org.biomage.ArrayDesign
Class ZoneLayout

java.lang.Object
  |
  +--org.biomage.Common.Extendable
        |
        +--org.biomage.ArrayDesign.ZoneLayout

All Implemented Interfaces:

HasDistanceUnit, HasPropertySets, java.io.Serializable

public class ZoneLayout

extends Extendable

implements java.io.Serializable, HasDistanceUnit

Specifies the layout of features in a rectangular grid.

See Also:

Serialized Form

Nested Class Summary

Nested classes inherited from class org.biomage.Interface.HasPropertySets

HasPropertySets.PropertySets_list

Field Summary

protected DistanceUnit

distanceUnit Unit of the ZoneLayout attributes.

Fields inherited from class org.biomage.Common.Extendable

propertySets

Constructor Summary

ZoneLayout()
Default constructor.

ZoneLayout(org.xml.sax.Attributes atts)
Attribute constructor.

Method Summary

DistanceUnit	getDistanceUnit() Get method for distanceUnit
int	getNumFeaturesPerCol() Get method for numFeaturesPerCol
int	getNumFeaturesPerRow() Get method for numFeaturesPerRow
float	getSpacingBetweenCols() Get method for spacingBetweenCols
float	getSpacingBetweenRows() Get method for spacingBetweenRows
void	setDistanceUnit(DistanceUnit distanceUnit) Set method for distanceUnit
void	setNumFeaturesPerCol(int numFeaturesPerCol) Set method for numFeaturesPerCol
void	setNumFeaturesPerRow(int numFeaturesPerRow) Set method for numFeaturesPerRow
void	setSpacingBetweenCols(float spacingBetweenCols) Set method for spacingBetweenCols
void	setSpacingBetweenRows(float spacingBetweenRows) Set method for spacingBetweenRows
void	writeAssociations(java.io.Writer out) writeAssociations This method is responsible for assembling the association data into XML.
void	writeAttributes(java.io.Writer out) writeAttributes This method is responsible for assembling the attribute data into XML.
void	writeMAGEML(java.io.Writer out) writeMAGEML This method is responsible for assembling the attribute and association data into XML.

Methods inherited from class org.biomage.Common.Extendable

addToPropertySets, addToPropertySets, getFromPropertySets, getPropertySets, removeElementAtFromPropertySets, removeFromPropertySets, setPropertySets

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

distanceUnit

protected DistanceUnit distanceUnit

Unit of the ZoneLayout attributes.

Constructor Detail

ZoneLayout

public ZoneLayout()

Default constructor.

ZoneLayout

public ZoneLayout(org.xml.sax.Attributes atts)

Attribute constructor. Looks up the attributes in the parameter and casts them from strings appropriately

Method Detail

writeMAGEML

public void writeMAGEML(java.io.Writer out)
                 throws java.io.IOException

writeMAGEML This method is responsible for assembling the attribute and association data into XML. It creates the object tag and then calls the writeAttributes and writeAssociation methods.

Overrides:

writeMAGEML in class Extendable

java.io.IOException

writeAttributes

public void writeAttributes(java.io.Writer out)
                     throws java.io.IOException

writeAttributes This method is responsible for assembling the attribute data into XML. It calls the super method to write out all attributes of this class and it's ancestors.

Overrides:

writeAttributes in class Extendable

java.io.IOException

writeAssociations

public void writeAssociations(java.io.Writer out)
                       throws java.io.IOException

writeAssociations This method is responsible for assembling the association data into XML. It calls the super method to write out all associations of this class's ancestors.

Overrides:

writeAssociations in class Extendable

java.io.IOException

setNumFeaturesPerRow

public void setNumFeaturesPerRow(int numFeaturesPerRow)

Set method for numFeaturesPerRow

getNumFeaturesPerRow

public int getNumFeaturesPerRow()

Get method for numFeaturesPerRow

Returns:

value of the attribute

setNumFeaturesPerCol

public void setNumFeaturesPerCol(int numFeaturesPerCol)

Set method for numFeaturesPerCol

getNumFeaturesPerCol

public int getNumFeaturesPerCol()

Get method for numFeaturesPerCol

Returns:

value of the attribute

setSpacingBetweenRows

public void setSpacingBetweenRows(float spacingBetweenRows)

Set method for spacingBetweenRows

getSpacingBetweenRows

public float getSpacingBetweenRows()

Get method for spacingBetweenRows

Returns:

value of the attribute

setSpacingBetweenCols

public void setSpacingBetweenCols(float spacingBetweenCols)

Set method for spacingBetweenCols

getSpacingBetweenCols

public float getSpacingBetweenCols()

Get method for spacingBetweenCols

Returns:

value of the attribute

setDistanceUnit

public void setDistanceUnit(DistanceUnit distanceUnit)

Set method for distanceUnit

Specified by:

setDistanceUnit in interface HasDistanceUnit

getDistanceUnit

public DistanceUnit getDistanceUnit()

Get method for distanceUnit

Specified by:

getDistanceUnit in interface HasDistanceUnit

Returns:

value of the attribute