org.biomage.Experiment
Class FactorValue

java.lang.Object
  |
  +--org.biomage.Common.Extendable
        |
        +--org.biomage.Common.Describable
              |
              +--org.biomage.Common.Identifiable
                    |
                    +--org.biomage.Experiment.FactorValue

All Implemented Interfaces:

HasAuditTrail, HasDescriptions, HasExperimentalFactor, HasMeasurement, HasPropertySets, HasSecurity, java.io.Serializable

public class FactorValue

extends Identifiable

implements java.io.Serializable, HasExperimentalFactor, HasMeasurement

The value for a ExperimentalFactor

See Also:

Serialized Form

Nested Class Summary

Nested classes inherited from class org.biomage.Interface.HasAuditTrail

HasAuditTrail.AuditTrail_list

Nested classes inherited from class org.biomage.Interface.HasDescriptions

HasDescriptions.Descriptions_list

Nested classes inherited from class org.biomage.Interface.HasPropertySets

HasPropertySets.PropertySets_list

Field Summary

protected ExperimentalFactor	experimentalFactor The pairing of BioAssay FactorValues with the ExperimentDesign ExperimentFactor.
protected Measurement	measurement The measured value for this factor.

Fields inherited from class org.biomage.Common.Describable

auditTrail, descriptions, security

Fields inherited from class org.biomage.Common.Extendable

propertySets

Constructor Summary

FactorValue()
Default constructor.

FactorValue(org.xml.sax.Attributes atts)
Attribute constructor.

Method Summary

ExperimentalFactor	getExperimentalFactor() Get method for experimentalFactor
Measurement	getMeasurement() Get method for measurement
void	setExperimentalFactor(ExperimentalFactor experimentalFactor) Set method for experimentalFactor
void	setMeasurement(Measurement measurement) Set method for measurement
void	writeAssociations(java.io.Writer out) writeAssociations This method is responsible for assembling the association data into XML.
void	writeAttributes(java.io.Writer out) writeAttributes This method is responsible for assembling the attribute data into XML.
void	writeMAGEML(java.io.Writer out) writeMAGEML This method is responsible for assembling the attribute and association data into XML.

Methods inherited from class org.biomage.Common.Identifiable

getIdentifier, getName, setIdentifier, setName

Methods inherited from class org.biomage.Common.Describable

addToAuditTrail, addToAuditTrail, addToDescriptions, addToDescriptions, getAuditTrail, getDescriptions, getFromAuditTrail, getFromDescriptions, getSecurity, removeElementAtFromAuditTrail, removeElementAtFromDescriptions, removeFromAuditTrail, removeFromDescriptions, setAuditTrail, setDescriptions, setSecurity

Methods inherited from class org.biomage.Common.Extendable

addToPropertySets, addToPropertySets, getFromPropertySets, getPropertySets, removeElementAtFromPropertySets, removeFromPropertySets, setPropertySets

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

experimentalFactor

protected ExperimentalFactor experimentalFactor

The pairing of BioAssay FactorValues with the ExperimentDesign ExperimentFactor.

measurement

protected Measurement measurement

The measured value for this factor.

Constructor Detail

FactorValue

public FactorValue()

Default constructor.

FactorValue

public FactorValue(org.xml.sax.Attributes atts)

Attribute constructor. Looks up the attributes in the parameter and casts them from strings appropriately

Method Detail

writeMAGEML

public void writeMAGEML(java.io.Writer out)
                 throws java.io.IOException

writeMAGEML This method is responsible for assembling the attribute and association data into XML. It creates the object tag and then calls the writeAttributes and writeAssociation methods.

Overrides:

writeMAGEML in class Identifiable

java.io.IOException

writeAttributes

public void writeAttributes(java.io.Writer out)
                     throws java.io.IOException

writeAttributes This method is responsible for assembling the attribute data into XML. It calls the super method to write out all attributes of this class and it's ancestors.

Overrides:

writeAttributes in class Identifiable

java.io.IOException

writeAssociations

public void writeAssociations(java.io.Writer out)
                       throws java.io.IOException

writeAssociations This method is responsible for assembling the association data into XML. It calls the super method to write out all associations of this class's ancestors.

Overrides:

writeAssociations in class Identifiable

java.io.IOException

setExperimentalFactor

public void setExperimentalFactor(ExperimentalFactor experimentalFactor)

Set method for experimentalFactor

Specified by:

setExperimentalFactor in interface HasExperimentalFactor

getExperimentalFactor

public ExperimentalFactor getExperimentalFactor()

Get method for experimentalFactor

Specified by:

getExperimentalFactor in interface HasExperimentalFactor

Returns:

value of the attribute

setMeasurement

public void setMeasurement(Measurement measurement)

Set method for measurement

Specified by:

setMeasurement in interface HasMeasurement

getMeasurement

public Measurement getMeasurement()

Get method for measurement

Specified by:

getMeasurement in interface HasMeasurement

Returns:

value of the attribute