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Mapping terms between MO and Ontology for Biomedical Investigations (OBI)
(Total 330 terms mapped)

MO Term (v1.3.1.1)Parent in MOOBI Term (2012 Summer Release)
_32PLabelCompoundCHEBI_37972 phosphorus-32
_33PLabelCompoundCHEBI_37973 phosphorus-33
acclimatizationComplexAction, ExperimentalProtocolTypeOBI_0600011 acclimatization
agar_stabBiosourceTypeOBI_0000981 agar stab specimen
ageBioMaterialCharacteristicCategory OBI_0001167 age measurement datum
AgeBioMaterialCharacteristicsOBI_0001167 age measurement datum
Age + beginning_of_stageInitialTimePointOBI_0001167 age measurement datum
Age + birthInitialTimePointOBI_0001169 age since birth measurement datum
Age + coitusInitialTimePointOBI_0001165 age since coitus measurement datum
Age + eclosionInitialTimePointOBI_0001163 age since eclosion measurement datum
Age + egg_layingInitialTimePointOBI_0001159 age since egg laying measurement datum
Age + germinationInitialTimePointOBI_0001161 age since germination measurement datum
Age + plantingInitialTimePointOBI_0001156 age since planting measurement datum
Age + sowingInitialTimePointOBI_0001164 age since sowing measurement datum
alexa_532LabelCompoundCHEBI_51756 Alexa Fluor 532
alexa_546LabelCompoundCHEBI_51760 Alexa Fluor 546
all_pairsMethodologicalDesignOBI_0001440 all pairs design
AlleleIndividualGeneticCharacteristicsOBI_0001352 allele information
aneuploidPloidyPATO_0001385 aneuploid
antibodyPhysicalBioSequenceTypeGO_0042571 immunoglobulin complex, circulating
array_manufacturerRolesOBI_0001069 array manufacturer role
array_manufacturingExperimentalProtocolTypeOBI_0000457 manufacturing
array_platform_variation_designMethodologicalDesignOBI_0001252 array platform variation design
array_scannerHardwareTypeOBI_0400104 array scanner
arrayerHardwareTypeOBI_0400105 arrayer
atmosphereGrowthConditionOBI_0001498 atmosphere
binding_site_identification_designBioMolecularAnnotation, TechnologicalDesignOBI_0001425 protein binding site identification design
biological_replicateQualityControlDescriptionType, ReplicateDescriptionTypeOBI_0000198 biological replicate role
biomaterial_providerBioMaterialCharacteristicCategoryOBI_0000018 material supplier role
biomaterial_providerBioMaterialCharacteristicCategory, RolesOBI_0000018 material supplier role
BioMaterialPurityBioMaterialCharacteristicsPATO_0001339 biomaterial purity
BioSourceProviderBioMaterialCharacteristicsOBI_0000018 material supplier role
BiosourceTypeBioMaterialCharacteristicsOBI_0001472 specimen with known storage state
biotinLabelCompoundCHEBI_15956 biotin
bloodDeprecatedTermsOBI_0000655 blood specimen
ccVolumeUnitUO_0000097 cubic centimeter
cellMaterialTypeOBI_0001468 cell specimen
cell_component_comparison_designBiologicalPropertyOBI_0001205 cell component comparison design
cell_cycle_designBiologicalPropertyOBI_0001409 cell cycle design
cell_lineBioMaterialCharacteristicCategory OBI_0100056 immortalized cell line culture
cell_lysateMaterialType OBI_1000036 cell lysate
cell_typeBioMaterialCharacteristicCategoryCL_0000000 cell
cell_type_comparison_designBiologicalPropertyOBI_0001411 cell type comparison design
CellLineBioMaterialCharacteristics, OntologyEntryOBI_0100056 immortalized cell line culture
CellTypeBioMaterialCharacteristics, OntologyEntryCL_0000000 cell
cellular_modification_designPerturbationalDesignOBI_0001358 post-transcriptional modification design
cellular_process_designBiologicalPropertyOBI_0001365 cellular process design
CellularComponentBioMaterialCharacteristics, OntologyEntry GO_0005575 cellular_component
centrifugeHardwareTypeOBI_0400106 centrifuge
cfu_per_mlConcentrationUnitOtherUO_0000213 colony forming unit per milliliter
chromosomal_substitutionGeneticModificationOBI_0001150 chromosomal substitution
clinical_history_designEpidemiologicalDesignOBI_0001337 clinical history design
clinical_treatmentBioMaterialCharacteristicCategory OGMS_0000090 treatment
ClinicalHistoryEnvironmentalHistoryOGMS_0000015 clinical history
ClinicalTreatmentBioMaterialCharacteristics, OntologyEntry OGMS_0000090 treatment
clustered_dataDerivedBioAssayTypeOBI_0000648 clustered data set
cmDistanceUnitUO_0000015 centimeter
comparative_genome_hybridization_designBioMolecularAnnotation, TechnologicalDesignOBI_0001197 comparative genome hybridization by array design
CompoundOntologyEntry, BiologicalFactorCategoryCHEBI_23367 molecular entity
compound_treatment_designPerturbationalDesignOBI_0000951 compound treatment design
computerHardwareTypeOBI_0400107 computer
concentrateAtomicActionOBI_0600041 concentrate
ConcentrationUnitUnitUO_0000051 concentration unit
ConcentrationUnitOtherConcentrationUnitUO_0000051 concentration unit
CultivarStrainOrLineOBI_0001185 selectively maintained organism
Cy3LabelCompoundCHEBI_37987 Cy3 dye
Cy5LabelCompoundCHEBI_37989 Cy5 dye
cytoplasmic_RNAMaterialTypeOBI_0000876 cytoplasmic RNA extract
data_coderRolesOBI_0000068 reporting party role
daysTimeUnitUO_0000033 day
degrees_CTemperatureUnitUO_0000027 degree Celsius
degrees_FTemperatureUnitUO_0000195 degree Fahrenheit
development_or_differentiation_designBiologicalPropertyOBI_0001328 organism development design
development_or_differentiation_designBiologicalPropertyOBI_0001429 cell development or differentiation design
developmental_stageBioMaterialCharacteristicCategoryUBERON_0000105 life cycle stage
DevelopmentalStageOntologyEntry, BioMaterialCharacteristicsUBERON_0000105 life cycle stage
diploidPloidyPATO_0001394 diploid
disease_stagingBioMaterialCharacteristicCategory OBI_0000278 disease stage
disease_stateBioMaterialCharacteristicCategory OBI_1110055 disease
disease_state_designEpidemiologicalDesign, PerturbationalDesignOBI_0001293 disease state design
DiseaseStagingBioMaterialCharacteristics, OntologyEntry OBI_0000278 disease stage
DiseaseStateBioMaterialCharacteristics, OntologyEntry OBI_1110055 disease
dissectComplexAction, ExperimentalProtocolTypeOBI_0001504 dissection
DistanceUnitUnitUO_0000001 length unit
DistanceUnitOtherDistanceUnitUO_0000001 length unit
dlVolumeUnitUO_0000209 deciliter
DNAMaterialTypeOBI_0600022 DNA extract
DNAPolymerTypeCHEBI_16991 deoxyribonucleic acids
DNA_sequencerHardwareTypeOBI_0400103 DNA sequencer
dose_response_designPerturbationalDesignOBI_0001418 dose response design
dye_swap_designMethodologicalDesignOBI_0500017 dye swap design
dye_swap_mergeDataTransformationProtocolTypeOBI_0200055 dye swap merge
dye_swap_quality_controlQualityControlDescriptionTypeOBI_0001142 dye swap quality control role
EcotypeStrainOrLineOBI_0001185 selectively maintained organism
environmental_history_designEnvironmentalHistoryOBI_0001226 environmental history design
ex_vivo_designMethodologicalDesignOBI_0001211 ex vivo design
ExperimentDesignTypeExperimentPackageOBI_0500000 study design
extractBioSampleTypeOBI_0000423 extract
FSexPATO_0001347 F mating type
F_minusSexPATO_0001348 F minus mating type
family_history_designEpidemiologicalDesignOBI_0001329 family history design
feature_extractionExperimentalProtocolTypeOBI_0001028 feature extraction
feedingDeliveryMethodOBI_0000694 animal feeding
femaleSexPATO_0000383 female
freeze_dried_sampleBiosourceTypeOBI_0000965 lyophilized specimen
fresh_sampleBiosourceTypeOBI_0000971 fresh specimen
frozen_sampleBiosourceTypeOBI_0000922 frozen specimen
frozen_storagePreservationTypeOBI_0000915 freezing storage
gMassUnitUO_0000021 gram
g_per_LConcentrationUnitUO_0000175 gram per liter
gene_knock_inGeneticModificationOBI_0001149 gene knock in
gene_knock_outGeneticModificationOBI_0001148 gene knock out
genetic_modificationComplexAction, ExperimentalProtocolTypeOBI_0600043 genetic transformation
genetic_modification_designPerturbationalDesignOBI_0001460 genetic modification design
GeneticModificationBioMaterialCharacteristicsOBI_0600043 genetic transformation
genomic_DNAMaterialTypeOBI_0000834 high molecular weight DNA extract
GenotypeIndividualGeneticCharacteristicsOBI_0001305 genotype information
genotyping_designBioMolecularAnnotationOBI_0001387 genotyping by array design
GeographicLocationEnvironmentalHistory, OntologyEntryGAZ_00000448 geographical location
gram_percentConcentrationUnitUO_0000208 gram per deciliter
growComplexAction, ExperimentalProtocolTypeOBI_0001147 cell culture expansion
growth_condition_designPerturbationalDesignOBI_0000985 growth condition intervention design
GrowthConditionEnvironmentalHistoryOBI_0000997 growth environment
haploidPloidyPATO_0001375 haploid
harvestComplexAction, ExperimentalProtocolTypeOBI_0001483 cell collecting
heating_blockHardwareTypeOBI_0400108 heating block
hermaphroditeSexPATO_0001340 hermaphrodite
histological_slide_preparationComplexAction, ExperimentalProtocolTypeOBI_0000341 histological sample preparation
HistologyBioMaterialCharacteristics, OntologyEntry OBI_0600020 histology
homogenizerHardwareTypeOBI_0400109 homogenizer
HostEnvironmentalHistoryOBI_0000725 host role
hoursTimeUnitUO_0000032 hour
hybridizationComplexAction, ExperimentalProtocolTypeOBI_0302903 nucleic acid hybridization
hybridization_chamberHardwareTypeOBI_0400110 hybridization chamber
hybridization_stationHardwareTypeOBI_0400111 hybridization station
ImageDescriptionPackageIAO_0000101 image
image_acquisitionExperimentalProtocolTypeOBI_0001031 array image acquisition
imprinting_designBiologicalPropertyOBI_0001408 imprinting design
in_vitro_designMethodologicalDesignOBI_0001285 in vitro design
in_vivo_designMethodologicalDesignOBI_0001199 in vivo design
individualBioMaterialCharacteristicCategory OBI_0001141 individual organism identifier
IndividualBioMaterialCharacteristicsOBI_0001141 individual organism identifier
individual_genetic_characteristicBioMaterialCharacteristicCategoryOBI_0001404 genetic characteristics information
individual_genetic_characteristics_designBiologicalPropertyOBI_0001448 individual genetic characteristics comparison design
IndividualGeneticCharacteristicsBioMaterialCharacteristicsOBI_0001404 genetic characteristics information
induced_mutationGeneticModificationOBI_0001154 induced mutation
infect/inoculateDeprecatedTerms/ComplexAction,ExperimentalProtocolTypeOBI_1110021 infection
injury_designPerturbationalDesignOBI_0001374 injury design
innate_behavior_designBiologicalPropertyOBI_0001202 innate behavior design
institutionRolesOBI_0000245 organization
intramuscular_injectionDeliveryMethodOBI_0000934 intramuscular injection
intraperitoneal_injectionDeliveryMethodOBI_0000281 intraperitoneal injection
intravenousDeliveryMethodOBI_0000994 intravenous injection
investigatorRolesOBI_0000202 investigation agent role
irradiateComplexAction, ExperimentalProtocolTypeOBI_0302889 irradiation
journal_articlePublicationTypeIAO_0000013 journal article
kgMassUnitUO_0000009 kilogram
LVolumeUnitUO_0000099 liter
LabeledExtractBioMaterialOBI_0001143 labeled nucleic acid extract
labelingComplexAction, ExperimentalProtocolTypeOBI_0600038 labeling
linear_amplificationComplexAction, ExperimentalProtocolTypeOBI_0001494 linear amplification
linlog_normalizationNormalizationDescriptionTypeOBI_0200021 linlog transformation
linlog_transformationDataTransformationProtocolTypeOBI_0200021 linlog transformation
liquid_handlerHardwareTypeOBI_0400112 liquid handler
loess_global_normalizationDataTransformationProtocolTypeOBI_0200023 loess global transformation
loess_group_normalizationDataTransformationProtocolTypeOBI_0200024 loess group transformation
loess_normalizationNormalizationDescriptionTypeOBI_0200071 loess transformation
loess_scaled_group_normalizationDataTransformationProtocolTypeOBI_0200025 loess scale group transformation
loop_designMethodologicalDesignOBI_0500009 loop design
lowess_global_normalizationDataTransformationProtocolTypeOBI_0001481 lowess global transformation
lowess_group_normalizationDataTransformationProtocolTypeOBI_0001474 lowess group transformation
lowess_normalizationDataTransformationProtocolTypeOBI_0001477 lowess transformation
MConcentrationUnitUO_0000062 molar
mDistanceUnitUO_0000008 meter
maleSexPATO_0000384 male
MassUnitUnitUO_0000002 mass unit
MassUnitOtherMassUnit UO_0000002 mass unit
mating_type_aSexPATO_0001341 a mating type (yeast)
mating_type_alphaSexPATO_0001344 alpha mating type (yeast)
mating_type_h_minusSexPATO_0001345 h minus
mating_type_h_plusSexPATO_0001346 h plus
mediaEnvironmentalFactorCategoryOBI_0000079 culture medium
MediaGrowthConditionOBI_0000079 culture medium
mgMassUnitUO_0000022 milligram
mg_per_mlConcentrationUnitUO_0000176 milligram per milliliter
minutesTimeUnitUO_0000031 minute
mixed_sexSexPATO_0001338 mixed sex
mlVolumeUnitUO_0000098 milliliter
mL_per_LConcentrationUnitUO_0000207 milliliter per liter
mMConcentrationUnitUO_0000063 millimolar
mmDistanceUnitUO_0000016 millimeter
molQuantityUnitUO_0000013 mole
monthsTimeUnitUO_0000035 month
moving_averageDataTransformationProtocolTypeOBI_0200056 moving average
msTimeUnitUO_0000028 millisecond
multiple_testing_correctionHigherLevelAnalysisProtocolTypeOBI_0200089 multiple testing correction method
ngMassUnitUO_0000024 nanogram
nlVolumeUnitUO_0000102 nanoliter
nmDistanceUnitUO_0000018 nanometer
nmolQuantityUnitUO_0000041 nanomole
normalization_testing_designMethodologicalDesignOBI_0001214 normalization testing design
nuclear_RNA MaterialTypeOBI_0000862 nuclear RNA extract
nucleic_acid_extractionComplexAction, ExperimentalProtocolTypeOBI_0666667 nucleic acid extraction
nutrientsEnvironmentalFactorCategoryOBI_0000204 nutrient role
NutrientsGrowthCondition OBI_0000204 nutrient role
oligo_synthesizerHardwareTypeOBI_0400113 oligonucleotide synthesizer
operator_variation_designMethodologicalDesignOBI_0001195 operator variation design
operon_identification_designBioMolecularAnnotationOBI_0001432 operon identification design
optimization_designMethodologicalDesignOBI_0001401 protocol optimization design
organellar_RNAMaterialType OBI_0000899 organellar RNA extract
organismBioMaterialCharacteristicCategory OBI_0100026 organism
OrganismBioMaterialCharacteristics, OntologyEntry OBI_0100026 organism
organism_partBioMaterialCharacteristicCategoryCARO_0001008 gross anatomical part
organism_partMaterialTypeOBI_0001479 tissue specimen
organism_part_comparison_designBiologicalPropertyOBI_0001422 organism part comparison design
organism_statusBioMaterialCharacteristicCategoryOBI_0001506 specimen with pre- or post-mortem status
organism_status_designBiologicalPropertyOBI_0001377 organism status comparison design
OrganismPartBioMaterialCharacteristics, OntologyEntryCARO_0001008 gross anatomical part
OrganismStatusBioMaterialCharacteristicsOBI_0001506 specimen with pre- or post-mortem status
OrganizationContactOBI_0000245 organization
OtherUnitUnitIAO_0000003 measurement unit label
paraffin_sampleBiosourceTypeOBI_0000950 paraffin specimen
pathogenicity_designPerturbationalDesignOBI_0001454 pathogenicity design
PCR_amplificationComplexAction/ExperimentalProtocolTypeOBI_0000415 polymerase chain reaction
percent_vol_per_volConcentrationUnitUO_0000165 volume percentage
percent_weight_per_volConcentrationUnitUO_0000164 mass volume percentage
percent_weight_per_weightConcentrationUnitUO_0000163 mass percentage
PerturbationalDesignExperimentDesignTypeOBI_0000115 intervention design
pgMassUnitUO_0000025 picogram
pHConcentrationUnitOtherUO_0000196 pH
PhenotypeBioMaterialCharacteristics, OntologyEntry OGMS_0000023 phenotype
plVolumeUnitUO_0000103 picoliter
plasmidDeprecatedTermsOBI_0000430 plasmid
PloidyIndividualGeneticCharacteristicsPATO_0001374 ploidy
pMConcentrationUnitUO_0000066 picomolar
pmolQuantityUnitUO_0000042 picomole
polyA_RNAMaterialType OBI_0000869 polyA RNA extract
polyploidPloidyPATO_0001377 polyploid
poolComplexAction, ExperimentalProtocolTypeOBI_0600016 pooling specimens
population_densityEnvironmentalFactorCategoryOBI_0000181 population
postmortemOrganismStatusOBI_0000902 post mortem specimen
premortemOrganismStatusOBI_0000873 pre-mortem specimen
proteinMaterialTypeOBI_0000894 protein extract
proteinPolymerTypePR_000000001 protein
ProtocolProtocolPackageOBI_0000272 protocol
purifyComplexAction, ExperimentalProtocolTypeOBI_0001505 purification
quality_control_testing_designMethodologicalDesignOBI_0001336 quality control testing design
quantile_normalizationNormalizationDescriptionTypeOBI_0200028 quantile transformation
QuantityUnitUnitUO_0000006 substance unit
QuantityUnitOtherQuantityUnitUO_0000006 substance unit
real_time_PCR_quality_controlQualityControlDescriptionTypeOBI_0001166 validation by real time PCR design
reference_designMethodologicalDesignOBI_0500010 reference design
replicate_analysisDataTransformationProtocolTypeOBI_0200057 replicate analysis
replicate_designMethodologicalDesignOBI_0500018 replicate design
reverse_transcription_PCR_quality_controlQualityControlDescriptionTypeOBI_0001162 validation by reverse transcription PCR design
RNAMaterialTypeOBI_0000880 RNA extract
RNAPolymerTypeCHEBI_33697 ribonucleic acids
RNA_stability_designBioMolecularAnnotationOBI_0001306 RNA stability design
RolesAuditAndSecurityPackagesnap#Role role
sacrificeComplexAction, ExperimentalProtocolTypeOBI_0000919 animal euthanization
secondsTimeUnitUO_0000010 second
self_vs_self_designMethodologicalDesignOBI_0500019 self vs self design
sexBioMaterialCharacteristicCategoryPATO_0000047 biological sex
SexBioMaterialCharacteristicsPATO_0000047 biological sex
sex_designBiologicalPropertyOBI_0001426 sex comparison design
SoftwareProtocolPackageIAO_0000010 software
soilMediaENVO_00001998 soil
sonicatorHardwareTypeOBI_0400114 sonicator
species_designBiologicalPropertyOBI_0001310 species comparison design
spectrophotometerHardwareTypeOBI_0400115 spectrophotometer
spike_quality_controlQualityControlDescriptionTypeOBI_0001140 spike-in quality control role
spinAtomicActionOBI_0302886 centrifugation
splitComplexAction/ExperimentalProtocolTypeOBI_0600018 material portioning
stimulus_or_stress_designPerturbationalDesignOBI_0001396 stimulus or stress design
storeComplexAction/ExperimentalProtocolTypeOBI_0302893 storage
strain_or_lineBioMaterialCharacteristicCategoryOBI_0001185 selectively maintained organism
strain_or_line_designBiologicalPropertyOBI_0001464 strain comparison design
StrainOrLineOntologyEntry/BioMaterialCharacteristicsOBI_0001185 selectively maintained organism
subcutaneousDeliveryMethodOBI_0000954 subcutaneous injection
submitterRolesOBI_0000068 reporting party role
synthetic_DNAMaterialTypeOBI_0000809 amplified DNA
synthetic_DNAMaterialTypeOBI_0000908 labeled DNA extract
synthetic_RNAMaterialTypeOBI_0000921 labeled RNA extract
TargetedCellTypeOntologyEntry/BioMaterialCharacteristicsCL_0000000 cell
technical_replicateQualityControlDescriptionType, ReplicateDescriptionTypeOBI_0000249 technical replicate role
temperatureEnvironmentalFactorCategoryPATO_0000146 temperature
TemperatureGrowthCondition PATO_0000146 temperature
TemperatureUnitUnitUO_0000005 temperature unit
TestBioMaterialCharacteristicsOBI_0000070 assay
thermal_cyclerHardwareTypeOBI_0400116 thermal cycler
tiling_path_designBioMolecularAnnotationOBI_0001427 transcription profiling by tiling array design
time_series_designMethodologicalDesignOBI_0500020 time series design
timepointComplexActionOBI_0001508 sampling time measurement datum
TimeUnitUnitUO_0000003 time unit
TimeUnitOtherTimeUnitUO_0000003 time unit
total_intensity_normalization_pairedDataTransformationProtocolTypeOBI_0200027 total intensity transformation paired
total_intensity_normalization_singleDataTransformationProtocolTypeOBI_0200026 total intensity transformation single
total_RNAMaterialType OBI_0000895 total RNA extract
transcript_identification_designBioMolecularAnnotation, TechnologicalDesignOBI_0001290 transcription profiling by array design
transfectComplexAction, ExperimentalProtocolTypeOBI_0001152 transfection
transfectionGeneticModificationOBI_0001152 transfection
TransformationBioAssayDataPackageOBI_0200000 data transformation
translational_bias_designBioMolecularAnnotationOBI_0001259 translational bias design
TreatmentBioMaterialPackageOBI_0000995 administration of material to specimen
tumor_gradingBioMaterialCharacteristicCategory OBI_0600002 tumor grading
TumorGradingBioMaterialCharacteristics, OntologyEntry OBI_0600002 tumor grading
ugMassUnitUO_0000023 microgram
ulVolumeUnitUO_0000101 microliter
uMConcentrationUnitUO_0000064 micromolar
umDistanceUnitUO_0000017 micrometer
umolQuantityUnitUO_0000039 micromole
UnitMeasurementPackageIAO_0000003 measurement unit label
unknown_sexSexOBI_0000858 record of unknown sex
urineBiosourceTypeOBI_0000651 urine specimen
usTimeUnitUO_0000029 microsecond
vacuum_dryerHardwareTypeOBI_0400117 vacuum dryer
vectorDeprecatedTermsOBI_0000737 cloning vector
virusMaterialType NCBITaxon_10239 Viruses
VolumeUnitUnitUO_0000095 volume unit
VolumeUnitOtherVolumeUnitUO_0000095 volume unit
vortexerHardwareTypeOBI_0400118 vortexer
waitAtomicActionOBI_0000045 waiting
washComplexAction/ExperimentalProtocolTypeOBI_0302888 washing
wash_stationHardwareTypeOBI_0400119 microarray wash station
waterbathHardwareTypeOBI_0400155 water bath
weeksTimeUnitUO_0000034 week
whole_organismMaterialType OBI_0000680 whole organism preparation
wild_typeAlleleOBI_0001369 wild type allele information
wild_typeGenotypeOBI_0001294 wild type organism genotype information
yearsTimeUnitUO_0000036 year


Last updated October 8, 2012

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