category="has_database" value="has_database">
		    <OntologyReference_assn>
		      <DatabaseEntry accession="#has_database">
			<Database_assnref>
			  <Database_ref identifier="MO"/>
			</Database_assnref>
		      </DatabaseEntry>
		    </OntologyReference_assn>
		    <Associations_assnlist>
		      <OntologyEntry category="OrganismDatabase" value="OrganismDatabase">
			<OntologyReference_assn>
			  <DatabaseEntry accession="#OrganismDatabase">
			    <Database_assnref>
			      <Database_ref identifier="MO"/>
			    </Database_assnref>
			  </DatabaseEntry>
			</OntologyReference_assn>
			<Associations_assnlist>
			  <OntologyEntry category="OrganismDatabase" value="NCBI_taxonomy">
			    <OntologyReference_assn>
			      <DatabaseEntry accession="#NCBI_taxonomy">
				<Database_assnref>
				  <Database_ref identifier="MO"/>
				</Database_assnref>
			      </DatabaseEntry>
			    </OntologyReference_assn>
			  </OntologyEntry>
			</Associations_assnlist>
		      </OntologyEntry>§
		    </Associations_assnlist>
		  </OntologyEntry>
		</Associations_assnlist>
	      </OntologyEntry>
	      -->
	  <!-- END NOTE: ALTERNATIVE FOR ORGANISM SOURCE -->
	  <!-- The developmental stage of AD145 at time of collection:  elderly (geriatric) -->
	  <OntologyEntry category="DevelopmentalStage" value="DevelopmentalStage">
	    <OntologyReference_assn>
	      <DatabaseEntry accession="#DevelopmentalStage">
		<Database_assnref>
		  <Database_ref identifier="MO"/>
		</Database_assnref>
	      </DatabaseEntry>
	    </OntologyReference_assn>
	    <Associations_assnlist>
	      <OntologyEntry category="has_value" value="has_value">
		<OntologyReference_assn>
		  <DatabaseEntry accession="#has_value">
		    <Database_assnref>
		      <Database_ref identifier="MO"/>
		    </Database_assnref>
		  </DatabaseEntry>
		</OntologyReference_assn>
		<Associations_assnlist>
		  <OntologyEntry category="has_value" value="elderly {geriatric}"/>
		</Associations_assnlist>
	      </OntologyEntry>
	      <OntologyEntry category="has_accession" value="has_accession">
		<OntologyReference_assn>
		  <DatabaseEntry accession="#has_accession">
		    <Database_assnref>
		      <Database_ref identifier="MO"/>
		    </Database_assnref>
		  </DatabaseEntry>
		</OntologyReference_assn>
		<Associations_assnlist>
		  <OntologyEntry category="has_accession" value="elderly {geriatric}"/>
		</Associations_assnlist>
	      </OntologyEntry>
	      <OntologyEntry category="has_database" value="has_database">
		<OntologyReference_assn>
		  <DatabaseEntry accession="#has_database">
		    <Database_assnref>
		      <Database_ref identifier="MO"/>
		    </Database_assnref>
		  </DatabaseEntry>
		</OntologyReference_assn>
		<Associations_assnlist>
		  <OntologyEntry category="DevelopmentalStageDatabase" value="DevelopmentalStageDatabase">
		    <OntologyReference_assn>
		      <DatabaseEntry accession="#DevelopmentalStageDatabase">
			<Database_assnref>
			  <Database_ref identifier="MO"/>
			</Database_assnref>
		      </DatabaseEntry>
		    </OntologyReference_assn>
		    <Associations_assnlist>
		      <OntologyEntry category="DevelopmentalStageDatabase" value="eVOC">
			<OntologyReference_assn>
			  <DatabaseEntry accession="#eVOC">
			    <Database_assnref>
			      <Database_ref identifier="MO"/>
			    </Database_assnref>
			  </DatabaseEntry>
			</OntologyReference_assn>
		      </OntologyEntry>
		    </Associations_assnlist>
		  </OntologyEntry>
		</Associations_assnlist>
	      </OntologyEntry>
	    </Associations_assnlist>
	  </OntologyEntry>
	  <!-- The cell type of AD145: Epithelial Cell.  
	       
	       The term was obtained from the NCI Thesaurus, has "Somatic Cell" as parent 
	       concept.  For purpose of example coding only, prefer using MO:CellType.
	    -->
	  <OntologyEntry category="Somatic Cell" value="Epithelial Cell">
	    <OntologyReference_assn>
	      <DatabaseEntry accession="C12578" URI="http://nciterms.nci.nih.gov/NCIBrowser/ConceptReport.jsp?dictionary=NCI+Thesaurus&amp;code=C12578">
		<Database_assnref>
		  <Database_ref identifier="DB:nci_thesaurus"/>
		</Database_assnref>
	      </DatabaseEntry>
	    </OntologyReference_assn>
	  </OntologyEntry>
	  <!-- Age of AD145's source: 88 years -->
	  <OntologyEntry category="Age" value="Age">
	    <OntologyReference_assn>
	      <DatabaseEntry accession="#Age">
		<Database_assnref>
		  <Database_ref identifier="MO"/>
		</Database_assnref>
	      </DatabaseEntry>
	    </OntologyReference_assn>
	    <Associations_assnlist>
	      <OntologyEntry category="has_measurement" value="has_measurement">
		<OntologyReference_assn>
		  <DatabaseEntry accession="#has_measurement">
		    <Database_assnref>
		      <Database_ref identifier="MO"/>
		    </Database_assnref>
		  </DatabaseEntry>
		</OntologyReference_assn>
		<Associations_assnlist>
		  <OntologyEntry category="Measurement" value="Measurement">
		    <OntologyReference_assn>
		      <DatabaseEntry accession="#Measurement">
			<Database_assnref>
			  <Database_ref identifier="MO"/>
			</Database_assnref>
		      </DatabaseEntry>
		    </OntologyReference_assn>
		    <Associations_assnlist>
		      <OntologyEntry category="has_value" value="has_value">
			<OntologyReference_assn>
			  <DatabaseEntry accession="#has_value">
			    <Database_assnref>
			      <Database_ref identifier="MO"/>
			    </Database_assnref>
			  </DatabaseEntry>
			</OntologyReference_assn>
			<Associations_assnlist>
			  <OntologyEntry category="has_value" value="88" />
			</Associations_assnlist>
		      </OntologyEntry>
		      <OntologyEntry category="has_units" value="has_units">
			<OntologyReference_assn>
			  <DatabaseEntry accession="#has_units">
			    <Database_assnref>
			      <Database_ref identifier="MO"/>
			    </Database_assnref>
			  </DatabaseEntry>
			</OntologyReference_assn>
			<Associations_assnlist>
			  <OntologyEntry category="Unit" value="Unit">
			    <OntologyReference_assn>
			      <DatabaseEntry accession="#Unit">
				<Database_assnref>
				  <Database_ref identifier="MO"/>
				</Database_assnref>
			      </DatabaseEntry>
			    </OntologyReference_assn>
			    <Associations_assnlist>
			      <OntologyEntry category="TimeUnit" value="TimeUnit">
				<OntologyReference_assn>
				  <DatabaseEntry accession="#TimeUnit">
				    <Database_assnref>
				      <Database_ref identifier="MO"/>
				    </Database_assnref>
				  </DatabaseEntry>
				</OntologyReference_assn>
				<Associations_assnlist>
				  <OntologyEntry category="TimeUnit" value="years">
				    <OntologyReference_assn>
				      <DatabaseEntry accession="#years">
					<Database_assnref>
					  <Database_ref identifier="MO"/>
					</Database_assnref>
				      </DatabaseEntry>
				    </OntologyReference_assn>
				  </OntologyEntry>
				</Associations_assnlist>
			      </OntologyEntry>
			    </Associations_assnlist>
			  </OntologyEntry>
			</Associations_assnlist>
		      </OntologyEntry>
		    </Associations_assnlist>
		  </OntologyEntry>
		</Associations_assnlist>
	      </OntologyEntry>
	      <OntologyEntry category="initial_time_point" value="initial_time_point">
		<OntologyReference_assn>
		  <DatabaseEntry accession="#initial_time_point">
		    <Database_assnref>
		      <Database_ref identifier="MO"/>
		    </Database_assnref>
		  </DatabaseEntry>
		</OntologyReference_assn>
		<Associations_assnlist>
		  <OntologyEntry category="IntialTimePoint" value="IntialTimePoint">
		    <OntologyReference_assn>
		      <DatabaseEntry accession="#IntialTimePoint">
			<Database_assnref>
			  <Database_ref identifier="MO"/>
			</Database_assnref>
		      </DatabaseEntry>
		    </OntologyReference_assn>
		    <Associations_assnlist>
		      <OntologyEntry category="IntialTimePoint" value="birth">
			<OntologyReference_assn>
			  <DatabaseEntry accession="#birth">
			    <Database_assnref>
			      <Database_ref identifier="MO"/>
			    </Database_assnref>
			  </DatabaseEntry>
			</OntologyReference_assn>
		      </OntologyEntry>
		    </Associations_assnlist>
		  </OntologyEntry>
		</Associations_assnlist>
	      </OntologyEntry>
	    </Associations_assnlist>
	  </OntologyEntry>
	  <!-- Current disease state: Recurrent Lung Adenocarcinoma stage IIIa -->
	  <OntologyEntry category="DiseaseState" value="DiseasState">
	    <OntologyReference_assn>
	      <DatabaseEntry accession="#DiseaseState">
		<Database_assnref>
		  <Database_ref identifier="MO"/>
		</Database_assnref>
	      </DatabaseEntry>
	    </OntologyReference_assn>
	    <Associations_assnlist>
	      <OntologyEntry category="has_value" value="has_value">
		<OntologyReference_assn>
		  <DatabaseEntry accession="#has_value">
		    <Database_assnref>
		      <Database_ref identifier="MO"/>
		    </Database_assnref>
		  </DatabaseEntry>
		</OntologyReference_assn>
		<Associations_assnlist>
		  <OntologyEntry category="has_value" value="Recurrent Lung Adenocarcinoma" >
		    <OntologyReference_assn>
		      <DatabaseEntry accession="C8757">
			<Database_assnref>
			  <Database_ref identifier="DB:nci_thesaurus"/>
			</Database_assnref>
		      </DatabaseEntry>
		    </OntologyReference_assn>
		  </OntologyEntry>  
		</Associations_assnlist>
	      </OntologyEntry>
	      <OntologyEntry category="has_accession" value="has_accession">
		<OntologyReference_assn>
		  <DatabaseEntry accession="#has_accession">
		    <Database_assnref>
		      <Database_ref identifier="MO"/>
		    </Database_assnref>
		  </DatabaseEntry>
		</OntologyReference_assn>
		<Associations_assnlist>
		  <OntologyEntry category="has_accession" value="C8757" />
		</Associations_assnlist>
	      </OntologyEntry>
	      <OntologyEntry category="has_database" value="has_database">
		<OntologyReference_assn>
		  <DatabaseEntry accession="#has_database">
		    <Database_assnref>
		      <Database_ref identifier="MO"/>
		    </Database_assnref>
		  </DatabaseEntry>
		</OntologyReference_assn>
		<Associations_assnlist>
		  <OntologyEntry category="DiseaseStateDatabase" value="DiseaseStateDatabase">
		    <OntologyReference_assn>
		      <DatabaseEntry accession="#DiseaseStateDatabase">
			<Database_assnref>
			  <Database_ref identifier="MO"/>
			</Database_assnref>
		      </DatabaseEntry>
		    </OntologyReference_assn>
		    <Associations_assnlist>
		      <OntologyEntry category="DiseaseStateDatabase" value="NCI_Thesaurus">
			<OntologyReference_assn>
			  <DatabaseEntry accession="#NCI_Thesaurus">
			    <Database_assnref>
			      <Database_ref identifier="MO"/>
			    </Database_assnref>
			  </DatabaseEntry>
			</OntologyReference_assn>
		      </OntologyEntry>
		    </Associations_assnlist>
		  </OntologyEntry>
		</Associations_assnlist>
	      </OntologyEntry>
	      <OntologyEntry category="has_disease_staging" value="has_disease_staging">
		<OntologyReference_assn>
		  <DatabaseEntry accession="#has_disease_staging">
		    <Database_assnref>
		      <Database_ref identifier="MO"/>
		    </Database_assnref>
		  </DatabaseEntry>
		</OntologyReference_assn>
		<Associations_assnlist>
		  <OntologyEntry category="DiseaseStaging" value="DiseaseStaging">
		    <OntologyReference_assn>
		      <DatabaseEntry accession="#DiseaseStaging">
			<Database_assnref>
			  <Database_ref identifier="MO"/>
			</Database_assnref>
		      </DatabaseEntry>
		    </OntologyReference_assn>
		    <Associations_assnlist>
		      <OntologyEntry category="has_value" value="has_value">
			<OntologyReference_assn>
			  <DatabaseEntry accession="#has_value">
			    <Database_assnref>
			      <Database_ref identifier="MO"/>
			    </Database_assnref>
			  </DatabaseEntry>
			</OntologyReference_assn>
			<Associations_assnlist>
			  <OntologyEntry category="has_value" value="Stage IIIA">
			    <OntologyReference_assn>
			      <DatabaseEntry accession="C27977">
				<Database_assnref>
				  <Database_ref identifier="DB:nci_thesaurus"/>
				</Database_assnref>
			      </DatabaseEntry>
			    </OntologyReference_assn>
			  </OntologyEntry>
			</Associations_assnlist>
		      </OntologyEntry>
		      <OntologyEntry category="has_accession" value="has_accession">
			<OntologyReference_assn>
			  <DatabaseEntry accession="#has_accession">
			    <Database_assnref>
			      <Database_ref identifier="MO"/>
			    </Database_assnref>
			  </DatabaseEntry>
			</OntologyReference_assn>
			<Associations_assnlist>
			  <OntologyEntry category="has_accession" value="C27977" />
			</Associations_assnlist>
		      </OntologyEntry>
		      <OntologyEntry category="has_database" value="has_database">
			<OntologyReference_assn>
			  <DatabaseEntry accession="#has_database">
			    <Database_assnref>
			      <Database_ref identifier="MO"/>
			    </Database_assnref>
			  </DatabaseEntry>
			</OntologyReference_assn>
			<Associations_assnlist>
			  <OntologyEntry category="DiseaseStagingDatabase" value="DiseaseStagingDatabase">
			    <OntologyReference_assn>
			      <DatabaseEntry accession="#DiseaseStagingDatabase">
				<Database_assnref>
				  <Database_ref identifier="MO"/>
				</Database_assnref>
			      </DatabaseEntry>
			    </OntologyReference_assn>
			    <Associations_assnlist>
			      <OntologyEntry category="DiseaseStagingDatabase" value="NCI_disease_staging_database">
				<OntologyReference_assn>
				  <DatabaseEntry accession="#NCI_disease_staging_database">
				    <Database_assnref>
				      <Database_ref identifier="MO"/>
				    </Database_assnref>
				  </DatabaseEntry>
				</OntologyReference_assn>
			      </OntologyEntry>
			    </Associations_assnlist>
			  </OntologyEntry>
			</Associations_assnlist>
		      </OntologyEntry>
		    </Associations_assnlist>
		  </OntologyEntry>
		</Associations_assnlist>
	      </OntologyEntry>
	    </Associations_assnlist>
	  </OntologyEntry>
	  <!-- Clinical history of AD145's source:  Lung Adenocarcinoma stage IIIa -->
	  <OntologyEntry category="ClinicalHistory" value="ClinicalHistory">
	    <OntologyReference_assn>
	      <DatabaseEntry accession="#ClinicalHistory">
		<Database_assnref>
		  <Database_ref identifier="MO"/>
		</Database_assnref>
	      </DatabaseEntry>
	    </OntologyReference_assn>
	    <Associations_assnlist>
	      <OntologyEntry category="has_prior_disease_state" value="has_prior_disease_state">
		<OntologyReference_assn>
		  <DatabaseEntry accession="#has_prior_disease_state">
		    <Database_assnref>
		      <Database_ref identifier="MO"/>
		    </Database_assnref>
		  </DatabaseEntry>
		</OntologyReference_assn>
		<Associations_assnlist>
		  <OntologyEntry category="DiseaseState" value="DiseaseState">
		    <OntologyReference_assn>
		      <DatabaseEntry accession="#DiseaseState">
			<Database_assnref>
			  <Database_ref identifier="MO"/>
			</Database_assnref>
		      </DatabaseEntry>
		    </OntologyReference_assn>
		    <Associations_assnlist>
		      <OntologyEntry category="has_value" value="has_value">
			<OntologyReference_assn>
			  <DatabaseEntry accession="#has_value">
			    <Database_assnref>
			      <Database_ref identifier="MO"/>
			    </Database_assnref>
			  </DatabaseEntry>
			</OntologyReference_assn>
			<Associations_assnlist>
			  <OntologyEntry category="has_value" value="Lung Adenocarcinoma">
			    <OntologyReference_assn>
			      <DatabaseEntry accession="C3512">
				<Database_assnref>
				  <Database_ref identifier="DB:nci_thesaurus"/>
				</Database_assnref>
			      </DatabaseEntry>
			    </OntologyReference_assn>
			  </OntologyEntry>
			</Associations_assnlist>
		      </OntologyEntry>
		      <OntologyEntry category="has_accession" value="C3512">
			<OntologyReference_assn>
			  <DatabaseEntry accession="#has_accession">
			    <Database_assnref>
			      <Database_ref identifier="MO"/>
			    </Database_assnref>
			  </DatabaseEntry>
			</OntologyReference_assn>
			<Associations_assnlist>
			  <OntologyEntry category="has_accession" value="C3512" />
			</Associations_assnlist>
		      </OntologyEntry>
		      <OntologyEntry category="has_database" value="has_database">
			<OntologyReference_assn>
			  <DatabaseEntry accession="#has_database">
			    <Database_assnref>
			      <Database_ref identifier="MO"/>
			    </Database_assnref>
			  </DatabaseEntry>
			</OntologyReference_assn>
			<Associations_assnlist>
			  <OntologyEntry category="DiseaseStateDatabase" value="DiseaseStateDatabase">
			    <OntologyReference_assn>
			      <DatabaseEntry accession="#DiseaseStateDatabase">
				<Database_assnref>
				  <Database_ref identifier="MO"/>
				</Database_assnref>
			      </DatabaseEntry>
			    </OntologyReference_assn>
			    <Associations_assnlist>
			      <OntologyEntry category="DiseaseStateDatabase" value="NCI_Thesaurus">
				<OntologyReference_assn>
				  <DatabaseEntry accession="#NCI_Thesaurus">
				    <Database_assnref>
				      <Database_ref identifier="MO"/>
				    </Database_assnref>
				  </DatabaseEntry>
				</OntologyReference_assn>
			      </OntologyEntry>
			    </Associations_assnlist>
			  </OntologyEntry>
			</Associations_assnlist>
		      </OntologyEntry>
		      <OntologyEntry category="has_disease_staging" value="has_disease_staging">
			<OntologyReference_assn>
			  <DatabaseEntry accession="#has_disease_staging">
			    <Database_assnref>
			      <Database_ref identifier="MO"/>
			    </Database_assnref>
			  </DatabaseEntry>
			</OntologyReference_assn>
			<Associations_assnlist>
			  <OntologyEntry category="DiseaseStaging" value="DiseaseStaging">
			    <OntologyReference_assn>
			      <DatabaseEntry accession="#DiseaseStaging">
				<Database_assnref>
				  <Database_ref identifier="MO"/>
				</Database_assnref>
			      </DatabaseEntry>
			    </OntologyReference_assn>
			    <Associations_assnlist>
			      <OntologyEntry category="has_value" value="has_value">
				<OntologyReference_assn>
				  <DatabaseEntry accession="#has_value">
				    <Database_assnref>
				      <Database_ref identifier="MO"/>
				    </Database_assnref>
				  </DatabaseEntry>
				</OntologyReference_assn>
				<Associations_assnlist>
				  <OntologyEntry category="has_value" value="Stage IIIA">
				    <OntologyReference_assn>
				      <DatabaseEntry accession="C27977">
					<Database_assnref>
					  <Database_ref identifier="DB:nci_thesaurus"/>
					</Database_assnref>
				      </DatabaseEntry>
				    </OntologyReference_assn>
				  </OntologyEntry>
				</Associations_assnlist>
			      </OntologyEntry>
			      <OntologyEntry category="has_accession" value="has_accession">
				<OntologyReference_assn>
				  <DatabaseEntry accession="#has_accession">
				    <Database_assnref>
				      <Database_ref identifier="MO"/>
				    </Database_assnref>
				  </DatabaseEntry>
				</OntologyReference_assn>
				<Associations_assnlist>
				  <OntologyEntry category="has_accession" value="C27977" />
				</Associations_assnlist>
			      </OntologyEntry>
			      <OntologyEntry category="has_database" value="has_database">
				<OntologyReference_assn>
				  <DatabaseEntry accession="#has_database">
				    <Database_assnref>
				      <Database_ref identifier="MO"/>
				    </Database_assnref>
				  </DatabaseEntry>
				</OntologyReference_assn>
				<Associations_assnlist>
				  <OntologyEntry category="DiseaseStagingDatabase" value="DiseaseStagingDatabase">
				    <OntologyReference_assn>
				      <DatabaseEntry accession="#DiseaseStagingDatabase">
					<Database_assnref>
					  <Database_ref identifier="MO"/>
					</Database_assnref>
				      </DatabaseEntry>
				    </OntologyReference_assn>
				    <Associations_assnlist>
				      <OntologyEntry category="DiseaseStagingDatabase" value="NCI_disease_staging_database">
					<OntologyReference_assn>
					  <DatabaseEntry accession="#NCI_disease_staging_database">
					    <Database_assnref>
					      <Database_ref identifier="MO"/>
					    </Database_assnref>
					  </DatabaseEntry>
					</OntologyReference_assn>
				      </OntologyEntry>
				    </Associations_assnlist>
				  </OntologyEntry>
				</Associations_assnlist>
			      </OntologyEntry>
			    </Associations_assnlist>
			  </OntologyEntry>
			</Associations_assnlist>
		      </OntologyEntry>
<!-- NOT PART OF THE DISEASESTATE TERM! but needs to be added -->
<!--
		      <OntologyEntry category="has_disease_location" value="has_disease_location">
			<OntologyReference_assn>
			  <DatabaseEntry accession="#has_disease_location">
			    <Database_assnref>
			      <Database_ref identifier="MO"/>
			    </Database_assnref>
			  </DatabaseEntry>
			  </OntologyReference_assn>
			<Associations_assnlist>
			  <OntologyEntry category="DiseaseLocation" value="DiseaseLocation">
			    <OntologyReference_assn>
			      <DatabaseEntry accession="#DiseaseLocation">
				<Database_assnref>
				  <Database_ref identifier="MO"/>
				</Database_assnref>
			      </DatabaseEntry>
			    </OntologyReference_assn>
			    <Associations_assnlist>
			      <OntologyEntry category="DiseaseLocation" value="primary_site">
				<OntologyReference_assn>
				  <DatabaseEntry accession="#primary_site">
				    <Database_assnref>
				      <Database_ref identifier="MO"/>
				    </Database_assnref>
				  </DatabaseEntry>
				</OntologyReference_assn>
			      </OntologyEntry>
			    </Associations_assnlist>
			  </OntologyEntry>
			</Associations_assnlist>
		      </OntologyEntry>
		      -->
		    </Associations_assnlist>
		  </OntologyEntry>
		</Associations_assnlist>
	      </OntologyEntry>
	    </Associations_assnlist>
	  </OntologyEntry>
	  <!-- BEGIN new Cigarette Smoking -->
	  <OntologyEntry category="Tobacco Smoking" value="Cigarette Smoking">
	    <OntologyReference_assn>
	      <DatabaseEntry accession="C18270" URI="http://nciterms.nci.nih.gov:80/NCIBrowser/ConceptReport.jsp?dictionary=NCI+Thesaurus&amp;code=C18270">
		<Database_assnref>
		  <Database_ref identifier="BD:nci_thesaurus"/>
		</Database_assnref>
	      </DatabaseEntry>
	    </OntologyReference_assn>
	    <Associations_assnlist>
	      <OntologyEntry category="General Modifier" value="Amount">
		<OntologyReference_assn>
		  <DatabaseEntry accession="C25417" URI="http://nciterms.nci.nih.gov:80/NCIBrowser/ConceptReport.jsp?dictionary=NCI+Thesaurus&amp;code=C25417">
		    <Database_assnref>
		      <Database_ref identifier="DB:nci_thesaurus"/>
		    </Database_assnref>
		  </DatabaseEntry>
		</OntologyReference_assn>
		<Associations_assnlist>
		  <OntologyEntry category="pack years" value="20"/>
		</Associations_assnlist>
	      </OntologyEntry>
	    </Associations_assnlist>
	  </OntologyEntry>
	  <!-- END new Cigarette Smoking -->
	</Characteristics_assnlist>
	<!-- The material type of the sample is "organism part" -->
	<MaterialType_assn>
	  <OntologyEntry category="MaterialType" value="organism_part">
	    <OntologyReference_assn>
	      <DatabaseEntry accession="#organism_part">
		<Database_assnref>
		  <Database_ref identifier="MO"/>
		</Database_assnref>
	      </DatabaseEntry>
	    </OntologyReference_assn>
	  </OntologyEntry>
	</MaterialType_assn>
	<SourceContact_assnreflist>
	  <Organization_ref identifier="thoracic_oncology_tumour_bank"/>
	</SourceContact_assnreflist>
      </BioSource>
    </BioMaterial_assnlist>
  </BioMaterial_package>
</MAGE-ML>
