A B C D E F G H I J K L M N O P Q R S T U V W Y Z

R

Ratio - class org.biomage.QuantitationType.Ratio.

The ratio of two or more signals, typically between two channels.

Ratio() - Constructor for class org.biomage.QuantitationType.Ratio

Default constructor.

Ratio(Attributes) - Constructor for class org.biomage.QuantitationType.Ratio

Attribute constructor.

readGroups - Variable in class org.biomage.AuditAndSecurity.Security

Specifies which security groups have read permission.

regions - Variable in class org.biomage.BioSequence.SeqFeature

Association to classes that describe the location with the sequence of the SeqFeature.

remove(Object, Object) - Method in interface org.biomage.tools.xmlutils.MultiMap

Remove the given ( key, value ) pair from this MultiMap.

remove(Object, Object) - Method in class org.biomage.tools.xmlutils.MultiHashtable

Remove the given ( key, value ) pair from this MultiMap.

remove(Object, Object) - Method in class org.biomage.tools.xmlutils.MultiHashMap

Remove the given ( key, value ) pair from this MultiMap.

removeAll(Object) - Method in interface org.biomage.tools.xmlutils.MultiMap

Remove all references to an Object (all values and a key, if any).

removeAll(Object) - Method in class org.biomage.tools.xmlutils.MultiHashtable

Remove all references to an Object (all values and a key, if any).

removeAll(Object) - Method in class org.biomage.tools.xmlutils.MultiHashMap

Remove all references to an Object (all values and a key, if any).

removeElementAtFromAdjustments(int) - Method in class org.biomage.Array.ArrayManufactureDeviation

Method to remove by position from Adjustments_list

removeElementAtFromAdjustments(int) - Method in interface org.biomage.Interface.HasAdjustments

Method to remove by position from Adjustments_list

removeElementAtFromAnalysisResults(int) - Method in class org.biomage.Experiment.Experiment

Method to remove by position from AnalysisResults_list

removeElementAtFromAnalysisResults(int) - Method in interface org.biomage.Interface.HasAnalysisResults

Method to remove by position from AnalysisResults_list

removeElementAtFromAnnotations(int) - Method in class org.biomage.Description.Description

Method to remove by position from Annotations_list

removeElementAtFromAnnotations(int) - Method in interface org.biomage.Interface.HasAnnotations

Method to remove by position from Annotations_list

removeElementAtFromArray_list(int) - Method in class org.biomage.Array.Array_package

Method to remove by position from Array_list

removeElementAtFromArrayDesign_list(int) - Method in class org.biomage.ArrayDesign.ArrayDesign_package

Method to remove by position from ArrayDesign_list

removeElementAtFromArrayGroup_list(int) - Method in class org.biomage.Array.Array_package

Method to remove by position from ArrayGroup_list

removeElementAtFromArrayManufacture_list(int) - Method in class org.biomage.Array.Array_package

Method to remove by position from ArrayManufacture_list

removeElementAtFromArrayManufactureDeviations(int) - Method in class org.biomage.Array.Array

Method to remove by position from ArrayManufactureDeviations_list

removeElementAtFromArrayManufactureDeviations(int) - Method in interface org.biomage.Interface.HasArrayManufactureDeviations

Method to remove by position from ArrayManufactureDeviations_list

removeElementAtFromArrayManufacturers(int) - Method in class org.biomage.Array.ArrayManufacture

Method to remove by position from ArrayManufacturers_list

removeElementAtFromArrayManufacturers(int) - Method in interface org.biomage.Interface.HasArrayManufacturers

Method to remove by position from ArrayManufacturers_list

removeElementAtFromArrays(int) - Method in class org.biomage.Array.ArrayManufacture

Method to remove by position from Arrays_list

removeElementAtFromArrays(int) - Method in class org.biomage.Array.ArrayGroup

Method to remove by position from Arrays_list

removeElementAtFromArrays(int) - Method in interface org.biomage.Interface.HasArrays

Method to remove by position from Arrays_list

removeElementAtFromAuditTrail(int) - Method in class org.biomage.Common.Describable

Method to remove by position from AuditTrail_list

removeElementAtFromAuditTrail(int) - Method in interface org.biomage.Interface.HasAuditTrail

Method to remove by position from AuditTrail_list

removeElementAtFromBibliographicReferences(int) - Method in class org.biomage.Description.Description

Method to remove by position from BibliographicReferences_list

removeElementAtFromBibliographicReferences(int) - Method in interface org.biomage.Interface.HasBibliographicReferences

Method to remove by position from BibliographicReferences_list

removeElementAtFromBioAssay_list(int) - Method in class org.biomage.BioAssay.BioAssay_package

Method to remove by position from BioAssay_list

removeElementAtFromBioAssayData_list(int) - Method in class org.biomage.BioAssayData.BioAssayData_package

Method to remove by position from BioAssayData_list

removeElementAtFromBioAssayData(int) - Method in class org.biomage.Experiment.Experiment

Method to remove by position from BioAssayData_list

removeElementAtFromBioAssayData(int) - Method in interface org.biomage.Interface.HasBioAssayData

Method to remove by position from BioAssayData_list

removeElementAtFromBioAssayDataCluster_list(int) - Method in class org.biomage.HigherLevelAnalysis.HigherLevelAnalysis_package

Method to remove by position from BioAssayDataCluster_list

removeElementAtFromBioAssayDataSources(int) - Method in class org.biomage.BioAssayData.Transformation

Method to remove by position from BioAssayDataSources_list

removeElementAtFromBioAssayDataSources(int) - Method in interface org.biomage.Interface.HasBioAssayDataSources

Method to remove by position from BioAssayDataSources_list

removeElementAtFromBioAssayDimension_list(int) - Method in class org.biomage.BioAssayData.BioAssayData_package

Method to remove by position from BioAssayDimension_list

removeElementAtFromBioAssayFactorValues(int) - Method in class org.biomage.BioAssay.BioAssay

Method to remove by position from BioAssayFactorValues_list

removeElementAtFromBioAssayFactorValues(int) - Method in interface org.biomage.Interface.HasBioAssayFactorValues

Method to remove by position from BioAssayFactorValues_list

removeElementAtFromBioAssayMap_list(int) - Method in class org.biomage.BioAssayData.BioAssayData_package

Method to remove by position from BioAssayMap_list

removeElementAtFromBioAssayMaps(int) - Method in class org.biomage.BioAssayData.BioAssayMapping

Method to remove by position from BioAssayMaps_list

removeElementAtFromBioAssayMaps(int) - Method in interface org.biomage.Interface.HasBioAssayMaps

Method to remove by position from BioAssayMaps_list

removeElementAtFromBioAssays(int) - Method in class org.biomage.BioAssayData.BioAssayDimension

Method to remove by position from BioAssays_list

removeElementAtFromBioAssays(int) - Method in class org.biomage.Experiment.Experiment

Method to remove by position from BioAssays_list

removeElementAtFromBioAssays(int) - Method in interface org.biomage.Interface.HasBioAssays

Method to remove by position from BioAssays_list

removeElementAtFromBioAssayTreatments(int) - Method in class org.biomage.BioAssay.PhysicalBioAssay

Method to remove by position from BioAssayTreatments_list

removeElementAtFromBioAssayTreatments(int) - Method in interface org.biomage.Interface.HasBioAssayTreatments

Method to remove by position from BioAssayTreatments_list

removeElementAtFromBioAssayTupleData(int) - Method in class org.biomage.BioAssayData.BioDataTuples

Method to remove by position from BioAssayTupleData_list

removeElementAtFromBioAssayTupleData(int) - Method in interface org.biomage.Interface.HasBioAssayTupleData

Method to remove by position from BioAssayTupleData_list

removeElementAtFromBiologicalCharacteristics(int) - Method in class org.biomage.DesignElement.CompositeSequence

Method to remove by position from BiologicalCharacteristics_list

removeElementAtFromBiologicalCharacteristics(int) - Method in interface org.biomage.Interface.HasBiologicalCharacteristics

Method to remove by position from BiologicalCharacteristics_list

removeElementAtFromBioMaterial_list(int) - Method in class org.biomage.BioMaterial.BioMaterial_package

Method to remove by position from BioMaterial_list

removeElementAtFromBioSequence_list(int) - Method in class org.biomage.BioSequence.BioSequence_package

Method to remove by position from BioSequence_list

removeElementAtFromChannel_list(int) - Method in class org.biomage.BioAssay.BioAssay_package

Method to remove by position from Channel_list

removeElementAtFromChannels(int) - Method in class org.biomage.BioAssay.Image

Method to remove by position from Channels_list

removeElementAtFromChannels(int) - Method in class org.biomage.BioAssay.BioAssay

Method to remove by position from Channels_list

removeElementAtFromChannels(int) - Method in interface org.biomage.Interface.HasChannels

Method to remove by position from Channels_list

removeElementAtFromCharacteristics(int) - Method in class org.biomage.BioMaterial.BioMaterial

Method to remove by position from Characteristics_list

removeElementAtFromCharacteristics(int) - Method in interface org.biomage.Interface.HasCharacteristics

Method to remove by position from Characteristics_list

removeElementAtFromComponentCompounds(int) - Method in class org.biomage.BioMaterial.Compound

Method to remove by position from ComponentCompounds_list

removeElementAtFromComponentCompounds(int) - Method in interface org.biomage.Interface.HasComponentCompounds

Method to remove by position from ComponentCompounds_list

removeElementAtFromCompositeCompositeMap_list(int) - Method in class org.biomage.DesignElement.DesignElement_package

Method to remove by position from CompositeCompositeMap_list

removeElementAtFromCompositeCompositeMaps(int) - Method in class org.biomage.DesignElement.CompositeSequence

Method to remove by position from CompositeCompositeMaps_list

removeElementAtFromCompositeCompositeMaps(int) - Method in interface org.biomage.Interface.HasCompositeCompositeMaps

Method to remove by position from CompositeCompositeMaps_list

removeElementAtFromCompositeGroup_list(int) - Method in class org.biomage.ArrayDesign.ArrayDesign_package

Method to remove by position from CompositeGroup_list

removeElementAtFromCompositeGroups(int) - Method in class org.biomage.ArrayDesign.ArrayDesign

Method to remove by position from CompositeGroups_list

removeElementAtFromCompositeGroups(int) - Method in interface org.biomage.Interface.HasCompositeGroups

Method to remove by position from CompositeGroups_list

removeElementAtFromCompositePositionSources(int) - Method in class org.biomage.DesignElement.CompositeCompositeMap

Method to remove by position from CompositePositionSources_list

removeElementAtFromCompositePositionSources(int) - Method in interface org.biomage.Interface.HasCompositePositionSources

Method to remove by position from CompositePositionSources_list

removeElementAtFromCompositeSequence_list(int) - Method in class org.biomage.DesignElement.DesignElement_package

Method to remove by position from CompositeSequence_list

removeElementAtFromCompositeSequences(int) - Method in class org.biomage.ArrayDesign.CompositeGroup

Method to remove by position from CompositeSequences_list

removeElementAtFromCompositeSequences(int) - Method in class org.biomage.BioAssayData.CompositeSequenceDimension

Method to remove by position from CompositeSequences_list

removeElementAtFromCompositeSequences(int) - Method in interface org.biomage.Interface.HasCompositeSequences

Method to remove by position from CompositeSequences_list

removeElementAtFromCompound_list(int) - Method in class org.biomage.BioMaterial.BioMaterial_package

Method to remove by position from Compound_list

removeElementAtFromCompoundMeasurements(int) - Method in class org.biomage.BioMaterial.Treatment

Method to remove by position from CompoundMeasurements_list

removeElementAtFromCompoundMeasurements(int) - Method in interface org.biomage.Interface.HasCompoundMeasurements

Method to remove by position from CompoundMeasurements_list

removeElementAtFromConfidenceIndicators(int) - Method in interface org.biomage.Interface.HasConfidenceIndicators

Method to remove by position from ConfidenceIndicators_list

removeElementAtFromConfidenceIndicators(int) - Method in class org.biomage.QuantitationType.QuantitationType

Method to remove by position from ConfidenceIndicators_list

removeElementAtFromContact_list(int) - Method in class org.biomage.AuditAndSecurity.AuditAndSecurity_package

Method to remove by position from Contact_list

removeElementAtFromContacts(int) - Method in class org.biomage.Description.Database

Method to remove by position from Contacts_list

removeElementAtFromContacts(int) - Method in interface org.biomage.Interface.HasContacts

Method to remove by position from Contacts_list

removeElementAtFromContainedFeatures(int) - Method in class org.biomage.BioAssayData.FeatureDimension

Method to remove by position from ContainedFeatures_list

removeElementAtFromContainedFeatures(int) - Method in interface org.biomage.Interface.HasContainedFeatures

Method to remove by position from ContainedFeatures_list

removeElementAtFromControlFeatures(int) - Method in class org.biomage.DesignElement.Feature

Method to remove by position from ControlFeatures_list

removeElementAtFromControlFeatures(int) - Method in interface org.biomage.Interface.HasControlFeatures

Method to remove by position from ControlFeatures_list

removeElementAtFromControlledFeatures(int) - Method in class org.biomage.DesignElement.Feature

Method to remove by position from ControlledFeatures_list

removeElementAtFromControlledFeatures(int) - Method in interface org.biomage.Interface.HasControlledFeatures

Method to remove by position from ControlledFeatures_list

removeElementAtFromDatabase_list(int) - Method in class org.biomage.Description.Description_package

Method to remove by position from Database_list

removeElementAtFromDatabaseReferences(int) - Method in class org.biomage.Description.Description

Method to remove by position from DatabaseReferences_list

removeElementAtFromDatabaseReferences(int) - Method in interface org.biomage.Interface.HasDatabaseReferences

Method to remove by position from DatabaseReferences_list

removeElementAtFromDerivedBioAssayData(int) - Method in class org.biomage.BioAssay.DerivedBioAssay

Method to remove by position from DerivedBioAssayData_list

removeElementAtFromDerivedBioAssayData(int) - Method in interface org.biomage.Interface.HasDerivedBioAssayData

Method to remove by position from DerivedBioAssayData_list

removeElementAtFromDescriptions(int) - Method in class org.biomage.Common.Describable

Method to remove by position from Descriptions_list

removeElementAtFromDescriptions(int) - Method in interface org.biomage.Interface.HasDescriptions

Method to remove by position from Descriptions_list

removeElementAtFromDesignElementDimension_list(int) - Method in class org.biomage.BioAssayData.BioAssayData_package

Method to remove by position from DesignElementDimension_list

removeElementAtFromDesignElementMaps(int) - Method in class org.biomage.BioAssayData.DesignElementMapping

Method to remove by position from DesignElementMaps_list

removeElementAtFromDesignElementMaps(int) - Method in interface org.biomage.Interface.HasDesignElementMaps

Method to remove by position from DesignElementMaps_list

removeElementAtFromDesignProviders(int) - Method in class org.biomage.ArrayDesign.ArrayDesign

Method to remove by position from DesignProviders_list

removeElementAtFromDesignProviders(int) - Method in interface org.biomage.Interface.HasDesignProviders

Method to remove by position from DesignProviders_list

removeElementAtFromExperiment_list(int) - Method in class org.biomage.Experiment.Experiment_package

Method to remove by position from Experiment_list

removeElementAtFromExperimentalFactors(int) - Method in class org.biomage.Experiment.ExperimentDesign

Method to remove by position from ExperimentalFactors_list

removeElementAtFromExperimentalFactors(int) - Method in interface org.biomage.Interface.HasExperimentalFactors

Method to remove by position from ExperimentalFactors_list

removeElementAtFromFactorValues(int) - Method in class org.biomage.Experiment.ExperimentalFactor

Method to remove by position from FactorValues_list

removeElementAtFromFactorValues(int) - Method in interface org.biomage.Interface.HasFactorValues

Method to remove by position from FactorValues_list

removeElementAtFromFailTypes(int) - Method in class org.biomage.DesignElement.Reporter

Method to remove by position from FailTypes_list

removeElementAtFromFailTypes(int) - Method in interface org.biomage.Interface.HasFailTypes

Method to remove by position from FailTypes_list

removeElementAtFromFeatureDefects(int) - Method in class org.biomage.Array.ArrayManufactureDeviation

Method to remove by position from FeatureDefects_list

removeElementAtFromFeatureDefects(int) - Method in interface org.biomage.Interface.HasFeatureDefects

Method to remove by position from FeatureDefects_list

removeElementAtFromFeatureGroups(int) - Method in class org.biomage.ArrayDesign.ArrayDesign

Method to remove by position from FeatureGroups_list

removeElementAtFromFeatureGroups(int) - Method in interface org.biomage.Interface.HasFeatureGroups

Method to remove by position from FeatureGroups_list

removeElementAtFromFeatureInformationSources(int) - Method in class org.biomage.DesignElement.FeatureReporterMap

Method to remove by position from FeatureInformationSources_list

removeElementAtFromFeatureInformationSources(int) - Method in interface org.biomage.Interface.HasFeatureInformationSources

Method to remove by position from FeatureInformationSources_list

removeElementAtFromFeatureLIMSs(int) - Method in class org.biomage.Array.ArrayManufacture

Method to remove by position from FeatureLIMSs_list

removeElementAtFromFeatureLIMSs(int) - Method in interface org.biomage.Interface.HasFeatureLIMSs

Method to remove by position from FeatureLIMSs_list

removeElementAtFromFeatureReporterMap_list(int) - Method in class org.biomage.DesignElement.DesignElement_package

Method to remove by position from FeatureReporterMap_list

removeElementAtFromFeatureReporterMaps(int) - Method in class org.biomage.DesignElement.Reporter

Method to remove by position from FeatureReporterMaps_list

removeElementAtFromFeatureReporterMaps(int) - Method in interface org.biomage.Interface.HasFeatureReporterMaps

Method to remove by position from FeatureReporterMaps_list

removeElementAtFromFeatures(int) - Method in class org.biomage.ArrayDesign.FeatureGroup

Method to remove by position from Features_list

removeElementAtFromFeatures(int) - Method in interface org.biomage.Interface.HasFeatures

Method to remove by position from Features_list

removeElementAtFromFiducials(int) - Method in class org.biomage.Array.ArrayGroup

Method to remove by position from Fiducials_list

removeElementAtFromFiducials(int) - Method in interface org.biomage.Interface.HasFiducials

Method to remove by position from Fiducials_list

removeElementAtFromHardware_list(int) - Method in class org.biomage.Protocol.Protocol_package

Method to remove by position from Hardware_list

removeElementAtFromHardwareApplications(int) - Method in interface org.biomage.Interface.HasHardwareApplications

Method to remove by position from HardwareApplications_list

removeElementAtFromHardwareApplications(int) - Method in class org.biomage.Protocol.ProtocolApplication

Method to remove by position from HardwareApplications_list

removeElementAtFromHardwareManufacturers(int) - Method in interface org.biomage.Interface.HasHardwareManufacturers

Method to remove by position from HardwareManufacturers_list

removeElementAtFromHardwareManufacturers(int) - Method in class org.biomage.Protocol.Hardware

Method to remove by position from HardwareManufacturers_list

removeElementAtFromHardwares(int) - Method in interface org.biomage.Interface.HasHardwares

Method to remove by position from Hardwares_list

removeElementAtFromHardwares(int) - Method in class org.biomage.Protocol.Protocol

Method to remove by position from Hardwares_list

removeElementAtFromImages(int) - Method in class org.biomage.BioAssay.ImageAcquisition

Method to remove by position from Images_list

removeElementAtFromImages(int) - Method in interface org.biomage.Interface.HasImages

Method to remove by position from Images_list

removeElementAtFromImmobilizedCharacteristics(int) - Method in class org.biomage.DesignElement.Reporter

Method to remove by position from ImmobilizedCharacteristics_list

removeElementAtFromImmobilizedCharacteristics(int) - Method in interface org.biomage.Interface.HasImmobilizedCharacteristics

Method to remove by position from ImmobilizedCharacteristics_list

removeElementAtFromLabels(int) - Method in class org.biomage.BioAssay.Channel

Method to remove by position from Labels_list

removeElementAtFromLabels(int) - Method in class org.biomage.BioMaterial.LabeledExtract

Method to remove by position from Labels_list

removeElementAtFromLabels(int) - Method in interface org.biomage.Interface.HasLabels

Method to remove by position from Labels_list

removeElementAtFromMeasuredBioAssayData(int) - Method in class org.biomage.BioAssay.MeasuredBioAssay

Method to remove by position from MeasuredBioAssayData_list

removeElementAtFromMeasuredBioAssayData(int) - Method in interface org.biomage.Interface.HasMeasuredBioAssayData

Method to remove by position from MeasuredBioAssayData_list

removeElementAtFromMembers(int) - Method in class org.biomage.AuditAndSecurity.SecurityGroup

Method to remove by position from Members_list

removeElementAtFromMembers(int) - Method in interface org.biomage.Interface.HasMembers

Method to remove by position from Members_list

removeElementAtFromMismatchInformation(int) - Method in class org.biomage.DesignElement.ReporterPosition

Method to remove by position from MismatchInformation_list

removeElementAtFromMismatchInformation(int) - Method in class org.biomage.DesignElement.FeatureInformation

Method to remove by position from MismatchInformation_list

removeElementAtFromMismatchInformation(int) - Method in class org.biomage.DesignElement.CompositePosition

Method to remove by position from MismatchInformation_list

removeElementAtFromMismatchInformation(int) - Method in interface org.biomage.Interface.HasMismatchInformation

Method to remove by position from MismatchInformation_list

removeElementAtFromNodeContents(int) - Method in class org.biomage.HigherLevelAnalysis.Node

Method to remove by position from NodeContents_list

removeElementAtFromNodeContents(int) - Method in interface org.biomage.Interface.HasNodeContents

Method to remove by position from NodeContents_list

removeElementAtFromNodes(int) - Method in class org.biomage.HigherLevelAnalysis.Node

Method to remove by position from Nodes_list

removeElementAtFromNodes(int) - Method in class org.biomage.HigherLevelAnalysis.BioAssayDataCluster

Method to remove by position from Nodes_list

removeElementAtFromNodes(int) - Method in interface org.biomage.Interface.HasNodes

Method to remove by position from Nodes_list

removeElementAtFromNodeValue(int) - Method in class org.biomage.HigherLevelAnalysis.Node

Method to remove by position from NodeValue_list

removeElementAtFromNodeValue(int) - Method in interface org.biomage.Interface.HasNodeValue

Method to remove by position from NodeValue_list

removeElementAtFromOntologyEntries(int) - Method in class org.biomage.BioSequence.BioSequence

Method to remove by position from OntologyEntries_list

removeElementAtFromOntologyEntries(int) - Method in interface org.biomage.Interface.HasOntologyEntries

Method to remove by position from OntologyEntries_list

removeElementAtFromParameters(int) - Method in class org.biomage.BQS.BibliographicReference

Method to remove by position from Parameters_list

removeElementAtFromParameters(int) - Method in interface org.biomage.Interface.HasParameters

Method to remove by position from Parameters_list

removeElementAtFromParameterTypes(int) - Method in interface org.biomage.Interface.HasParameterTypes

Method to remove by position from ParameterTypes_list

removeElementAtFromParameterTypes(int) - Method in class org.biomage.Protocol.Parameterizable

Method to remove by position from ParameterTypes_list

removeElementAtFromParameterValues(int) - Method in interface org.biomage.Interface.HasParameterValues

Method to remove by position from ParameterValues_list

removeElementAtFromParameterValues(int) - Method in class org.biomage.Protocol.ParameterizableApplication

Method to remove by position from ParameterValues_list

removeElementAtFromPerformers(int) - Method in interface org.biomage.Interface.HasPerformers

Method to remove by position from Performers_list

removeElementAtFromPerformers(int) - Method in class org.biomage.Protocol.ProtocolApplication

Method to remove by position from Performers_list

removeElementAtFromPhysicalBioAssayData(int) - Method in class org.biomage.BioAssay.PhysicalBioAssay

Method to remove by position from PhysicalBioAssayData_list

removeElementAtFromPhysicalBioAssayData(int) - Method in interface org.biomage.Interface.HasPhysicalBioAssayData

Method to remove by position from PhysicalBioAssayData_list

removeElementAtFromPropertySets(int) - Method in class org.biomage.Common.NameValueType

Method to remove by position from PropertySets_list

removeElementAtFromPropertySets(int) - Method in class org.biomage.Common.Extendable

Method to remove by position from PropertySets_list

removeElementAtFromPropertySets(int) - Method in interface org.biomage.Interface.HasPropertySets

Method to remove by position from PropertySets_list

removeElementAtFromProtocol_list(int) - Method in class org.biomage.Protocol.Protocol_package

Method to remove by position from Protocol_list

removeElementAtFromProtocolApplications(int) - Method in class org.biomage.Array.ArrayManufacture

Method to remove by position from ProtocolApplications_list

removeElementAtFromProtocolApplications(int) - Method in class org.biomage.ArrayDesign.ArrayDesign

Method to remove by position from ProtocolApplications_list

removeElementAtFromProtocolApplications(int) - Method in class org.biomage.BioEvent.BioEvent

Method to remove by position from ProtocolApplications_list

removeElementAtFromProtocolApplications(int) - Method in interface org.biomage.Interface.HasProtocolApplications

Method to remove by position from ProtocolApplications_list

removeElementAtFromProviders(int) - Method in class org.biomage.Experiment.Experiment

Method to remove by position from Providers_list

removeElementAtFromProviders(int) - Method in interface org.biomage.Interface.HasProviders

Method to remove by position from Providers_list

removeElementAtFromQualityControlStatistics(int) - Method in class org.biomage.Array.ArrayManufacture

Method to remove by position from QualityControlStatistics_list

removeElementAtFromQualityControlStatistics(int) - Method in class org.biomage.BioMaterial.BioMaterial

Method to remove by position from QualityControlStatistics_list

removeElementAtFromQualityControlStatistics(int) - Method in interface org.biomage.Interface.HasQualityControlStatistics

Method to remove by position from QualityControlStatistics_list

removeElementAtFromQuantitationType_list(int) - Method in class org.biomage.QuantitationType.QuantitationType_package

Method to remove by position from QuantitationType_list

removeElementAtFromQuantitationTypeDimension_list(int) - Method in class org.biomage.BioAssayData.BioAssayData_package

Method to remove by position from QuantitationTypeDimension_list

removeElementAtFromQuantitationTypeMap_list(int) - Method in class org.biomage.BioAssayData.BioAssayData_package

Method to remove by position from QuantitationTypeMap_list

removeElementAtFromQuantitationTypeMaps(int) - Method in class org.biomage.BioAssayData.QuantitationTypeMapping

Method to remove by position from QuantitationTypeMaps_list

removeElementAtFromQuantitationTypeMaps(int) - Method in interface org.biomage.Interface.HasQuantitationTypeMaps

Method to remove by position from QuantitationTypeMaps_list

removeElementAtFromQuantitationTypes(int) - Method in class org.biomage.BioAssayData.QuantitationTypeDimension

Method to remove by position from QuantitationTypes_list

removeElementAtFromQuantitationTypes(int) - Method in interface org.biomage.Interface.HasQuantitationTypes

Method to remove by position from QuantitationTypes_list

removeElementAtFromReadGroups(int) - Method in class org.biomage.AuditAndSecurity.Security

Method to remove by position from ReadGroups_list

removeElementAtFromReadGroups(int) - Method in interface org.biomage.Interface.HasReadGroups

Method to remove by position from ReadGroups_list

removeElementAtFromRegions(int) - Method in class org.biomage.BioSequence.SeqFeature

Method to remove by position from Regions_list

removeElementAtFromRegions(int) - Method in interface org.biomage.Interface.HasRegions

Method to remove by position from Regions_list

removeElementAtFromReporter_list(int) - Method in class org.biomage.DesignElement.DesignElement_package

Method to remove by position from Reporter_list

removeElementAtFromReporterCompositeMap_list(int) - Method in class org.biomage.DesignElement.DesignElement_package

Method to remove by position from ReporterCompositeMap_list

removeElementAtFromReporterCompositeMaps(int) - Method in class org.biomage.DesignElement.CompositeSequence

Method to remove by position from ReporterCompositeMaps_list

removeElementAtFromReporterCompositeMaps(int) - Method in interface org.biomage.Interface.HasReporterCompositeMaps

Method to remove by position from ReporterCompositeMaps_list

removeElementAtFromReporterGroup_list(int) - Method in class org.biomage.ArrayDesign.ArrayDesign_package

Method to remove by position from ReporterGroup_list

removeElementAtFromReporterGroups(int) - Method in class org.biomage.ArrayDesign.ArrayDesign

Method to remove by position from ReporterGroups_list

removeElementAtFromReporterGroups(int) - Method in interface org.biomage.Interface.HasReporterGroups

Method to remove by position from ReporterGroups_list

removeElementAtFromReporterPositionSources(int) - Method in class org.biomage.DesignElement.ReporterCompositeMap

Method to remove by position from ReporterPositionSources_list

removeElementAtFromReporterPositionSources(int) - Method in interface org.biomage.Interface.HasReporterPositionSources

Method to remove by position from ReporterPositionSources_list

removeElementAtFromReporters(int) - Method in class org.biomage.ArrayDesign.ReporterGroup

Method to remove by position from Reporters_list

removeElementAtFromReporters(int) - Method in class org.biomage.BioAssayData.ReporterDimension

Method to remove by position from Reporters_list

removeElementAtFromReporters(int) - Method in interface org.biomage.Interface.HasReporters

Method to remove by position from Reporters_list

removeElementAtFromRoles(int) - Method in class org.biomage.AuditAndSecurity.Contact

Method to remove by position from Roles_list

removeElementAtFromRoles(int) - Method in interface org.biomage.Interface.HasRoles

Method to remove by position from Roles_list

removeElementAtFromSecurity_list(int) - Method in class org.biomage.AuditAndSecurity.AuditAndSecurity_package

Method to remove by position from Security_list

removeElementAtFromSecurityGroup_list(int) - Method in class org.biomage.AuditAndSecurity.AuditAndSecurity_package

Method to remove by position from SecurityGroup_list

removeElementAtFromSeqFeatures(int) - Method in class org.biomage.BioSequence.BioSequence

Method to remove by position from SeqFeatures_list

removeElementAtFromSeqFeatures(int) - Method in interface org.biomage.Interface.HasSeqFeatures

Method to remove by position from SeqFeatures_list

removeElementAtFromSequenceDatabases(int) - Method in class org.biomage.BioSequence.BioSequence

Method to remove by position from SequenceDatabases_list

removeElementAtFromSequenceDatabases(int) - Method in interface org.biomage.Interface.HasSequenceDatabases

Method to remove by position from SequenceDatabases_list

removeElementAtFromSoftware_list(int) - Method in class org.biomage.Protocol.Protocol_package

Method to remove by position from Software_list

removeElementAtFromSoftwareApplications(int) - Method in interface org.biomage.Interface.HasSoftwareApplications

Method to remove by position from SoftwareApplications_list

removeElementAtFromSoftwareApplications(int) - Method in class org.biomage.Protocol.ProtocolApplication

Method to remove by position from SoftwareApplications_list

removeElementAtFromSoftwareManufacturers(int) - Method in interface org.biomage.Interface.HasSoftwareManufacturers

Method to remove by position from SoftwareManufacturers_list

removeElementAtFromSoftwareManufacturers(int) - Method in class org.biomage.Protocol.Software

Method to remove by position from SoftwareManufacturers_list

removeElementAtFromSoftwares(int) - Method in interface org.biomage.Interface.HasSoftwares

Method to remove by position from Softwares_list

removeElementAtFromSoftwares(int) - Method in class org.biomage.Protocol.Software

Method to remove by position from Softwares_list

removeElementAtFromSoftwares(int) - Method in class org.biomage.Protocol.Protocol

Method to remove by position from Softwares_list

removeElementAtFromSoftwares(int) - Method in class org.biomage.Protocol.Hardware

Method to remove by position from Softwares_list

removeElementAtFromSourceBioAssays(int) - Method in class org.biomage.BioAssayData.BioAssayMap

Method to remove by position from SourceBioAssays_list

removeElementAtFromSourceBioAssays(int) - Method in interface org.biomage.Interface.HasSourceBioAssays

Method to remove by position from SourceBioAssays_list

removeElementAtFromSourceBioMaterialMeasurements(int) - Method in class org.biomage.BioAssay.BioAssayCreation

Method to remove by position from SourceBioMaterialMeasurements_list

removeElementAtFromSourceBioMaterialMeasurements(int) - Method in class org.biomage.BioMaterial.Treatment

Method to remove by position from SourceBioMaterialMeasurements_list

removeElementAtFromSourceBioMaterialMeasurements(int) - Method in interface org.biomage.Interface.HasSourceBioMaterialMeasurements

Method to remove by position from SourceBioMaterialMeasurements_list

removeElementAtFromSourcesQuantitationType(int) - Method in class org.biomage.BioAssayData.QuantitationTypeMap

Method to remove by position from SourcesQuantitationType_list

removeElementAtFromSourcesQuantitationType(int) - Method in interface org.biomage.Interface.HasSourcesQuantitationType

Method to remove by position from SourcesQuantitationType_list

removeElementAtFromSubregions(int) - Method in class org.biomage.BioSequence.SeqFeatureLocation

Method to remove by position from Subregions_list

removeElementAtFromSubregions(int) - Method in interface org.biomage.Interface.HasSubregions

Method to remove by position from Subregions_list

removeElementAtFromSummaryStatistics(int) - Method in class org.biomage.BioAssayData.BioAssayData

Method to remove by position from SummaryStatistics_list

removeElementAtFromSummaryStatistics(int) - Method in interface org.biomage.Interface.HasSummaryStatistics

Method to remove by position from SummaryStatistics_list

removeElementAtFromTopLevelBioAssays(int) - Method in class org.biomage.Experiment.ExperimentDesign

Method to remove by position from TopLevelBioAssays_list

removeElementAtFromTopLevelBioAssays(int) - Method in interface org.biomage.Interface.HasTopLevelBioAssays

Method to remove by position from TopLevelBioAssays_list

removeElementAtFromTreatments(int) - Method in class org.biomage.BioMaterial.BioMaterial

Method to remove by position from Treatments_list

removeElementAtFromTreatments(int) - Method in interface org.biomage.Interface.HasTreatments

Method to remove by position from Treatments_list

removeElementAtFromTypes(int) - Method in class org.biomage.ArrayDesign.DesignElementGroup

Method to remove by position from Types_list

removeElementAtFromTypes(int) - Method in class org.biomage.Experiment.ExperimentDesign

Method to remove by position from Types_list

removeElementAtFromTypes(int) - Method in interface org.biomage.Interface.HasTypes

Method to remove by position from Types_list

removeElementAtFromWriteGroups(int) - Method in class org.biomage.AuditAndSecurity.Security

Method to remove by position from WriteGroups_list

removeElementAtFromWriteGroups(int) - Method in interface org.biomage.Interface.HasWriteGroups

Method to remove by position from WriteGroups_list

removeElementAtFromZoneGroups(int) - Method in class org.biomage.ArrayDesign.PhysicalArrayDesign

Method to remove by position from ZoneGroups_list

removeElementAtFromZoneGroups(int) - Method in interface org.biomage.Interface.HasZoneGroups

Method to remove by position from ZoneGroups_list

removeElementAtFromZoneLocations(int) - Method in class org.biomage.ArrayDesign.ZoneGroup

Method to remove by position from ZoneLocations_list

removeElementAtFromZoneLocations(int) - Method in interface org.biomage.Interface.HasZoneLocations

Method to remove by position from ZoneLocations_list

removeFromAdjustments(ZoneDefect) - Method in class org.biomage.Array.ArrayManufactureDeviation

Method to remove first ZoneDefect from Adjustments_list

removeFromAdjustments(ZoneDefect) - Method in interface org.biomage.Interface.HasAdjustments

Method to remove first ZoneDefect from Adjustments_list

removeFromAnalysisResults(BioAssayDataCluster) - Method in class org.biomage.Experiment.Experiment

Method to remove first BioAssayDataCluster from AnalysisResults_list

removeFromAnalysisResults(BioAssayDataCluster) - Method in interface org.biomage.Interface.HasAnalysisResults

Method to remove first BioAssayDataCluster from AnalysisResults_list

removeFromAnnotations(OntologyEntry) - Method in class org.biomage.Description.Description

Method to remove first OntologyEntry from Annotations_list

removeFromAnnotations(OntologyEntry) - Method in interface org.biomage.Interface.HasAnnotations

Method to remove first OntologyEntry from Annotations_list

removeFromArray_list(Array) - Method in class org.biomage.Array.Array_package

Method to remove first Array from Array_list

removeFromArrayDesign_list(ArrayDesign) - Method in class org.biomage.ArrayDesign.ArrayDesign_package

Method to remove first ArrayDesign from ArrayDesign_list

removeFromArrayGroup_list(ArrayGroup) - Method in class org.biomage.Array.Array_package

Method to remove first ArrayGroup from ArrayGroup_list

removeFromArrayManufacture_list(ArrayManufacture) - Method in class org.biomage.Array.Array_package

Method to remove first ArrayManufacture from ArrayManufacture_list

removeFromArrayManufactureDeviations(ArrayManufactureDeviation) - Method in class org.biomage.Array.Array

Method to remove first ArrayManufactureDeviation from ArrayManufactureDeviations_list

removeFromArrayManufactureDeviations(ArrayManufactureDeviation) - Method in interface org.biomage.Interface.HasArrayManufactureDeviations

Method to remove first ArrayManufactureDeviation from ArrayManufactureDeviations_list

removeFromArrayManufacturers(Contact) - Method in class org.biomage.Array.ArrayManufacture

Method to remove first Contact from ArrayManufacturers_list

removeFromArrayManufacturers(Contact) - Method in interface org.biomage.Interface.HasArrayManufacturers

Method to remove first Contact from ArrayManufacturers_list

removeFromArrays(Array) - Method in class org.biomage.Array.ArrayManufacture

Method to remove first Array from Arrays_list

removeFromArrays(Array) - Method in class org.biomage.Array.ArrayGroup

Method to remove first Array from Arrays_list

removeFromArrays(Array) - Method in interface org.biomage.Interface.HasArrays

Method to remove first Array from Arrays_list

removeFromAuditTrail(Audit) - Method in class org.biomage.Common.Describable

Method to remove first Audit from AuditTrail_list

removeFromAuditTrail(Audit) - Method in interface org.biomage.Interface.HasAuditTrail

Method to remove first Audit from AuditTrail_list

removeFromBibliographicReferences(BibliographicReference) - Method in class org.biomage.Description.Description

Method to remove first BibliographicReference from BibliographicReferences_list

removeFromBibliographicReferences(BibliographicReference) - Method in interface org.biomage.Interface.HasBibliographicReferences

Method to remove first BibliographicReference from BibliographicReferences_list

removeFromBioAssay_list(BioAssay) - Method in class org.biomage.BioAssay.BioAssay_package

Method to remove first BioAssay from BioAssay_list

removeFromBioAssayData_list(BioAssayData) - Method in class org.biomage.BioAssayData.BioAssayData_package

Method to remove first BioAssayData from BioAssayData_list

removeFromBioAssayData(BioAssayData) - Method in class org.biomage.Experiment.Experiment

Method to remove first BioAssayData from BioAssayData_list

removeFromBioAssayData(BioAssayData) - Method in interface org.biomage.Interface.HasBioAssayData

Method to remove first BioAssayData from BioAssayData_list

removeFromBioAssayDataCluster_list(BioAssayDataCluster) - Method in class org.biomage.HigherLevelAnalysis.HigherLevelAnalysis_package

Method to remove first BioAssayDataCluster from BioAssayDataCluster_list

removeFromBioAssayDataSources(BioAssayData) - Method in class org.biomage.BioAssayData.Transformation

Method to remove first BioAssayData from BioAssayDataSources_list

removeFromBioAssayDataSources(BioAssayData) - Method in interface org.biomage.Interface.HasBioAssayDataSources

Method to remove first BioAssayData from BioAssayDataSources_list

removeFromBioAssayDimension_list(BioAssayDimension) - Method in class org.biomage.BioAssayData.BioAssayData_package

Method to remove first BioAssayDimension from BioAssayDimension_list

removeFromBioAssayFactorValues(FactorValue) - Method in class org.biomage.BioAssay.BioAssay

Method to remove first FactorValue from BioAssayFactorValues_list

removeFromBioAssayFactorValues(FactorValue) - Method in interface org.biomage.Interface.HasBioAssayFactorValues

Method to remove first FactorValue from BioAssayFactorValues_list

removeFromBioAssayMap_list(BioAssayMap) - Method in class org.biomage.BioAssayData.BioAssayData_package

Method to remove first BioAssayMap from BioAssayMap_list

removeFromBioAssayMaps(BioAssayMap) - Method in class org.biomage.BioAssayData.BioAssayMapping

Method to remove first BioAssayMap from BioAssayMaps_list

removeFromBioAssayMaps(BioAssayMap) - Method in interface org.biomage.Interface.HasBioAssayMaps

Method to remove first BioAssayMap from BioAssayMaps_list

removeFromBioAssays(BioAssay) - Method in class org.biomage.BioAssayData.BioAssayDimension

Method to remove first BioAssay from BioAssays_list

removeFromBioAssays(BioAssay) - Method in class org.biomage.Experiment.Experiment

Method to remove first BioAssay from BioAssays_list

removeFromBioAssays(BioAssay) - Method in interface org.biomage.Interface.HasBioAssays

Method to remove first BioAssay from BioAssays_list

removeFromBioAssayTreatments(BioAssayTreatment) - Method in class org.biomage.BioAssay.PhysicalBioAssay

Method to remove first BioAssayTreatment from BioAssayTreatments_list

removeFromBioAssayTreatments(BioAssayTreatment) - Method in interface org.biomage.Interface.HasBioAssayTreatments

Method to remove first BioAssayTreatment from BioAssayTreatments_list

removeFromBioAssayTupleData(BioAssayDatum) - Method in class org.biomage.BioAssayData.BioDataTuples

Method to remove first BioAssayDatum from BioAssayTupleData_list

removeFromBioAssayTupleData(BioAssayDatum) - Method in interface org.biomage.Interface.HasBioAssayTupleData

Method to remove first BioAssayDatum from BioAssayTupleData_list

removeFromBiologicalCharacteristics(BioSequence) - Method in class org.biomage.DesignElement.CompositeSequence

Method to remove first BioSequence from BiologicalCharacteristics_list

removeFromBiologicalCharacteristics(BioSequence) - Method in interface org.biomage.Interface.HasBiologicalCharacteristics

Method to remove first BioSequence from BiologicalCharacteristics_list

removeFromBioMaterial_list(BioMaterial) - Method in class org.biomage.BioMaterial.BioMaterial_package

Method to remove first BioMaterial from BioMaterial_list

removeFromBioSequence_list(BioSequence) - Method in class org.biomage.BioSequence.BioSequence_package

Method to remove first BioSequence from BioSequence_list

removeFromChannel_list(Channel) - Method in class org.biomage.BioAssay.BioAssay_package

Method to remove first Channel from Channel_list

removeFromChannels(Channel) - Method in class org.biomage.BioAssay.Image

Method to remove first Channel from Channels_list

removeFromChannels(Channel) - Method in class org.biomage.BioAssay.BioAssay

Method to remove first Channel from Channels_list

removeFromChannels(Channel) - Method in interface org.biomage.Interface.HasChannels

Method to remove first Channel from Channels_list

removeFromCharacteristics(OntologyEntry) - Method in class org.biomage.BioMaterial.BioMaterial

Method to remove first OntologyEntry from Characteristics_list

removeFromCharacteristics(OntologyEntry) - Method in interface org.biomage.Interface.HasCharacteristics

Method to remove first OntologyEntry from Characteristics_list

removeFromComponentCompounds(CompoundMeasurement) - Method in class org.biomage.BioMaterial.Compound

Method to remove first CompoundMeasurement from ComponentCompounds_list

removeFromComponentCompounds(CompoundMeasurement) - Method in interface org.biomage.Interface.HasComponentCompounds

Method to remove first CompoundMeasurement from ComponentCompounds_list

removeFromCompositeCompositeMap_list(CompositeCompositeMap) - Method in class org.biomage.DesignElement.DesignElement_package

Method to remove first CompositeCompositeMap from CompositeCompositeMap_list

removeFromCompositeCompositeMaps(CompositeCompositeMap) - Method in class org.biomage.DesignElement.CompositeSequence

Method to remove first CompositeCompositeMap from CompositeCompositeMaps_list

removeFromCompositeCompositeMaps(CompositeCompositeMap) - Method in interface org.biomage.Interface.HasCompositeCompositeMaps

Method to remove first CompositeCompositeMap from CompositeCompositeMaps_list

removeFromCompositeGroup_list(CompositeGroup) - Method in class org.biomage.ArrayDesign.ArrayDesign_package

Method to remove first CompositeGroup from CompositeGroup_list

removeFromCompositeGroups(CompositeGroup) - Method in class org.biomage.ArrayDesign.ArrayDesign

Method to remove first CompositeGroup from CompositeGroups_list

removeFromCompositeGroups(CompositeGroup) - Method in interface org.biomage.Interface.HasCompositeGroups

Method to remove first CompositeGroup from CompositeGroups_list

removeFromCompositePositionSources(CompositePosition) - Method in class org.biomage.DesignElement.CompositeCompositeMap

Method to remove first CompositePosition from CompositePositionSources_list

removeFromCompositePositionSources(CompositePosition) - Method in interface org.biomage.Interface.HasCompositePositionSources

Method to remove first CompositePosition from CompositePositionSources_list

removeFromCompositeSequence_list(CompositeSequence) - Method in class org.biomage.DesignElement.DesignElement_package

Method to remove first CompositeSequence from CompositeSequence_list

removeFromCompositeSequences(CompositeSequence) - Method in class org.biomage.ArrayDesign.CompositeGroup

Method to remove first CompositeSequence from CompositeSequences_list

removeFromCompositeSequences(CompositeSequence) - Method in class org.biomage.BioAssayData.CompositeSequenceDimension

Method to remove first CompositeSequence from CompositeSequences_list

removeFromCompositeSequences(CompositeSequence) - Method in interface org.biomage.Interface.HasCompositeSequences

Method to remove first CompositeSequence from CompositeSequences_list

removeFromCompound_list(Compound) - Method in class org.biomage.BioMaterial.BioMaterial_package

Method to remove first Compound from Compound_list

removeFromCompoundMeasurements(CompoundMeasurement) - Method in class org.biomage.BioMaterial.Treatment

Method to remove first CompoundMeasurement from CompoundMeasurements_list

removeFromCompoundMeasurements(CompoundMeasurement) - Method in interface org.biomage.Interface.HasCompoundMeasurements

Method to remove first CompoundMeasurement from CompoundMeasurements_list

removeFromConfidenceIndicators(ConfidenceIndicator) - Method in interface org.biomage.Interface.HasConfidenceIndicators

Method to remove first ConfidenceIndicator from ConfidenceIndicators_list

removeFromConfidenceIndicators(ConfidenceIndicator) - Method in class org.biomage.QuantitationType.QuantitationType

Method to remove first ConfidenceIndicator from ConfidenceIndicators_list

removeFromContact_list(Contact) - Method in class org.biomage.AuditAndSecurity.AuditAndSecurity_package

Method to remove first Contact from Contact_list

removeFromContacts(Contact) - Method in class org.biomage.Description.Database

Method to remove first Contact from Contacts_list

removeFromContacts(Contact) - Method in interface org.biomage.Interface.HasContacts

Method to remove first Contact from Contacts_list

removeFromContainedFeatures(Feature) - Method in class org.biomage.BioAssayData.FeatureDimension

Method to remove first Feature from ContainedFeatures_list

removeFromContainedFeatures(Feature) - Method in interface org.biomage.Interface.HasContainedFeatures

Method to remove first Feature from ContainedFeatures_list

removeFromControlFeatures(Feature) - Method in class org.biomage.DesignElement.Feature

Method to remove first Feature from ControlFeatures_list

removeFromControlFeatures(Feature) - Method in interface org.biomage.Interface.HasControlFeatures

Method to remove first Feature from ControlFeatures_list

removeFromControlledFeatures(Feature) - Method in class org.biomage.DesignElement.Feature

Method to remove first Feature from ControlledFeatures_list

removeFromControlledFeatures(Feature) - Method in interface org.biomage.Interface.HasControlledFeatures

Method to remove first Feature from ControlledFeatures_list

removeFromDatabase_list(Database) - Method in class org.biomage.Description.Description_package

Method to remove first Database from Database_list

removeFromDatabaseReferences(DatabaseEntry) - Method in class org.biomage.Description.Description

Method to remove first DatabaseEntry from DatabaseReferences_list

removeFromDatabaseReferences(DatabaseEntry) - Method in interface org.biomage.Interface.HasDatabaseReferences

Method to remove first DatabaseEntry from DatabaseReferences_list

removeFromDerivedBioAssayData(DerivedBioAssayData) - Method in class org.biomage.BioAssay.DerivedBioAssay

Method to remove first DerivedBioAssayData from DerivedBioAssayData_list

removeFromDerivedBioAssayData(DerivedBioAssayData) - Method in interface org.biomage.Interface.HasDerivedBioAssayData

Method to remove first DerivedBioAssayData from DerivedBioAssayData_list

removeFromDescriptions(Description) - Method in class org.biomage.Common.Describable

Method to remove first Description from Descriptions_list

removeFromDescriptions(Description) - Method in interface org.biomage.Interface.HasDescriptions

Method to remove first Description from Descriptions_list

removeFromDesignElementDimension_list(DesignElementDimension) - Method in class org.biomage.BioAssayData.BioAssayData_package

Method to remove first DesignElementDimension from DesignElementDimension_list

removeFromDesignElementMaps(DesignElementMap) - Method in class org.biomage.BioAssayData.DesignElementMapping

Method to remove first DesignElementMap from DesignElementMaps_list

removeFromDesignElementMaps(DesignElementMap) - Method in interface org.biomage.Interface.HasDesignElementMaps

Method to remove first DesignElementMap from DesignElementMaps_list

removeFromDesignProviders(Contact) - Method in class org.biomage.ArrayDesign.ArrayDesign

Method to remove first Contact from DesignProviders_list

removeFromDesignProviders(Contact) - Method in interface org.biomage.Interface.HasDesignProviders

Method to remove first Contact from DesignProviders_list

removeFromExperiment_list(Experiment) - Method in class org.biomage.Experiment.Experiment_package

Method to remove first Experiment from Experiment_list

removeFromExperimentalFactors(ExperimentalFactor) - Method in class org.biomage.Experiment.ExperimentDesign

Method to remove first ExperimentalFactor from ExperimentalFactors_list

removeFromExperimentalFactors(ExperimentalFactor) - Method in interface org.biomage.Interface.HasExperimentalFactors

Method to remove first ExperimentalFactor from ExperimentalFactors_list

removeFromFactorValues(FactorValue) - Method in class org.biomage.Experiment.ExperimentalFactor

Method to remove first FactorValue from FactorValues_list

removeFromFactorValues(FactorValue) - Method in interface org.biomage.Interface.HasFactorValues

Method to remove first FactorValue from FactorValues_list

removeFromFailTypes(OntologyEntry) - Method in class org.biomage.DesignElement.Reporter

Method to remove first OntologyEntry from FailTypes_list

removeFromFailTypes(OntologyEntry) - Method in interface org.biomage.Interface.HasFailTypes

Method to remove first OntologyEntry from FailTypes_list

removeFromFeatureDefects(FeatureDefect) - Method in class org.biomage.Array.ArrayManufactureDeviation

Method to remove first FeatureDefect from FeatureDefects_list

removeFromFeatureDefects(FeatureDefect) - Method in interface org.biomage.Interface.HasFeatureDefects

Method to remove first FeatureDefect from FeatureDefects_list

removeFromFeatureGroups(FeatureGroup) - Method in class org.biomage.ArrayDesign.ArrayDesign

Method to remove first FeatureGroup from FeatureGroups_list

removeFromFeatureGroups(FeatureGroup) - Method in interface org.biomage.Interface.HasFeatureGroups

Method to remove first FeatureGroup from FeatureGroups_list

removeFromFeatureInformationSources(FeatureInformation) - Method in class org.biomage.DesignElement.FeatureReporterMap

Method to remove first FeatureInformation from FeatureInformationSources_list

removeFromFeatureInformationSources(FeatureInformation) - Method in interface org.biomage.Interface.HasFeatureInformationSources

Method to remove first FeatureInformation from FeatureInformationSources_list

removeFromFeatureLIMSs(ManufactureLIMS) - Method in class org.biomage.Array.ArrayManufacture

Method to remove first ManufactureLIMS from FeatureLIMSs_list

removeFromFeatureLIMSs(ManufactureLIMS) - Method in interface org.biomage.Interface.HasFeatureLIMSs

Method to remove first ManufactureLIMS from FeatureLIMSs_list

removeFromFeatureReporterMap_list(FeatureReporterMap) - Method in class org.biomage.DesignElement.DesignElement_package

Method to remove first FeatureReporterMap from FeatureReporterMap_list

removeFromFeatureReporterMaps(FeatureReporterMap) - Method in class org.biomage.DesignElement.Reporter

Method to remove first FeatureReporterMap from FeatureReporterMaps_list

removeFromFeatureReporterMaps(FeatureReporterMap) - Method in interface org.biomage.Interface.HasFeatureReporterMaps

Method to remove first FeatureReporterMap from FeatureReporterMaps_list

removeFromFeatures(Feature) - Method in class org.biomage.ArrayDesign.FeatureGroup

Method to remove first Feature from Features_list

removeFromFeatures(Feature) - Method in interface org.biomage.Interface.HasFeatures

Method to remove first Feature from Features_list

removeFromFiducials(Fiducial) - Method in class org.biomage.Array.ArrayGroup

Method to remove first Fiducial from Fiducials_list

removeFromFiducials(Fiducial) - Method in interface org.biomage.Interface.HasFiducials

Method to remove first Fiducial from Fiducials_list

removeFromHardware_list(Hardware) - Method in class org.biomage.Protocol.Protocol_package

Method to remove first Hardware from Hardware_list

removeFromHardwareApplications(HardwareApplication) - Method in interface org.biomage.Interface.HasHardwareApplications

Method to remove first HardwareApplication from HardwareApplications_list

removeFromHardwareApplications(HardwareApplication) - Method in class org.biomage.Protocol.ProtocolApplication

Method to remove first HardwareApplication from HardwareApplications_list

removeFromHardwareManufacturers(Contact) - Method in interface org.biomage.Interface.HasHardwareManufacturers

Method to remove first Contact from HardwareManufacturers_list

removeFromHardwareManufacturers(Contact) - Method in class org.biomage.Protocol.Hardware

Method to remove first Contact from HardwareManufacturers_list

removeFromHardwares(Hardware) - Method in interface org.biomage.Interface.HasHardwares

Method to remove first Hardware from Hardwares_list

removeFromHardwares(Hardware) - Method in class org.biomage.Protocol.Protocol

Method to remove first Hardware from Hardwares_list

removeFromImages(Image) - Method in class org.biomage.BioAssay.ImageAcquisition

Method to remove first Image from Images_list

removeFromImages(Image) - Method in interface org.biomage.Interface.HasImages

Method to remove first Image from Images_list

removeFromImmobilizedCharacteristics(BioSequence) - Method in class org.biomage.DesignElement.Reporter

Method to remove first BioSequence from ImmobilizedCharacteristics_list

removeFromImmobilizedCharacteristics(BioSequence) - Method in interface org.biomage.Interface.HasImmobilizedCharacteristics

Method to remove first BioSequence from ImmobilizedCharacteristics_list

removeFromLabels(Compound) - Method in class org.biomage.BioAssay.Channel

Method to remove first Compound from Labels_list

removeFromLabels(Compound) - Method in class org.biomage.BioMaterial.LabeledExtract

Method to remove first Compound from Labels_list

removeFromLabels(Compound) - Method in interface org.biomage.Interface.HasLabels

Method to remove first Compound from Labels_list

removeFromMeasuredBioAssayData(MeasuredBioAssayData) - Method in class org.biomage.BioAssay.MeasuredBioAssay

Method to remove first MeasuredBioAssayData from MeasuredBioAssayData_list

removeFromMeasuredBioAssayData(MeasuredBioAssayData) - Method in interface org.biomage.Interface.HasMeasuredBioAssayData

Method to remove first MeasuredBioAssayData from MeasuredBioAssayData_list

removeFromMembers(Contact) - Method in class org.biomage.AuditAndSecurity.SecurityGroup

Method to remove first Contact from Members_list

removeFromMembers(Contact) - Method in interface org.biomage.Interface.HasMembers

Method to remove first Contact from Members_list

removeFromMismatchInformation(MismatchInformation) - Method in class org.biomage.DesignElement.ReporterPosition

Method to remove first MismatchInformation from MismatchInformation_list

removeFromMismatchInformation(MismatchInformation) - Method in class org.biomage.DesignElement.FeatureInformation

Method to remove first MismatchInformation from MismatchInformation_list

removeFromMismatchInformation(MismatchInformation) - Method in class org.biomage.DesignElement.CompositePosition

Method to remove first MismatchInformation from MismatchInformation_list

removeFromMismatchInformation(MismatchInformation) - Method in interface org.biomage.Interface.HasMismatchInformation

Method to remove first MismatchInformation from MismatchInformation_list

removeFromNodeContents(NodeContents) - Method in class org.biomage.HigherLevelAnalysis.Node

Method to remove first NodeContents from NodeContents_list

removeFromNodeContents(NodeContents) - Method in interface org.biomage.Interface.HasNodeContents

Method to remove first NodeContents from NodeContents_list

removeFromNodes(Node) - Method in class org.biomage.HigherLevelAnalysis.Node

Method to remove first Node from Nodes_list

removeFromNodes(Node) - Method in class org.biomage.HigherLevelAnalysis.BioAssayDataCluster

Method to remove first Node from Nodes_list

removeFromNodes(Node) - Method in interface org.biomage.Interface.HasNodes

Method to remove first Node from Nodes_list

removeFromNodeValue(NodeValue) - Method in class org.biomage.HigherLevelAnalysis.Node

Method to remove first NodeValue from NodeValue_list

removeFromNodeValue(NodeValue) - Method in interface org.biomage.Interface.HasNodeValue

Method to remove first NodeValue from NodeValue_list

removeFromOntologyEntries(OntologyEntry) - Method in class org.biomage.BioSequence.BioSequence

Method to remove first OntologyEntry from OntologyEntries_list

removeFromOntologyEntries(OntologyEntry) - Method in interface org.biomage.Interface.HasOntologyEntries

Method to remove first OntologyEntry from OntologyEntries_list

removeFromParameters(OntologyEntry) - Method in class org.biomage.BQS.BibliographicReference

Method to remove first OntologyEntry from Parameters_list

removeFromParameters(OntologyEntry) - Method in interface org.biomage.Interface.HasParameters

Method to remove first OntologyEntry from Parameters_list

removeFromParameterTypes(Parameter) - Method in interface org.biomage.Interface.HasParameterTypes

Method to remove first Parameter from ParameterTypes_list

removeFromParameterTypes(Parameter) - Method in class org.biomage.Protocol.Parameterizable

Method to remove first Parameter from ParameterTypes_list

removeFromParameterValues(ParameterValue) - Method in interface org.biomage.Interface.HasParameterValues

Method to remove first ParameterValue from ParameterValues_list

removeFromParameterValues(ParameterValue) - Method in class org.biomage.Protocol.ParameterizableApplication

Method to remove first ParameterValue from ParameterValues_list

removeFromPerformers(Person) - Method in interface org.biomage.Interface.HasPerformers

Method to remove first Person from Performers_list

removeFromPerformers(Person) - Method in class org.biomage.Protocol.ProtocolApplication

Method to remove first Person from Performers_list

removeFromPhysicalBioAssayData(Image) - Method in class org.biomage.BioAssay.PhysicalBioAssay

Method to remove first Image from PhysicalBioAssayData_list

removeFromPhysicalBioAssayData(Image) - Method in interface org.biomage.Interface.HasPhysicalBioAssayData

Method to remove first Image from PhysicalBioAssayData_list

removeFromPropertySets(NameValueType) - Method in class org.biomage.Common.NameValueType

Method to remove first NameValueType from PropertySets_list

removeFromPropertySets(NameValueType) - Method in class org.biomage.Common.Extendable

Method to remove first NameValueType from PropertySets_list

removeFromPropertySets(NameValueType) - Method in interface org.biomage.Interface.HasPropertySets

Method to remove first NameValueType from PropertySets_list

removeFromProtocol_list(Protocol) - Method in class org.biomage.Protocol.Protocol_package

Method to remove first Protocol from Protocol_list

removeFromProtocolApplications(ProtocolApplication) - Method in class org.biomage.Array.ArrayManufacture

Method to remove first ProtocolApplication from ProtocolApplications_list

removeFromProtocolApplications(ProtocolApplication) - Method in class org.biomage.ArrayDesign.ArrayDesign

Method to remove first ProtocolApplication from ProtocolApplications_list

removeFromProtocolApplications(ProtocolApplication) - Method in class org.biomage.BioEvent.BioEvent

Method to remove first ProtocolApplication from ProtocolApplications_list

removeFromProtocolApplications(ProtocolApplication) - Method in interface org.biomage.Interface.HasProtocolApplications

Method to remove first ProtocolApplication from ProtocolApplications_list

removeFromProviders(Contact) - Method in class org.biomage.Experiment.Experiment

Method to remove first Contact from Providers_list

removeFromProviders(Contact) - Method in interface org.biomage.Interface.HasProviders

Method to remove first Contact from Providers_list

removeFromQualityControlStatistics(NameValueType) - Method in class org.biomage.Array.ArrayManufacture

Method to remove first NameValueType from QualityControlStatistics_list

removeFromQualityControlStatistics(NameValueType) - Method in class org.biomage.BioMaterial.BioMaterial

Method to remove first NameValueType from QualityControlStatistics_list

removeFromQualityControlStatistics(NameValueType) - Method in interface org.biomage.Interface.HasQualityControlStatistics

Method to remove first NameValueType from QualityControlStatistics_list

removeFromQuantitationType_list(QuantitationType) - Method in class org.biomage.QuantitationType.QuantitationType_package

Method to remove first QuantitationType from QuantitationType_list

removeFromQuantitationTypeDimension_list(QuantitationTypeDimension) - Method in class org.biomage.BioAssayData.BioAssayData_package

Method to remove first QuantitationTypeDimension from QuantitationTypeDimension_list

removeFromQuantitationTypeMap_list(QuantitationTypeMap) - Method in class org.biomage.BioAssayData.BioAssayData_package

Method to remove first QuantitationTypeMap from QuantitationTypeMap_list

removeFromQuantitationTypeMaps(QuantitationTypeMap) - Method in class org.biomage.BioAssayData.QuantitationTypeMapping

Method to remove first QuantitationTypeMap from QuantitationTypeMaps_list

removeFromQuantitationTypeMaps(QuantitationTypeMap) - Method in interface org.biomage.Interface.HasQuantitationTypeMaps

Method to remove first QuantitationTypeMap from QuantitationTypeMaps_list

removeFromQuantitationTypes(QuantitationType) - Method in class org.biomage.BioAssayData.QuantitationTypeDimension

Method to remove first QuantitationType from QuantitationTypes_list

removeFromQuantitationTypes(QuantitationType) - Method in interface org.biomage.Interface.HasQuantitationTypes

Method to remove first QuantitationType from QuantitationTypes_list

removeFromReadGroups(SecurityGroup) - Method in class org.biomage.AuditAndSecurity.Security

Method to remove first SecurityGroup from ReadGroups_list

removeFromReadGroups(SecurityGroup) - Method in interface org.biomage.Interface.HasReadGroups

Method to remove first SecurityGroup from ReadGroups_list

removeFromRegions(SeqFeatureLocation) - Method in class org.biomage.BioSequence.SeqFeature

Method to remove first SeqFeatureLocation from Regions_list

removeFromRegions(SeqFeatureLocation) - Method in interface org.biomage.Interface.HasRegions

Method to remove first SeqFeatureLocation from Regions_list

removeFromReporter_list(Reporter) - Method in class org.biomage.DesignElement.DesignElement_package

Method to remove first Reporter from Reporter_list

removeFromReporterCompositeMap_list(ReporterCompositeMap) - Method in class org.biomage.DesignElement.DesignElement_package

Method to remove first ReporterCompositeMap from ReporterCompositeMap_list

removeFromReporterCompositeMaps(ReporterCompositeMap) - Method in class org.biomage.DesignElement.CompositeSequence

Method to remove first ReporterCompositeMap from ReporterCompositeMaps_list

removeFromReporterCompositeMaps(ReporterCompositeMap) - Method in interface org.biomage.Interface.HasReporterCompositeMaps

Method to remove first ReporterCompositeMap from ReporterCompositeMaps_list

removeFromReporterGroup_list(ReporterGroup) - Method in class org.biomage.ArrayDesign.ArrayDesign_package

Method to remove first ReporterGroup from ReporterGroup_list

removeFromReporterGroups(ReporterGroup) - Method in class org.biomage.ArrayDesign.ArrayDesign

Method to remove first ReporterGroup from ReporterGroups_list

removeFromReporterGroups(ReporterGroup) - Method in interface org.biomage.Interface.HasReporterGroups

Method to remove first ReporterGroup from ReporterGroups_list

removeFromReporterPositionSources(ReporterPosition) - Method in class org.biomage.DesignElement.ReporterCompositeMap

Method to remove first ReporterPosition from ReporterPositionSources_list

removeFromReporterPositionSources(ReporterPosition) - Method in interface org.biomage.Interface.HasReporterPositionSources

Method to remove first ReporterPosition from ReporterPositionSources_list

removeFromReporters(Reporter) - Method in class org.biomage.ArrayDesign.ReporterGroup

Method to remove first Reporter from Reporters_list

removeFromReporters(Reporter) - Method in class org.biomage.BioAssayData.ReporterDimension

Method to remove first Reporter from Reporters_list

removeFromReporters(Reporter) - Method in interface org.biomage.Interface.HasReporters

Method to remove first Reporter from Reporters_list

removeFromRoles(OntologyEntry) - Method in class org.biomage.AuditAndSecurity.Contact

Method to remove first OntologyEntry from Roles_list

removeFromRoles(OntologyEntry) - Method in interface org.biomage.Interface.HasRoles

Method to remove first OntologyEntry from Roles_list

removeFromSecurity_list(Security) - Method in class org.biomage.AuditAndSecurity.AuditAndSecurity_package

Method to remove first Security from Security_list

removeFromSecurityGroup_list(SecurityGroup) - Method in class org.biomage.AuditAndSecurity.AuditAndSecurity_package

Method to remove first SecurityGroup from SecurityGroup_list

removeFromSeqFeatures(SeqFeature) - Method in class org.biomage.BioSequence.BioSequence

Method to remove first SeqFeature from SeqFeatures_list

removeFromSeqFeatures(SeqFeature) - Method in interface org.biomage.Interface.HasSeqFeatures

Method to remove first SeqFeature from SeqFeatures_list

removeFromSequenceDatabases(DatabaseEntry) - Method in class org.biomage.BioSequence.BioSequence

Method to remove first DatabaseEntry from SequenceDatabases_list

removeFromSequenceDatabases(DatabaseEntry) - Method in interface org.biomage.Interface.HasSequenceDatabases

Method to remove first DatabaseEntry from SequenceDatabases_list

removeFromSoftware_list(Software) - Method in class org.biomage.Protocol.Protocol_package

Method to remove first Software from Software_list

removeFromSoftwareApplications(SoftwareApplication) - Method in interface org.biomage.Interface.HasSoftwareApplications

Method to remove first SoftwareApplication from SoftwareApplications_list

removeFromSoftwareApplications(SoftwareApplication) - Method in class org.biomage.Protocol.ProtocolApplication

Method to remove first SoftwareApplication from SoftwareApplications_list

removeFromSoftwareManufacturers(Contact) - Method in interface org.biomage.Interface.HasSoftwareManufacturers

Method to remove first Contact from SoftwareManufacturers_list

removeFromSoftwareManufacturers(Contact) - Method in class org.biomage.Protocol.Software

Method to remove first Contact from SoftwareManufacturers_list

removeFromSoftwares(Software) - Method in interface org.biomage.Interface.HasSoftwares

Method to remove first Software from Softwares_list

removeFromSoftwares(Software) - Method in class org.biomage.Protocol.Software

Method to remove first Software from Softwares_list

removeFromSoftwares(Software) - Method in class org.biomage.Protocol.Protocol

Method to remove first Software from Softwares_list

removeFromSoftwares(Software) - Method in class org.biomage.Protocol.Hardware

Method to remove first Software from Softwares_list

removeFromSourceBioAssays(BioAssay) - Method in class org.biomage.BioAssayData.BioAssayMap

Method to remove first BioAssay from SourceBioAssays_list

removeFromSourceBioAssays(BioAssay) - Method in interface org.biomage.Interface.HasSourceBioAssays

Method to remove first BioAssay from SourceBioAssays_list

removeFromSourceBioMaterialMeasurements(BioMaterialMeasurement) - Method in class org.biomage.BioAssay.BioAssayCreation

Method to remove first BioMaterialMeasurement from SourceBioMaterialMeasurements_list

removeFromSourceBioMaterialMeasurements(BioMaterialMeasurement) - Method in class org.biomage.BioMaterial.Treatment

Method to remove first BioMaterialMeasurement from SourceBioMaterialMeasurements_list

removeFromSourceBioMaterialMeasurements(BioMaterialMeasurement) - Method in interface org.biomage.Interface.HasSourceBioMaterialMeasurements

Method to remove first BioMaterialMeasurement from SourceBioMaterialMeasurements_list

removeFromSourcesQuantitationType(QuantitationType) - Method in class org.biomage.BioAssayData.QuantitationTypeMap

Method to remove first QuantitationType from SourcesQuantitationType_list

removeFromSourcesQuantitationType(QuantitationType) - Method in interface org.biomage.Interface.HasSourcesQuantitationType

Method to remove first QuantitationType from SourcesQuantitationType_list

removeFromSubregions(SeqFeatureLocation) - Method in class org.biomage.BioSequence.SeqFeatureLocation

Method to remove first SeqFeatureLocation from Subregions_list

removeFromSubregions(SeqFeatureLocation) - Method in interface org.biomage.Interface.HasSubregions

Method to remove first SeqFeatureLocation from Subregions_list

removeFromSummaryStatistics(NameValueType) - Method in class org.biomage.BioAssayData.BioAssayData

Method to remove first NameValueType from SummaryStatistics_list

removeFromSummaryStatistics(NameValueType) - Method in interface org.biomage.Interface.HasSummaryStatistics

Method to remove first NameValueType from SummaryStatistics_list

removeFromTopLevelBioAssays(BioAssay) - Method in class org.biomage.Experiment.ExperimentDesign

Method to remove first BioAssay from TopLevelBioAssays_list

removeFromTopLevelBioAssays(BioAssay) - Method in interface org.biomage.Interface.HasTopLevelBioAssays

Method to remove first BioAssay from TopLevelBioAssays_list

removeFromTreatments(Treatment) - Method in class org.biomage.BioMaterial.BioMaterial

Method to remove first Treatment from Treatments_list

removeFromTreatments(Treatment) - Method in interface org.biomage.Interface.HasTreatments

Method to remove first Treatment from Treatments_list

removeFromTypes(OntologyEntry) - Method in class org.biomage.ArrayDesign.DesignElementGroup

Method to remove first OntologyEntry from Types_list

removeFromTypes(OntologyEntry) - Method in class org.biomage.Experiment.ExperimentDesign

Method to remove first OntologyEntry from Types_list

removeFromTypes(OntologyEntry) - Method in interface org.biomage.Interface.HasTypes

Method to remove first OntologyEntry from Types_list

removeFromWriteGroups(SecurityGroup) - Method in class org.biomage.AuditAndSecurity.Security

Method to remove first SecurityGroup from WriteGroups_list

removeFromWriteGroups(SecurityGroup) - Method in interface org.biomage.Interface.HasWriteGroups

Method to remove first SecurityGroup from WriteGroups_list

removeFromZoneGroups(ZoneGroup) - Method in class org.biomage.ArrayDesign.PhysicalArrayDesign

Method to remove first ZoneGroup from ZoneGroups_list

removeFromZoneGroups(ZoneGroup) - Method in interface org.biomage.Interface.HasZoneGroups

Method to remove first ZoneGroup from ZoneGroups_list

removeFromZoneLocations(Zone) - Method in class org.biomage.ArrayDesign.ZoneGroup

Method to remove first Zone from ZoneLocations_list

removeFromZoneLocations(Zone) - Method in interface org.biomage.Interface.HasZoneLocations

Method to remove first Zone from ZoneLocations_list

replicateDescription - Variable in class org.biomage.Experiment.ExperimentDesign

Description of the replicate strategy of the Experiment.

reporter - Variable in class org.biomage.DesignElement.ReporterPosition

A reporter that comprises part of a CompositeSequence.

reporter - Variable in class org.biomage.DesignElement.FeatureReporterMap

Associates features with their reporter.

Reporter - class org.biomage.DesignElement.Reporter.

A Design Element that represents some biological material (clone, oligo, etc.) on an array which will report on some biosequence or biosequences.

reporter_list - Variable in class org.biomage.DesignElement.DesignElement_package

A Design Element that represents some biological material (clone, oligo, etc.) on an array which will report on some biosequence or biosequences.

Reporter() - Constructor for class org.biomage.DesignElement.Reporter

Default constructor.

Reporter(Attributes) - Constructor for class org.biomage.DesignElement.Reporter

Attribute constructor.

ReporterCompositeMap - class org.biomage.DesignElement.ReporterCompositeMap.

A ReporterCompositeMap is the description of how source Reporters are transformed into a target CompositeSequences.

reporterCompositeMap_list - Variable in class org.biomage.DesignElement.DesignElement_package

A ReporterCompositeMap is the description of how source Reporters are transformed into a target CompositeSequences.

ReporterCompositeMap() - Constructor for class org.biomage.DesignElement.ReporterCompositeMap

Default constructor.

ReporterCompositeMap(Attributes) - Constructor for class org.biomage.DesignElement.ReporterCompositeMap

Attribute constructor.

reporterCompositeMaps - Variable in class org.biomage.DesignElement.CompositeSequence

A map to the reporters that compose this CompositeSequence.

ReporterDimension - class org.biomage.BioAssayData.ReporterDimension.

Specialized DesignElementDimension to hold Reporters.

ReporterDimension() - Constructor for class org.biomage.BioAssayData.ReporterDimension

Default constructor.

ReporterDimension(Attributes) - Constructor for class org.biomage.BioAssayData.ReporterDimension

Attribute constructor.

ReporterGroup - class org.biomage.ArrayDesign.ReporterGroup.

Allows specification of the type of Reporter Design Element.

reporterGroup_list - Variable in class org.biomage.ArrayDesign.ArrayDesign_package

Allows specification of the type of Reporter Design Element.

ReporterGroup() - Constructor for class org.biomage.ArrayDesign.ReporterGroup

Default constructor.

ReporterGroup(Attributes) - Constructor for class org.biomage.ArrayDesign.ReporterGroup

Attribute constructor.

reporterGroups - Variable in class org.biomage.ArrayDesign.ArrayDesign

The grouping of like Reporter together.

ReporterPosition - class org.biomage.DesignElement.ReporterPosition.

The location in the composite target's sequence to which a source reporter maps.

ReporterPosition() - Constructor for class org.biomage.DesignElement.ReporterPosition

Default constructor.

ReporterPosition(Attributes) - Constructor for class org.biomage.DesignElement.ReporterPosition

Attribute constructor.

reporterPositionSources - Variable in class org.biomage.DesignElement.ReporterCompositeMap

Association to the reporters that compose this CompositeSequence and where those reporters occur.

reporters - Variable in class org.biomage.ArrayDesign.ReporterGroup

The reporters that belong to this group.

reporters - Variable in class org.biomage.BioAssayData.ReporterDimension

The reporters for this dimension.

RIGHT - Variable in class org.biomage.Array.ArrayGroup.OrientationMarkPosition

roles - Variable in class org.biomage.AuditAndSecurity.Contact

The roles (lab equipment sales, contractor, etc.) the contact fills.