org.biomage.ArrayDesign
Class ReporterGroup

java.lang.Object
  |
  +--org.biomage.Common.Extendable
        |
        +--org.biomage.Common.Describable
              |
              +--org.biomage.Common.Identifiable
                    |
                    +--org.biomage.ArrayDesign.DesignElementGroup
                          |
                          +--org.biomage.ArrayDesign.ReporterGroup

All Implemented Interfaces:

HasAuditTrail, HasDescriptions, HasPropertySets, HasReporters, HasSecurity, HasSpecies, HasTypes, java.io.Serializable

public class ReporterGroup

extends DesignElementGroup

implements java.io.Serializable, HasReporters

Allows specification of the type of Reporter Design Element.

See Also:

Serialized Form

Nested Class Summary

Nested classes inherited from class org.biomage.Interface.HasReporters

HasReporters.Reporters_list

Nested classes inherited from class org.biomage.Interface.HasTypes

HasTypes.Types_list

Nested classes inherited from class org.biomage.Interface.HasAuditTrail

HasAuditTrail.AuditTrail_list

Nested classes inherited from class org.biomage.Interface.HasDescriptions

HasDescriptions.Descriptions_list

Nested classes inherited from class org.biomage.Interface.HasPropertySets

HasPropertySets.PropertySets_list

Field Summary

protected HasReporters.Reporters_list

reporters The reporters that belong to this group.

Fields inherited from class org.biomage.ArrayDesign.DesignElementGroup

species, types

Fields inherited from class org.biomage.Common.Describable

auditTrail, descriptions, security

Fields inherited from class org.biomage.Common.Extendable

propertySets

Constructor Summary

ReporterGroup()
Default constructor.

ReporterGroup(org.xml.sax.Attributes atts)
Attribute constructor.

Method Summary

void	addToReporters(int position, Reporter reporter) Method to add Reporter at position to Reporters_list
void	addToReporters(Reporter reporter) Method to add Reporter to Reporters_list
Reporter	getFromReporters(int position) Method to get Reporter from Reporters_list
HasReporters.Reporters_list	getReporters() Get method for reporters
void	removeElementAtFromReporters(int position) Method to remove by position from Reporters_list
void	removeFromReporters(Reporter reporter) Method to remove first Reporter from Reporters_list
void	setReporters(HasReporters.Reporters_list reporters) Set method for reporters
void	writeAssociations(java.io.Writer out) writeAssociations This method is responsible for assembling the association data into XML.
void	writeAttributes(java.io.Writer out) writeAttributes This method is responsible for assembling the attribute data into XML.
void	writeMAGEML(java.io.Writer out) writeMAGEML This method is responsible for assembling the attribute and association data into XML.

Methods inherited from class org.biomage.ArrayDesign.DesignElementGroup

addToTypes, addToTypes, getFromTypes, getSpecies, getTypes, removeElementAtFromTypes, removeFromTypes, setSpecies, setTypes

Methods inherited from class org.biomage.Common.Identifiable

getIdentifier, getName, setIdentifier, setName

Methods inherited from class org.biomage.Common.Describable

addToAuditTrail, addToAuditTrail, addToDescriptions, addToDescriptions, getAuditTrail, getDescriptions, getFromAuditTrail, getFromDescriptions, getSecurity, removeElementAtFromAuditTrail, removeElementAtFromDescriptions, removeFromAuditTrail, removeFromDescriptions, setAuditTrail, setDescriptions, setSecurity

Methods inherited from class org.biomage.Common.Extendable

addToPropertySets, addToPropertySets, getFromPropertySets, getPropertySets, removeElementAtFromPropertySets, removeFromPropertySets, setPropertySets

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

reporters

protected HasReporters.Reporters_list reporters

The reporters that belong to this group.

Constructor Detail

ReporterGroup

public ReporterGroup()

Default constructor.

ReporterGroup

public ReporterGroup(org.xml.sax.Attributes atts)

Attribute constructor. Looks up the attributes in the parameter and casts them from strings appropriately

Method Detail

writeMAGEML

public void writeMAGEML(java.io.Writer out)
                 throws java.io.IOException

writeMAGEML This method is responsible for assembling the attribute and association data into XML. It creates the object tag and then calls the writeAttributes and writeAssociation methods.

Overrides:

writeMAGEML in class DesignElementGroup

java.io.IOException

writeAttributes

public void writeAttributes(java.io.Writer out)
                     throws java.io.IOException

writeAttributes This method is responsible for assembling the attribute data into XML. It calls the super method to write out all attributes of this class and it's ancestors.

Overrides:

writeAttributes in class DesignElementGroup

java.io.IOException

writeAssociations

public void writeAssociations(java.io.Writer out)
                       throws java.io.IOException

writeAssociations This method is responsible for assembling the association data into XML. It calls the super method to write out all associations of this class's ancestors.

Overrides:

writeAssociations in class DesignElementGroup

java.io.IOException

setReporters

public void setReporters(HasReporters.Reporters_list reporters)

Set method for reporters

Specified by:

setReporters in interface HasReporters

getReporters

public HasReporters.Reporters_list getReporters()

Get method for reporters

Specified by:

getReporters in interface HasReporters

Returns:

value of the attribute

addToReporters

public void addToReporters(Reporter reporter)

Method to add Reporter to Reporters_list

Specified by:

addToReporters in interface HasReporters

addToReporters

public void addToReporters(int position,
                           Reporter reporter)

Method to add Reporter at position to Reporters_list

Specified by:

addToReporters in interface HasReporters

getFromReporters

public Reporter getFromReporters(int position)

Method to get Reporter from Reporters_list

Specified by:

getFromReporters in interface HasReporters

removeElementAtFromReporters

public void removeElementAtFromReporters(int position)

Method to remove by position from Reporters_list

Specified by:

removeElementAtFromReporters in interface HasReporters

removeFromReporters

public void removeFromReporters(Reporter reporter)

Method to remove first Reporter from Reporters_list

Specified by:

removeFromReporters in interface HasReporters