A B C D E F G H I J K L M N O P Q R S T U V W Y Z

T

Table - class org.biomage.tools.generate_er.Table.

Table() - Constructor for class org.biomage.tools.generate_er.Table

Description: Constructor for the Table object.

target - Variable in class org.biomage.BioAssay.BioAssayTreatment

The PhysicalBioAssay that was treated.

targetQuantitationType - Variable in class org.biomage.BioAssayData.QuantitationTypeMap

The QuantitationType whose value will be produced from the values of the source QuantitationType according to the Protocol.

targetQuantitationType - Variable in class org.biomage.QuantitationType.ConfidenceIndicator

The association between a ConfidenceIndicator and the QuantitationType its is an indicator for.

technologyType - Variable in class org.biomage.ArrayDesign.FeatureGroup

The technology type of this design.

TEMPERATURE - Variable in class org.biomage.Measurement.Measurement.KindCV

TemperatureUnit - class org.biomage.Measurement.TemperatureUnit.

Temperature

TemperatureUnit.UnitNameCV - class org.biomage.Measurement.TemperatureUnit.UnitNameCV.

Inner class for the enumeration values that the attribute unitNameCV can assume.

TemperatureUnit() - Constructor for class org.biomage.Measurement.TemperatureUnit

Default constructor.

TemperatureUnit(Attributes) - Constructor for class org.biomage.Measurement.TemperatureUnit

Attribute constructor.

TIME - Variable in class org.biomage.Measurement.Measurement.KindCV

TimeUnit - class org.biomage.Measurement.TimeUnit.

Time

TimeUnit.UnitNameCV - class org.biomage.Measurement.TimeUnit.UnitNameCV.

Inner class for the enumeration values that the attribute unitNameCV can assume.

TimeUnit() - Constructor for class org.biomage.Measurement.TimeUnit

Default constructor.

TimeUnit(Attributes) - Constructor for class org.biomage.Measurement.TimeUnit

Attribute constructor.

TOP - Variable in class org.biomage.Array.ArrayGroup.OrientationMarkPosition

topLevelBioAssays - Variable in class org.biomage.Experiment.ExperimentDesign

The organization of the BioAssays as specified by the ExperimentDesign (TimeCourse, Dosage, etc.)

Transformation - class org.biomage.BioAssayData.Transformation.

The process by which derivedBioAssays are created from measuredBioAssays and/or derivedBioAssays.

Transformation() - Constructor for class org.biomage.BioAssayData.Transformation

Default constructor.

Transformation(Attributes) - Constructor for class org.biomage.BioAssayData.Transformation

Attribute constructor.

Treatment - class org.biomage.BioMaterial.Treatment.

The process by which a biomaterial is created (from source biomaterials).

Treatment() - Constructor for class org.biomage.BioMaterial.Treatment

Default constructor.

Treatment(Attributes) - Constructor for class org.biomage.BioMaterial.Treatment

Attribute constructor.

treatments - Variable in class org.biomage.BioMaterial.BioMaterial

This association is one way from BioMaterial to Treatment.

TRUE - Static variable in class org.biomage.tools.generate_er.CreateMageER

the foreign key causes a cascade action

type - Variable in class org.biomage.BioAssay.DerivedBioAssay

The derivation type, for instance collapsed spot replicate, ratio, averaged intensity, bioassay replicates, etc.

type - Variable in class org.biomage.BioMaterial.BioSample

The Type attribute describes the role the BioSample holds in the treatment hierarchy.

type - Variable in class org.biomage.BioSequence.BioSequence

The type of biosequence, i.e.

type - Variable in class org.biomage.Description.DatabaseEntry

The type of record (e.g.

type - Variable in class org.biomage.HigherLevelAnalysis.NodeValue

The type of value, distance, etc.

type - Variable in class org.biomage.Protocol.Software

The type of a piece of Software.

type - Variable in class org.biomage.Protocol.Protocol

The type of a Protocol, a user should provide/use a recommended vocabulary.

type - Variable in class org.biomage.Protocol.Hardware

The type of a piece of Hardware.

types - Variable in class org.biomage.ArrayDesign.DesignElementGroup

The specific type of a feature, reporter, or composite.

types - Variable in class org.biomage.Experiment.ExperimentDesign

Classification of an experiment.