A B C D E F G H I J K L M N O P Q R S T U V W Y Z

O

objectStack - Variable in class org.biomage.tools.xmlutils.MAGEContentHandler

ONE_TO_MANY - Static variable in class org.biomage.tools.generate_er.CreateMageER

foreign key type is one to many

ONE_TO_ONE - Static variable in class org.biomage.tools.generate_er.CreateMageER

foreign key type is one to one

oneIndent - Static variable in class org.biomage.tools.generate_er.CreateMageER

one indent: a tab key

oneIndent - Static variable in class org.biomage.tools.helpers.StringOutputHelpers

Description: Size of indentation.

OneToMany(Table, AssociationColumn, CreateFile, CreateFile.AssociationAttrInformation) - Method in class org.biomage.tools.generate_er.CreateMageER

Description: create an association column for one to one relationship

OneToOne(Table, AssociationColumn, CreateFile, CreateFile.AssociationAttrInformation) - Method in class org.biomage.tools.generate_er.CreateMageER

Description: create an association column for one to one relationship

ontologyEntries - Variable in class org.biomage.BioSequence.BioSequence

Ontology entries referring to common values associated with BioSequences, such as gene names, go ids, etc.

OntologyEntry - class org.biomage.Description.OntologyEntry.

A single entry from an ontology or a controlled vocabulary.

OntologyEntry() - Constructor for class org.biomage.Description.OntologyEntry

Default constructor.

OntologyEntry(Attributes) - Constructor for class org.biomage.Description.OntologyEntry

Attribute constructor.

ontologyReference - Variable in class org.biomage.Description.OntologyEntry

Many ontology entries will not yet have formalized ontologies.

org.biomage.Array - package org.biomage.Array

org.biomage.ArrayDesign - package org.biomage.ArrayDesign

org.biomage.AuditAndSecurity - package org.biomage.AuditAndSecurity

org.biomage.BioAssay - package org.biomage.BioAssay

org.biomage.BioAssayData - package org.biomage.BioAssayData

org.biomage.BioEvent - package org.biomage.BioEvent

org.biomage.BioMaterial - package org.biomage.BioMaterial

org.biomage.BioSequence - package org.biomage.BioSequence

org.biomage.BQS - package org.biomage.BQS

org.biomage.Common - package org.biomage.Common

org.biomage.Description - package org.biomage.Description

org.biomage.DesignElement - package org.biomage.DesignElement

org.biomage.Experiment - package org.biomage.Experiment

org.biomage.HigherLevelAnalysis - package org.biomage.HigherLevelAnalysis

org.biomage.Interface - package org.biomage.Interface

org.biomage.Measurement - package org.biomage.Measurement

org.biomage.Protocol - package org.biomage.Protocol

org.biomage.QuantitationType - package org.biomage.QuantitationType

org.biomage.tools.generate_er - package org.biomage.tools.generate_er

org.biomage.tools.helpers - package org.biomage.tools.helpers

org.biomage.tools.xmlutils - package org.biomage.tools.xmlutils

Organization - class org.biomage.AuditAndSecurity.Organization.

Organizations are entities like companies, universities, government agencies for which the attributes are self describing.

Organization() - Constructor for class org.biomage.AuditAndSecurity.Organization

Default constructor.

Organization(Attributes) - Constructor for class org.biomage.AuditAndSecurity.Organization

Attribute constructor.

OTHER - Variable in class org.biomage.Measurement.VolumeUnit.UnitNameCV

OTHER - Variable in class org.biomage.Measurement.TimeUnit.UnitNameCV

OTHER - Variable in class org.biomage.Measurement.QuantityUnit.UnitNameCV

OTHER - Variable in class org.biomage.Measurement.Measurement.KindCV

OTHER - Variable in class org.biomage.Measurement.MassUnit.UnitNameCV

OTHER - Variable in class org.biomage.Measurement.DistanceUnit.UnitNameCV

OTHER - Variable in class org.biomage.Measurement.ConcentrationUnit.UnitNameCV

owner - Variable in class org.biomage.AuditAndSecurity.Security

The owner of the security rights.