A B C D E F G H I J K L M N O P Q R S T U V W Y Z

W

warningType - Variable in class org.biomage.DesignElement.Reporter

Similar to failType but indicates a warning rather than a failure.

WEEKS - Variable in class org.biomage.Measurement.TimeUnit.UnitNameCV

wrapString(String, int, int) - Static method in class org.biomage.tools.helpers.StringOutputHelpers

Description: Takes the input string and breaks it into appropriate sized pieces.

writeAbstractInfo(CreateFile, Table) - Method in class org.biomage.tools.generate_er.CreateMageER

Description: set the if the the class (table) is abstract

writeAssociationInfo(CreateFile, Table, FileWriter) - Method in class org.biomage.tools.generate_er.CreateMageER

Description: set an association's name, scope, and data type.

writeAssociations(Writer) - Method in class org.biomage.Array.ZoneDefect

writeAssociations This method is responsible for assembling the association data into XML.

writeAssociations(Writer) - Method in class org.biomage.Array.PositionDelta

writeAssociations This method is responsible for assembling the association data into XML.

writeAssociations(Writer) - Method in class org.biomage.Array.ManufactureLIMSBiomaterial

writeAssociations This method is responsible for assembling the association data into XML.

writeAssociations(Writer) - Method in class org.biomage.Array.ManufactureLIMS

writeAssociations This method is responsible for assembling the association data into XML.

writeAssociations(Writer) - Method in class org.biomage.Array.Fiducial

writeAssociations This method is responsible for assembling the association data into XML.

writeAssociations(Writer) - Method in class org.biomage.Array.FeatureDefect

writeAssociations This method is responsible for assembling the association data into XML.

writeAssociations(Writer) - Method in class org.biomage.Array.Array_package

writeAssociations This method is responsible for assembling the association data into XML.

writeAssociations(Writer) - Method in class org.biomage.Array.ArrayManufactureDeviation

writeAssociations This method is responsible for assembling the association data into XML.

writeAssociations(Writer) - Method in class org.biomage.Array.ArrayManufacture

writeAssociations This method is responsible for assembling the association data into XML.

writeAssociations(Writer) - Method in class org.biomage.Array.ArrayGroup

writeAssociations This method is responsible for assembling the association data into XML.

writeAssociations(Writer) - Method in class org.biomage.Array.Array

writeAssociations This method is responsible for assembling the association data into XML.

writeAssociations(Writer) - Method in class org.biomage.ArrayDesign.ZoneLayout

writeAssociations This method is responsible for assembling the association data into XML.

writeAssociations(Writer) - Method in class org.biomage.ArrayDesign.ZoneGroup

writeAssociations This method is responsible for assembling the association data into XML.

writeAssociations(Writer) - Method in class org.biomage.ArrayDesign.Zone

writeAssociations This method is responsible for assembling the association data into XML.

writeAssociations(Writer) - Method in class org.biomage.ArrayDesign.ReporterGroup

writeAssociations This method is responsible for assembling the association data into XML.

writeAssociations(Writer) - Method in class org.biomage.ArrayDesign.PhysicalArrayDesign

writeAssociations This method is responsible for assembling the association data into XML.

writeAssociations(Writer) - Method in class org.biomage.ArrayDesign.FeatureGroup

writeAssociations This method is responsible for assembling the association data into XML.

writeAssociations(Writer) - Method in class org.biomage.ArrayDesign.DesignElementGroup

writeAssociations This method is responsible for assembling the association data into XML.

writeAssociations(Writer) - Method in class org.biomage.ArrayDesign.CompositeGroup

writeAssociations This method is responsible for assembling the association data into XML.

writeAssociations(Writer) - Method in class org.biomage.ArrayDesign.ArrayDesign_package

writeAssociations This method is responsible for assembling the association data into XML.

writeAssociations(Writer) - Method in class org.biomage.ArrayDesign.ArrayDesign

writeAssociations This method is responsible for assembling the association data into XML.

writeAssociations(Writer) - Method in class org.biomage.AuditAndSecurity.SecurityGroup

writeAssociations This method is responsible for assembling the association data into XML.

writeAssociations(Writer) - Method in class org.biomage.AuditAndSecurity.Security

writeAssociations This method is responsible for assembling the association data into XML.

writeAssociations(Writer) - Method in class org.biomage.AuditAndSecurity.Person

writeAssociations This method is responsible for assembling the association data into XML.

writeAssociations(Writer) - Method in class org.biomage.AuditAndSecurity.Organization

writeAssociations This method is responsible for assembling the association data into XML.

writeAssociations(Writer) - Method in class org.biomage.AuditAndSecurity.Contact

writeAssociations This method is responsible for assembling the association data into XML.

writeAssociations(Writer) - Method in class org.biomage.AuditAndSecurity.AuditAndSecurity_package

writeAssociations This method is responsible for assembling the association data into XML.

writeAssociations(Writer) - Method in class org.biomage.AuditAndSecurity.Audit

writeAssociations This method is responsible for assembling the association data into XML.

writeAssociations(Writer) - Method in class org.biomage.BQS.BibliographicReference

writeAssociations This method is responsible for assembling the association data into XML.

writeAssociations(Writer) - Method in class org.biomage.BQS.BQS_package

writeAssociations This method is responsible for assembling the association data into XML.

writeAssociations(Writer) - Method in class org.biomage.BioAssay.PhysicalBioAssay

writeAssociations This method is responsible for assembling the association data into XML.

writeAssociations(Writer) - Method in class org.biomage.BioAssay.MeasuredBioAssay

writeAssociations This method is responsible for assembling the association data into XML.

writeAssociations(Writer) - Method in class org.biomage.BioAssay.ImageAcquisition

writeAssociations This method is responsible for assembling the association data into XML.

writeAssociations(Writer) - Method in class org.biomage.BioAssay.Image

writeAssociations This method is responsible for assembling the association data into XML.

writeAssociations(Writer) - Method in class org.biomage.BioAssay.Hybridization

writeAssociations This method is responsible for assembling the association data into XML.

writeAssociations(Writer) - Method in class org.biomage.BioAssay.FeatureExtraction

writeAssociations This method is responsible for assembling the association data into XML.

writeAssociations(Writer) - Method in class org.biomage.BioAssay.DerivedBioAssay

writeAssociations This method is responsible for assembling the association data into XML.

writeAssociations(Writer) - Method in class org.biomage.BioAssay.Channel

writeAssociations This method is responsible for assembling the association data into XML.

writeAssociations(Writer) - Method in class org.biomage.BioAssay.BioAssay_package

writeAssociations This method is responsible for assembling the association data into XML.

writeAssociations(Writer) - Method in class org.biomage.BioAssay.BioAssayTreatment

writeAssociations This method is responsible for assembling the association data into XML.

writeAssociations(Writer) - Method in class org.biomage.BioAssay.BioAssayCreation

writeAssociations This method is responsible for assembling the association data into XML.

writeAssociations(Writer) - Method in class org.biomage.BioAssay.BioAssay

writeAssociations This method is responsible for assembling the association data into XML.

writeAssociations(Writer) - Method in class org.biomage.BioAssayData.Transformation

writeAssociations This method is responsible for assembling the association data into XML.

writeAssociations(Writer) - Method in class org.biomage.BioAssayData.ReporterDimension

writeAssociations This method is responsible for assembling the association data into XML.

writeAssociations(Writer) - Method in class org.biomage.BioAssayData.QuantitationTypeMapping

writeAssociations This method is responsible for assembling the association data into XML.

writeAssociations(Writer) - Method in class org.biomage.BioAssayData.QuantitationTypeMap

writeAssociations This method is responsible for assembling the association data into XML.

writeAssociations(Writer) - Method in class org.biomage.BioAssayData.QuantitationTypeDimension

writeAssociations This method is responsible for assembling the association data into XML.

writeAssociations(Writer) - Method in class org.biomage.BioAssayData.MeasuredBioAssayData

writeAssociations This method is responsible for assembling the association data into XML.

writeAssociations(Writer) - Method in class org.biomage.BioAssayData.FeatureDimension

writeAssociations This method is responsible for assembling the association data into XML.

writeAssociations(Writer) - Method in class org.biomage.BioAssayData.DesignElementMapping

writeAssociations This method is responsible for assembling the association data into XML.

writeAssociations(Writer) - Method in class org.biomage.BioAssayData.DesignElementMap

writeAssociations This method is responsible for assembling the association data into XML.

writeAssociations(Writer) - Method in class org.biomage.BioAssayData.DesignElementDimension

writeAssociations This method is responsible for assembling the association data into XML.

writeAssociations(Writer) - Method in class org.biomage.BioAssayData.DerivedBioAssayData

writeAssociations This method is responsible for assembling the association data into XML.

writeAssociations(Writer) - Method in class org.biomage.BioAssayData.CompositeSequenceDimension

writeAssociations This method is responsible for assembling the association data into XML.

writeAssociations(Writer) - Method in class org.biomage.BioAssayData.BioDataValues

writeAssociations This method is responsible for assembling the association data into XML.

writeAssociations(Writer) - Method in class org.biomage.BioAssayData.BioDataTuples

writeAssociations This method is responsible for assembling the association data into XML.

writeAssociations(Writer) - Method in class org.biomage.BioAssayData.BioDataCube

writeAssociations This method is responsible for assembling the association data into XML.

writeAssociations(Writer) - Method in class org.biomage.BioAssayData.BioAssayMapping

writeAssociations This method is responsible for assembling the association data into XML.

writeAssociations(Writer) - Method in class org.biomage.BioAssayData.BioAssayMap

writeAssociations This method is responsible for assembling the association data into XML.

writeAssociations(Writer) - Method in class org.biomage.BioAssayData.BioAssayDimension

writeAssociations This method is responsible for assembling the association data into XML.

writeAssociations(Writer) - Method in class org.biomage.BioAssayData.BioAssayDatum

writeAssociations This method is responsible for assembling the association data into XML.

writeAssociations(Writer) - Method in class org.biomage.BioAssayData.BioAssayData_package

writeAssociations This method is responsible for assembling the association data into XML.

writeAssociations(Writer) - Method in class org.biomage.BioAssayData.BioAssayData

writeAssociations This method is responsible for assembling the association data into XML.

writeAssociations(Writer) - Method in class org.biomage.BioEvent.Map

writeAssociations This method is responsible for assembling the association data into XML.

writeAssociations(Writer) - Method in class org.biomage.BioEvent.BioEvent_package

writeAssociations This method is responsible for assembling the association data into XML.

writeAssociations(Writer) - Method in class org.biomage.BioEvent.BioEvent

writeAssociations This method is responsible for assembling the association data into XML.

writeAssociations(Writer) - Method in class org.biomage.BioMaterial.Treatment

writeAssociations This method is responsible for assembling the association data into XML.

writeAssociations(Writer) - Method in class org.biomage.BioMaterial.LabeledExtract

writeAssociations This method is responsible for assembling the association data into XML.

writeAssociations(Writer) - Method in class org.biomage.BioMaterial.CompoundMeasurement

writeAssociations This method is responsible for assembling the association data into XML.

writeAssociations(Writer) - Method in class org.biomage.BioMaterial.Compound

writeAssociations This method is responsible for assembling the association data into XML.

writeAssociations(Writer) - Method in class org.biomage.BioMaterial.BioSource

writeAssociations This method is responsible for assembling the association data into XML.

writeAssociations(Writer) - Method in class org.biomage.BioMaterial.BioSample

writeAssociations This method is responsible for assembling the association data into XML.

writeAssociations(Writer) - Method in class org.biomage.BioMaterial.BioMaterial_package

writeAssociations This method is responsible for assembling the association data into XML.

writeAssociations(Writer) - Method in class org.biomage.BioMaterial.BioMaterialMeasurement

writeAssociations This method is responsible for assembling the association data into XML.

writeAssociations(Writer) - Method in class org.biomage.BioMaterial.BioMaterial

writeAssociations This method is responsible for assembling the association data into XML.

writeAssociations(Writer) - Method in class org.biomage.BioSequence.SequencePosition

writeAssociations This method is responsible for assembling the association data into XML.

writeAssociations(Writer) - Method in class org.biomage.BioSequence.SeqFeatureLocation

writeAssociations This method is responsible for assembling the association data into XML.

writeAssociations(Writer) - Method in class org.biomage.BioSequence.SeqFeature

writeAssociations This method is responsible for assembling the association data into XML.

writeAssociations(Writer) - Method in class org.biomage.BioSequence.BioSequence_package

writeAssociations This method is responsible for assembling the association data into XML.

writeAssociations(Writer) - Method in class org.biomage.BioSequence.BioSequence

writeAssociations This method is responsible for assembling the association data into XML.

writeAssociations(Writer) - Method in class org.biomage.Common.NameValueType

writeAssociations This method is responsible for assembling the association data into XML.

writeAssociations(Writer) - Method in class org.biomage.Common.MAGEJava

writeAssociations This method is responsible for assembling the association data into XML.

writeAssociations(Writer) - Method in class org.biomage.Common.Identifiable

writeAssociations This method is responsible for assembling the association data into XML.

writeAssociations(Writer) - Method in class org.biomage.Common.Extendable

writeAssociations This method is responsible for assembling the association data into XML.

writeAssociations(Writer) - Method in class org.biomage.Common.Describable

writeAssociations This method is responsible for assembling the association data into XML.

writeAssociations(Writer) - Method in class org.biomage.Description.OntologyEntry

writeAssociations This method is responsible for assembling the association data into XML.

writeAssociations(Writer) - Method in class org.biomage.Description.ExternalReference

writeAssociations This method is responsible for assembling the association data into XML.

writeAssociations(Writer) - Method in class org.biomage.Description.Description_package

writeAssociations This method is responsible for assembling the association data into XML.

writeAssociations(Writer) - Method in class org.biomage.Description.Description

writeAssociations This method is responsible for assembling the association data into XML.

writeAssociations(Writer) - Method in class org.biomage.Description.DatabaseEntry

writeAssociations This method is responsible for assembling the association data into XML.

writeAssociations(Writer) - Method in class org.biomage.Description.Database

writeAssociations This method is responsible for assembling the association data into XML.

writeAssociations(Writer) - Method in class org.biomage.DesignElement.ReporterPosition

writeAssociations This method is responsible for assembling the association data into XML.

writeAssociations(Writer) - Method in class org.biomage.DesignElement.ReporterCompositeMap

writeAssociations This method is responsible for assembling the association data into XML.

writeAssociations(Writer) - Method in class org.biomage.DesignElement.Reporter

writeAssociations This method is responsible for assembling the association data into XML.

writeAssociations(Writer) - Method in class org.biomage.DesignElement.Position

writeAssociations This method is responsible for assembling the association data into XML.

writeAssociations(Writer) - Method in class org.biomage.DesignElement.MismatchInformation

writeAssociations This method is responsible for assembling the association data into XML.

writeAssociations(Writer) - Method in class org.biomage.DesignElement.FeatureReporterMap

writeAssociations This method is responsible for assembling the association data into XML.

writeAssociations(Writer) - Method in class org.biomage.DesignElement.FeatureLocation

writeAssociations This method is responsible for assembling the association data into XML.

writeAssociations(Writer) - Method in class org.biomage.DesignElement.FeatureInformation

writeAssociations This method is responsible for assembling the association data into XML.

writeAssociations(Writer) - Method in class org.biomage.DesignElement.Feature

writeAssociations This method is responsible for assembling the association data into XML.

writeAssociations(Writer) - Method in class org.biomage.DesignElement.DesignElement_package

writeAssociations This method is responsible for assembling the association data into XML.

writeAssociations(Writer) - Method in class org.biomage.DesignElement.DesignElement

writeAssociations This method is responsible for assembling the association data into XML.

writeAssociations(Writer) - Method in class org.biomage.DesignElement.CompositeSequence

writeAssociations This method is responsible for assembling the association data into XML.

writeAssociations(Writer) - Method in class org.biomage.DesignElement.CompositePosition

writeAssociations This method is responsible for assembling the association data into XML.

writeAssociations(Writer) - Method in class org.biomage.DesignElement.CompositeCompositeMap

writeAssociations This method is responsible for assembling the association data into XML.

writeAssociations(Writer) - Method in class org.biomage.Experiment.FactorValue

writeAssociations This method is responsible for assembling the association data into XML.

writeAssociations(Writer) - Method in class org.biomage.Experiment.ExperimentalFactor

writeAssociations This method is responsible for assembling the association data into XML.

writeAssociations(Writer) - Method in class org.biomage.Experiment.Experiment_package

writeAssociations This method is responsible for assembling the association data into XML.

writeAssociations(Writer) - Method in class org.biomage.Experiment.ExperimentDesign

writeAssociations This method is responsible for assembling the association data into XML.

writeAssociations(Writer) - Method in class org.biomage.Experiment.Experiment

writeAssociations This method is responsible for assembling the association data into XML.

writeAssociations(Writer) - Method in class org.biomage.HigherLevelAnalysis.NodeValue

writeAssociations This method is responsible for assembling the association data into XML.

writeAssociations(Writer) - Method in class org.biomage.HigherLevelAnalysis.NodeContents

writeAssociations This method is responsible for assembling the association data into XML.

writeAssociations(Writer) - Method in class org.biomage.HigherLevelAnalysis.Node

writeAssociations This method is responsible for assembling the association data into XML.

writeAssociations(Writer) - Method in class org.biomage.HigherLevelAnalysis.HigherLevelAnalysis_package

writeAssociations This method is responsible for assembling the association data into XML.

writeAssociations(Writer) - Method in class org.biomage.HigherLevelAnalysis.BioAssayDataCluster

writeAssociations This method is responsible for assembling the association data into XML.

writeAssociations(Writer) - Method in class org.biomage.Measurement.VolumeUnit

writeAssociations This method is responsible for assembling the association data into XML.

writeAssociations(Writer) - Method in class org.biomage.Measurement.Unit

writeAssociations This method is responsible for assembling the association data into XML.

writeAssociations(Writer) - Method in class org.biomage.Measurement.TimeUnit

writeAssociations This method is responsible for assembling the association data into XML.

writeAssociations(Writer) - Method in class org.biomage.Measurement.TemperatureUnit

writeAssociations This method is responsible for assembling the association data into XML.

writeAssociations(Writer) - Method in class org.biomage.Measurement.QuantityUnit

writeAssociations This method is responsible for assembling the association data into XML.

writeAssociations(Writer) - Method in class org.biomage.Measurement.Measurement_package

writeAssociations This method is responsible for assembling the association data into XML.

writeAssociations(Writer) - Method in class org.biomage.Measurement.Measurement

writeAssociations This method is responsible for assembling the association data into XML.

writeAssociations(Writer) - Method in class org.biomage.Measurement.MassUnit

writeAssociations This method is responsible for assembling the association data into XML.

writeAssociations(Writer) - Method in class org.biomage.Measurement.DistanceUnit

writeAssociations This method is responsible for assembling the association data into XML.

writeAssociations(Writer) - Method in class org.biomage.Measurement.ConcentrationUnit

writeAssociations This method is responsible for assembling the association data into XML.

writeAssociations(Writer) - Method in class org.biomage.Protocol.SoftwareApplication

writeAssociations This method is responsible for assembling the association data into XML.

writeAssociations(Writer) - Method in class org.biomage.Protocol.Software

writeAssociations This method is responsible for assembling the association data into XML.

writeAssociations(Writer) - Method in class org.biomage.Protocol.Protocol_package

writeAssociations This method is responsible for assembling the association data into XML.

writeAssociations(Writer) - Method in class org.biomage.Protocol.ProtocolApplication

writeAssociations This method is responsible for assembling the association data into XML.

writeAssociations(Writer) - Method in class org.biomage.Protocol.Protocol

writeAssociations This method is responsible for assembling the association data into XML.

writeAssociations(Writer) - Method in class org.biomage.Protocol.ParameterizableApplication

writeAssociations This method is responsible for assembling the association data into XML.

writeAssociations(Writer) - Method in class org.biomage.Protocol.Parameterizable

writeAssociations This method is responsible for assembling the association data into XML.

writeAssociations(Writer) - Method in class org.biomage.Protocol.ParameterValue

writeAssociations This method is responsible for assembling the association data into XML.

writeAssociations(Writer) - Method in class org.biomage.Protocol.Parameter

writeAssociations This method is responsible for assembling the association data into XML.

writeAssociations(Writer) - Method in class org.biomage.Protocol.HardwareApplication

writeAssociations This method is responsible for assembling the association data into XML.

writeAssociations(Writer) - Method in class org.biomage.Protocol.Hardware

writeAssociations This method is responsible for assembling the association data into XML.

writeAssociations(Writer) - Method in class org.biomage.QuantitationType.StandardQuantitationType

writeAssociations This method is responsible for assembling the association data into XML.

writeAssociations(Writer) - Method in class org.biomage.QuantitationType.SpecializedQuantitationType

writeAssociations This method is responsible for assembling the association data into XML.

writeAssociations(Writer) - Method in class org.biomage.QuantitationType.Ratio

writeAssociations This method is responsible for assembling the association data into XML.

writeAssociations(Writer) - Method in class org.biomage.QuantitationType.QuantitationType_package

writeAssociations This method is responsible for assembling the association data into XML.

writeAssociations(Writer) - Method in class org.biomage.QuantitationType.QuantitationType

writeAssociations This method is responsible for assembling the association data into XML.

writeAssociations(Writer) - Method in class org.biomage.QuantitationType.PresentAbsent

writeAssociations This method is responsible for assembling the association data into XML.

writeAssociations(Writer) - Method in class org.biomage.QuantitationType.PValue

writeAssociations This method is responsible for assembling the association data into XML.

writeAssociations(Writer) - Method in class org.biomage.QuantitationType.MeasuredSignal

writeAssociations This method is responsible for assembling the association data into XML.

writeAssociations(Writer) - Method in class org.biomage.QuantitationType.ExpectedValue

writeAssociations This method is responsible for assembling the association data into XML.

writeAssociations(Writer) - Method in class org.biomage.QuantitationType.Error

writeAssociations This method is responsible for assembling the association data into XML.

writeAssociations(Writer) - Method in class org.biomage.QuantitationType.DerivedSignal

writeAssociations This method is responsible for assembling the association data into XML.

writeAssociations(Writer) - Method in class org.biomage.QuantitationType.ConfidenceIndicator

writeAssociations This method is responsible for assembling the association data into XML.

writeAttributes(Writer) - Method in class org.biomage.Array.ZoneDefect

writeAttributes This method is responsible for assembling the attribute data into XML.

writeAttributes(Writer) - Method in class org.biomage.Array.PositionDelta

writeAttributes This method is responsible for assembling the attribute data into XML.

writeAttributes(Writer) - Method in class org.biomage.Array.ManufactureLIMSBiomaterial

writeAttributes This method is responsible for assembling the attribute data into XML.

writeAttributes(Writer) - Method in class org.biomage.Array.ManufactureLIMS

writeAttributes This method is responsible for assembling the attribute data into XML.

writeAttributes(Writer) - Method in class org.biomage.Array.Fiducial

writeAttributes This method is responsible for assembling the attribute data into XML.

writeAttributes(Writer) - Method in class org.biomage.Array.FeatureDefect

writeAttributes This method is responsible for assembling the attribute data into XML.

writeAttributes(Writer) - Method in class org.biomage.Array.Array_package

writeAttributes This method is responsible for assembling the attribute data into XML.

writeAttributes(Writer) - Method in class org.biomage.Array.ArrayManufactureDeviation

writeAttributes This method is responsible for assembling the attribute data into XML.

writeAttributes(Writer) - Method in class org.biomage.Array.ArrayManufacture

writeAttributes This method is responsible for assembling the attribute data into XML.

writeAttributes(Writer) - Method in class org.biomage.Array.ArrayGroup

writeAttributes This method is responsible for assembling the attribute data into XML.

writeAttributes(Writer) - Method in class org.biomage.Array.Array

writeAttributes This method is responsible for assembling the attribute data into XML.

writeAttributes(Writer) - Method in class org.biomage.ArrayDesign.ZoneLayout

writeAttributes This method is responsible for assembling the attribute data into XML.

writeAttributes(Writer) - Method in class org.biomage.ArrayDesign.ZoneGroup

writeAttributes This method is responsible for assembling the attribute data into XML.

writeAttributes(Writer) - Method in class org.biomage.ArrayDesign.Zone

writeAttributes This method is responsible for assembling the attribute data into XML.

writeAttributes(Writer) - Method in class org.biomage.ArrayDesign.ReporterGroup

writeAttributes This method is responsible for assembling the attribute data into XML.

writeAttributes(Writer) - Method in class org.biomage.ArrayDesign.PhysicalArrayDesign

writeAttributes This method is responsible for assembling the attribute data into XML.

writeAttributes(Writer) - Method in class org.biomage.ArrayDesign.FeatureGroup

writeAttributes This method is responsible for assembling the attribute data into XML.

writeAttributes(Writer) - Method in class org.biomage.ArrayDesign.DesignElementGroup

writeAttributes This method is responsible for assembling the attribute data into XML.

writeAttributes(Writer) - Method in class org.biomage.ArrayDesign.CompositeGroup

writeAttributes This method is responsible for assembling the attribute data into XML.

writeAttributes(Writer) - Method in class org.biomage.ArrayDesign.ArrayDesign_package

writeAttributes This method is responsible for assembling the attribute data into XML.

writeAttributes(Writer) - Method in class org.biomage.ArrayDesign.ArrayDesign

writeAttributes This method is responsible for assembling the attribute data into XML.

writeAttributes(Writer) - Method in class org.biomage.AuditAndSecurity.SecurityGroup

writeAttributes This method is responsible for assembling the attribute data into XML.

writeAttributes(Writer) - Method in class org.biomage.AuditAndSecurity.Security

writeAttributes This method is responsible for assembling the attribute data into XML.

writeAttributes(Writer) - Method in class org.biomage.AuditAndSecurity.Person

writeAttributes This method is responsible for assembling the attribute data into XML.

writeAttributes(Writer) - Method in class org.biomage.AuditAndSecurity.Organization

writeAttributes This method is responsible for assembling the attribute data into XML.

writeAttributes(Writer) - Method in class org.biomage.AuditAndSecurity.Contact

writeAttributes This method is responsible for assembling the attribute data into XML.

writeAttributes(Writer) - Method in class org.biomage.AuditAndSecurity.AuditAndSecurity_package

writeAttributes This method is responsible for assembling the attribute data into XML.

writeAttributes(Writer) - Method in class org.biomage.AuditAndSecurity.Audit

writeAttributes This method is responsible for assembling the attribute data into XML.

writeAttributes(Writer) - Method in class org.biomage.BQS.BibliographicReference

writeAttributes This method is responsible for assembling the attribute data into XML.

writeAttributes(Writer) - Method in class org.biomage.BQS.BQS_package

writeAttributes This method is responsible for assembling the attribute data into XML.

writeAttributes(Writer) - Method in class org.biomage.BioAssay.PhysicalBioAssay

writeAttributes This method is responsible for assembling the attribute data into XML.

writeAttributes(Writer) - Method in class org.biomage.BioAssay.MeasuredBioAssay

writeAttributes This method is responsible for assembling the attribute data into XML.

writeAttributes(Writer) - Method in class org.biomage.BioAssay.ImageAcquisition

writeAttributes This method is responsible for assembling the attribute data into XML.

writeAttributes(Writer) - Method in class org.biomage.BioAssay.Image

writeAttributes This method is responsible for assembling the attribute data into XML.

writeAttributes(Writer) - Method in class org.biomage.BioAssay.Hybridization

writeAttributes This method is responsible for assembling the attribute data into XML.

writeAttributes(Writer) - Method in class org.biomage.BioAssay.FeatureExtraction

writeAttributes This method is responsible for assembling the attribute data into XML.

writeAttributes(Writer) - Method in class org.biomage.BioAssay.DerivedBioAssay

writeAttributes This method is responsible for assembling the attribute data into XML.

writeAttributes(Writer) - Method in class org.biomage.BioAssay.Channel

writeAttributes This method is responsible for assembling the attribute data into XML.

writeAttributes(Writer) - Method in class org.biomage.BioAssay.BioAssay_package

writeAttributes This method is responsible for assembling the attribute data into XML.

writeAttributes(Writer) - Method in class org.biomage.BioAssay.BioAssayTreatment

writeAttributes This method is responsible for assembling the attribute data into XML.

writeAttributes(Writer) - Method in class org.biomage.BioAssay.BioAssayCreation

writeAttributes This method is responsible for assembling the attribute data into XML.

writeAttributes(Writer) - Method in class org.biomage.BioAssay.BioAssay

writeAttributes This method is responsible for assembling the attribute data into XML.

writeAttributes(Writer) - Method in class org.biomage.BioAssayData.Transformation

writeAttributes This method is responsible for assembling the attribute data into XML.

writeAttributes(Writer) - Method in class org.biomage.BioAssayData.ReporterDimension

writeAttributes This method is responsible for assembling the attribute data into XML.

writeAttributes(Writer) - Method in class org.biomage.BioAssayData.QuantitationTypeMapping

writeAttributes This method is responsible for assembling the attribute data into XML.

writeAttributes(Writer) - Method in class org.biomage.BioAssayData.QuantitationTypeMap

writeAttributes This method is responsible for assembling the attribute data into XML.

writeAttributes(Writer) - Method in class org.biomage.BioAssayData.QuantitationTypeDimension

writeAttributes This method is responsible for assembling the attribute data into XML.

writeAttributes(Writer) - Method in class org.biomage.BioAssayData.MeasuredBioAssayData

writeAttributes This method is responsible for assembling the attribute data into XML.

writeAttributes(Writer) - Method in class org.biomage.BioAssayData.FeatureDimension

writeAttributes This method is responsible for assembling the attribute data into XML.

writeAttributes(Writer) - Method in class org.biomage.BioAssayData.DesignElementMapping

writeAttributes This method is responsible for assembling the attribute data into XML.

writeAttributes(Writer) - Method in class org.biomage.BioAssayData.DesignElementMap

writeAttributes This method is responsible for assembling the attribute data into XML.

writeAttributes(Writer) - Method in class org.biomage.BioAssayData.DesignElementDimension

writeAttributes This method is responsible for assembling the attribute data into XML.

writeAttributes(Writer) - Method in class org.biomage.BioAssayData.DerivedBioAssayData

writeAttributes This method is responsible for assembling the attribute data into XML.

writeAttributes(Writer) - Method in class org.biomage.BioAssayData.CompositeSequenceDimension

writeAttributes This method is responsible for assembling the attribute data into XML.

writeAttributes(Writer) - Method in class org.biomage.BioAssayData.BioDataValues

writeAttributes This method is responsible for assembling the attribute data into XML.

writeAttributes(Writer) - Method in class org.biomage.BioAssayData.BioDataTuples

writeAttributes This method is responsible for assembling the attribute data into XML.

writeAttributes(Writer) - Method in class org.biomage.BioAssayData.BioDataCube

writeAttributes This method is responsible for assembling the attribute data into XML.

writeAttributes(Writer) - Method in class org.biomage.BioAssayData.BioAssayMapping

writeAttributes This method is responsible for assembling the attribute data into XML.

writeAttributes(Writer) - Method in class org.biomage.BioAssayData.BioAssayMap

writeAttributes This method is responsible for assembling the attribute data into XML.

writeAttributes(Writer) - Method in class org.biomage.BioAssayData.BioAssayDimension

writeAttributes This method is responsible for assembling the attribute data into XML.

writeAttributes(Writer) - Method in class org.biomage.BioAssayData.BioAssayDatum

writeAttributes This method is responsible for assembling the attribute data into XML.

writeAttributes(Writer) - Method in class org.biomage.BioAssayData.BioAssayData_package

writeAttributes This method is responsible for assembling the attribute data into XML.

writeAttributes(Writer) - Method in class org.biomage.BioAssayData.BioAssayData

writeAttributes This method is responsible for assembling the attribute data into XML.

writeAttributes(Writer) - Method in class org.biomage.BioEvent.Map

writeAttributes This method is responsible for assembling the attribute data into XML.

writeAttributes(Writer) - Method in class org.biomage.BioEvent.BioEvent_package

writeAttributes This method is responsible for assembling the attribute data into XML.

writeAttributes(Writer) - Method in class org.biomage.BioEvent.BioEvent

writeAttributes This method is responsible for assembling the attribute data into XML.

writeAttributes(Writer) - Method in class org.biomage.BioMaterial.Treatment

writeAttributes This method is responsible for assembling the attribute data into XML.

writeAttributes(Writer) - Method in class org.biomage.BioMaterial.LabeledExtract

writeAttributes This method is responsible for assembling the attribute data into XML.

writeAttributes(Writer) - Method in class org.biomage.BioMaterial.CompoundMeasurement

writeAttributes This method is responsible for assembling the attribute data into XML.

writeAttributes(Writer) - Method in class org.biomage.BioMaterial.Compound

writeAttributes This method is responsible for assembling the attribute data into XML.

writeAttributes(Writer) - Method in class org.biomage.BioMaterial.BioSource

writeAttributes This method is responsible for assembling the attribute data into XML.

writeAttributes(Writer) - Method in class org.biomage.BioMaterial.BioSample

writeAttributes This method is responsible for assembling the attribute data into XML.

writeAttributes(Writer) - Method in class org.biomage.BioMaterial.BioMaterial_package

writeAttributes This method is responsible for assembling the attribute data into XML.

writeAttributes(Writer) - Method in class org.biomage.BioMaterial.BioMaterialMeasurement

writeAttributes This method is responsible for assembling the attribute data into XML.

writeAttributes(Writer) - Method in class org.biomage.BioMaterial.BioMaterial

writeAttributes This method is responsible for assembling the attribute data into XML.

writeAttributes(Writer) - Method in class org.biomage.BioSequence.SequencePosition

writeAttributes This method is responsible for assembling the attribute data into XML.

writeAttributes(Writer) - Method in class org.biomage.BioSequence.SeqFeatureLocation

writeAttributes This method is responsible for assembling the attribute data into XML.

writeAttributes(Writer) - Method in class org.biomage.BioSequence.SeqFeature

writeAttributes This method is responsible for assembling the attribute data into XML.

writeAttributes(Writer) - Method in class org.biomage.BioSequence.BioSequence_package

writeAttributes This method is responsible for assembling the attribute data into XML.

writeAttributes(Writer) - Method in class org.biomage.BioSequence.BioSequence

writeAttributes This method is responsible for assembling the attribute data into XML.

writeAttributes(Writer) - Method in class org.biomage.Common.NameValueType

writeAttributes This method is responsible for assembling the attribute data into XML.

writeAttributes(Writer) - Method in class org.biomage.Common.MAGEJava

writeAttributes This method is responsible for assembling the attribute data into XML.

writeAttributes(Writer) - Method in class org.biomage.Common.Identifiable

writeAttributes This method is responsible for assembling the attribute data into XML.

writeAttributes(Writer) - Method in class org.biomage.Common.Extendable

writeAttributes This method is responsible for assembling the attribute data into XML.

writeAttributes(Writer) - Method in class org.biomage.Common.Describable

writeAttributes This method is responsible for assembling the attribute data into XML.

writeAttributes(Writer) - Method in class org.biomage.Description.OntologyEntry

writeAttributes This method is responsible for assembling the attribute data into XML.

writeAttributes(Writer) - Method in class org.biomage.Description.ExternalReference

writeAttributes This method is responsible for assembling the attribute data into XML.

writeAttributes(Writer) - Method in class org.biomage.Description.Description_package

writeAttributes This method is responsible for assembling the attribute data into XML.

writeAttributes(Writer) - Method in class org.biomage.Description.Description

writeAttributes This method is responsible for assembling the attribute data into XML.

writeAttributes(Writer) - Method in class org.biomage.Description.DatabaseEntry

writeAttributes This method is responsible for assembling the attribute data into XML.

writeAttributes(Writer) - Method in class org.biomage.Description.Database

writeAttributes This method is responsible for assembling the attribute data into XML.

writeAttributes(Writer) - Method in class org.biomage.DesignElement.ReporterPosition

writeAttributes This method is responsible for assembling the attribute data into XML.

writeAttributes(Writer) - Method in class org.biomage.DesignElement.ReporterCompositeMap

writeAttributes This method is responsible for assembling the attribute data into XML.

writeAttributes(Writer) - Method in class org.biomage.DesignElement.Reporter

writeAttributes This method is responsible for assembling the attribute data into XML.

writeAttributes(Writer) - Method in class org.biomage.DesignElement.Position

writeAttributes This method is responsible for assembling the attribute data into XML.

writeAttributes(Writer) - Method in class org.biomage.DesignElement.MismatchInformation

writeAttributes This method is responsible for assembling the attribute data into XML.

writeAttributes(Writer) - Method in class org.biomage.DesignElement.FeatureReporterMap

writeAttributes This method is responsible for assembling the attribute data into XML.

writeAttributes(Writer) - Method in class org.biomage.DesignElement.FeatureLocation

writeAttributes This method is responsible for assembling the attribute data into XML.

writeAttributes(Writer) - Method in class org.biomage.DesignElement.FeatureInformation

writeAttributes This method is responsible for assembling the attribute data into XML.

writeAttributes(Writer) - Method in class org.biomage.DesignElement.Feature

writeAttributes This method is responsible for assembling the attribute data into XML.

writeAttributes(Writer) - Method in class org.biomage.DesignElement.DesignElement_package

writeAttributes This method is responsible for assembling the attribute data into XML.

writeAttributes(Writer) - Method in class org.biomage.DesignElement.DesignElement

writeAttributes This method is responsible for assembling the attribute data into XML.

writeAttributes(Writer) - Method in class org.biomage.DesignElement.CompositeSequence

writeAttributes This method is responsible for assembling the attribute data into XML.

writeAttributes(Writer) - Method in class org.biomage.DesignElement.CompositePosition

writeAttributes This method is responsible for assembling the attribute data into XML.

writeAttributes(Writer) - Method in class org.biomage.DesignElement.CompositeCompositeMap

writeAttributes This method is responsible for assembling the attribute data into XML.

writeAttributes(Writer) - Method in class org.biomage.Experiment.FactorValue

writeAttributes This method is responsible for assembling the attribute data into XML.

writeAttributes(Writer) - Method in class org.biomage.Experiment.ExperimentalFactor

writeAttributes This method is responsible for assembling the attribute data into XML.

writeAttributes(Writer) - Method in class org.biomage.Experiment.Experiment_package

writeAttributes This method is responsible for assembling the attribute data into XML.

writeAttributes(Writer) - Method in class org.biomage.Experiment.ExperimentDesign

writeAttributes This method is responsible for assembling the attribute data into XML.

writeAttributes(Writer) - Method in class org.biomage.Experiment.Experiment

writeAttributes This method is responsible for assembling the attribute data into XML.

writeAttributes(Writer) - Method in class org.biomage.HigherLevelAnalysis.NodeValue

writeAttributes This method is responsible for assembling the attribute data into XML.

writeAttributes(Writer) - Method in class org.biomage.HigherLevelAnalysis.NodeContents

writeAttributes This method is responsible for assembling the attribute data into XML.

writeAttributes(Writer) - Method in class org.biomage.HigherLevelAnalysis.Node

writeAttributes This method is responsible for assembling the attribute data into XML.

writeAttributes(Writer) - Method in class org.biomage.HigherLevelAnalysis.HigherLevelAnalysis_package

writeAttributes This method is responsible for assembling the attribute data into XML.

writeAttributes(Writer) - Method in class org.biomage.HigherLevelAnalysis.BioAssayDataCluster

writeAttributes This method is responsible for assembling the attribute data into XML.

writeAttributes(Writer) - Method in class org.biomage.Measurement.VolumeUnit

writeAttributes This method is responsible for assembling the attribute data into XML.

writeAttributes(Writer) - Method in class org.biomage.Measurement.Unit

writeAttributes This method is responsible for assembling the attribute data into XML.

writeAttributes(Writer) - Method in class org.biomage.Measurement.TimeUnit

writeAttributes This method is responsible for assembling the attribute data into XML.

writeAttributes(Writer) - Method in class org.biomage.Measurement.TemperatureUnit

writeAttributes This method is responsible for assembling the attribute data into XML.

writeAttributes(Writer) - Method in class org.biomage.Measurement.QuantityUnit

writeAttributes This method is responsible for assembling the attribute data into XML.

writeAttributes(Writer) - Method in class org.biomage.Measurement.Measurement_package

writeAttributes This method is responsible for assembling the attribute data into XML.

writeAttributes(Writer) - Method in class org.biomage.Measurement.Measurement

writeAttributes This method is responsible for assembling the attribute data into XML.

writeAttributes(Writer) - Method in class org.biomage.Measurement.MassUnit

writeAttributes This method is responsible for assembling the attribute data into XML.

writeAttributes(Writer) - Method in class org.biomage.Measurement.DistanceUnit

writeAttributes This method is responsible for assembling the attribute data into XML.

writeAttributes(Writer) - Method in class org.biomage.Measurement.ConcentrationUnit

writeAttributes This method is responsible for assembling the attribute data into XML.

writeAttributes(Writer) - Method in class org.biomage.Protocol.SoftwareApplication

writeAttributes This method is responsible for assembling the attribute data into XML.

writeAttributes(Writer) - Method in class org.biomage.Protocol.Software

writeAttributes This method is responsible for assembling the attribute data into XML.

writeAttributes(Writer) - Method in class org.biomage.Protocol.Protocol_package

writeAttributes This method is responsible for assembling the attribute data into XML.

writeAttributes(Writer) - Method in class org.biomage.Protocol.ProtocolApplication

writeAttributes This method is responsible for assembling the attribute data into XML.

writeAttributes(Writer) - Method in class org.biomage.Protocol.Protocol

writeAttributes This method is responsible for assembling the attribute data into XML.

writeAttributes(Writer) - Method in class org.biomage.Protocol.ParameterizableApplication

writeAttributes This method is responsible for assembling the attribute data into XML.

writeAttributes(Writer) - Method in class org.biomage.Protocol.Parameterizable

writeAttributes This method is responsible for assembling the attribute data into XML.

writeAttributes(Writer) - Method in class org.biomage.Protocol.ParameterValue

writeAttributes This method is responsible for assembling the attribute data into XML.

writeAttributes(Writer) - Method in class org.biomage.Protocol.Parameter

writeAttributes This method is responsible for assembling the attribute data into XML.

writeAttributes(Writer) - Method in class org.biomage.Protocol.HardwareApplication

writeAttributes This method is responsible for assembling the attribute data into XML.

writeAttributes(Writer) - Method in class org.biomage.Protocol.Hardware

writeAttributes This method is responsible for assembling the attribute data into XML.

writeAttributes(Writer) - Method in class org.biomage.QuantitationType.StandardQuantitationType

writeAttributes This method is responsible for assembling the attribute data into XML.

writeAttributes(Writer) - Method in class org.biomage.QuantitationType.SpecializedQuantitationType

writeAttributes This method is responsible for assembling the attribute data into XML.

writeAttributes(Writer) - Method in class org.biomage.QuantitationType.Ratio

writeAttributes This method is responsible for assembling the attribute data into XML.

writeAttributes(Writer) - Method in class org.biomage.QuantitationType.QuantitationType_package

writeAttributes This method is responsible for assembling the attribute data into XML.

writeAttributes(Writer) - Method in class org.biomage.QuantitationType.QuantitationType

writeAttributes This method is responsible for assembling the attribute data into XML.

writeAttributes(Writer) - Method in class org.biomage.QuantitationType.PresentAbsent

writeAttributes This method is responsible for assembling the attribute data into XML.

writeAttributes(Writer) - Method in class org.biomage.QuantitationType.PValue

writeAttributes This method is responsible for assembling the attribute data into XML.

writeAttributes(Writer) - Method in class org.biomage.QuantitationType.MeasuredSignal

writeAttributes This method is responsible for assembling the attribute data into XML.

writeAttributes(Writer) - Method in class org.biomage.QuantitationType.ExpectedValue

writeAttributes This method is responsible for assembling the attribute data into XML.

writeAttributes(Writer) - Method in class org.biomage.QuantitationType.Error

writeAttributes This method is responsible for assembling the attribute data into XML.

writeAttributes(Writer) - Method in class org.biomage.QuantitationType.DerivedSignal

writeAttributes This method is responsible for assembling the attribute data into XML.

writeAttributes(Writer) - Method in class org.biomage.QuantitationType.ConfidenceIndicator

writeAttributes This method is responsible for assembling the attribute data into XML.

writeAttrInfo(CreateFile, Table) - Method in class org.biomage.tools.generate_er.CreateMageER

Description: set an attribute's name, scope, and data type.

writeBaseClassName(CreateFile, Table) - Method in class org.biomage.tools.generate_er.CreateMageER

Description: set the base class name for the class

writeCommentBody(FileWriter, Vector, String, String) - Static method in class org.biomage.tools.helpers.StringOutputHelpers

Description: Writes out the body of a comment.

writeCPPComment(FileWriter, String, int, String, boolean, boolean) - Static method in class org.biomage.tools.helpers.StringOutputHelpers

Description: Takes the comment, formats it for C++ and outputs it.

writeDTDComment(FileWriter, String, String, boolean, boolean) - Static method in class org.biomage.tools.helpers.StringOutputHelpers

Description: Takes the comment, formats it for JavaDoc and outputs it.

writeGroups - Variable in class org.biomage.AuditAndSecurity.Security

Specifies which security groups have write permission.

writeHeader(FileWriter, File) - Static method in class org.biomage.tools.helpers.StringOutputHelpers

Description: Writes the header information out to the file.

writeJavaComment(FileWriter, String, int, String, boolean, boolean) - Static method in class org.biomage.tools.helpers.StringOutputHelpers

Description: Takes the comment, formats it for JavaDoc and outputs it.

WriteMAGEER(Map, FileWriter, FileWriter) - Method in class org.biomage.tools.generate_er.CreateMageER

Description: traverse the map and write out the MAGEER.xml

writeMAGEML(Writer) - Method in class org.biomage.Array.ZoneDefect

writeMAGEML This method is responsible for assembling the attribute and association data into XML.

writeMAGEML(Writer) - Method in class org.biomage.Array.PositionDelta

writeMAGEML This method is responsible for assembling the attribute and association data into XML.

writeMAGEML(Writer) - Method in class org.biomage.Array.ManufactureLIMSBiomaterial

writeMAGEML This method is responsible for assembling the attribute and association data into XML.

writeMAGEML(Writer) - Method in class org.biomage.Array.ManufactureLIMS

writeMAGEML This method is responsible for assembling the attribute and association data into XML.

writeMAGEML(Writer) - Method in class org.biomage.Array.Fiducial

writeMAGEML This method is responsible for assembling the attribute and association data into XML.

writeMAGEML(Writer) - Method in class org.biomage.Array.FeatureDefect

writeMAGEML This method is responsible for assembling the attribute and association data into XML.

writeMAGEML(Writer) - Method in class org.biomage.Array.Array_package

writeMAGEML This method is responsible for assembling the attribute and association data into XML.

writeMAGEML(Writer) - Method in class org.biomage.Array.ArrayManufactureDeviation

writeMAGEML This method is responsible for assembling the attribute and association data into XML.

writeMAGEML(Writer) - Method in class org.biomage.Array.ArrayManufacture

writeMAGEML This method is responsible for assembling the attribute and association data into XML.

writeMAGEML(Writer) - Method in class org.biomage.Array.ArrayGroup

writeMAGEML This method is responsible for assembling the attribute and association data into XML.

writeMAGEML(Writer) - Method in class org.biomage.Array.Array

writeMAGEML This method is responsible for assembling the attribute and association data into XML.

writeMAGEML(Writer) - Method in class org.biomage.ArrayDesign.ZoneLayout

writeMAGEML This method is responsible for assembling the attribute and association data into XML.

writeMAGEML(Writer) - Method in class org.biomage.ArrayDesign.ZoneGroup

writeMAGEML This method is responsible for assembling the attribute and association data into XML.

writeMAGEML(Writer) - Method in class org.biomage.ArrayDesign.Zone

writeMAGEML This method is responsible for assembling the attribute and association data into XML.

writeMAGEML(Writer) - Method in class org.biomage.ArrayDesign.ReporterGroup

writeMAGEML This method is responsible for assembling the attribute and association data into XML.

writeMAGEML(Writer) - Method in class org.biomage.ArrayDesign.PhysicalArrayDesign

writeMAGEML This method is responsible for assembling the attribute and association data into XML.

writeMAGEML(Writer) - Method in class org.biomage.ArrayDesign.FeatureGroup

writeMAGEML This method is responsible for assembling the attribute and association data into XML.

writeMAGEML(Writer) - Method in class org.biomage.ArrayDesign.DesignElementGroup

writeMAGEML This method is responsible for assembling the attribute and association data into XML.

writeMAGEML(Writer) - Method in class org.biomage.ArrayDesign.CompositeGroup

writeMAGEML This method is responsible for assembling the attribute and association data into XML.

writeMAGEML(Writer) - Method in class org.biomage.ArrayDesign.ArrayDesign_package

writeMAGEML This method is responsible for assembling the attribute and association data into XML.

writeMAGEML(Writer) - Method in class org.biomage.ArrayDesign.ArrayDesign

writeMAGEML This method is responsible for assembling the attribute and association data into XML.

writeMAGEML(Writer) - Method in class org.biomage.AuditAndSecurity.SecurityGroup

writeMAGEML This method is responsible for assembling the attribute and association data into XML.

writeMAGEML(Writer) - Method in class org.biomage.AuditAndSecurity.Security

writeMAGEML This method is responsible for assembling the attribute and association data into XML.

writeMAGEML(Writer) - Method in class org.biomage.AuditAndSecurity.Person

writeMAGEML This method is responsible for assembling the attribute and association data into XML.

writeMAGEML(Writer) - Method in class org.biomage.AuditAndSecurity.Organization

writeMAGEML This method is responsible for assembling the attribute and association data into XML.

writeMAGEML(Writer) - Method in class org.biomage.AuditAndSecurity.Contact

writeMAGEML This method is responsible for assembling the attribute and association data into XML.

writeMAGEML(Writer) - Method in class org.biomage.AuditAndSecurity.AuditAndSecurity_package

writeMAGEML This method is responsible for assembling the attribute and association data into XML.

writeMAGEML(Writer) - Method in class org.biomage.AuditAndSecurity.Audit

writeMAGEML This method is responsible for assembling the attribute and association data into XML.

writeMAGEML(Writer) - Method in class org.biomage.BQS.BibliographicReference

writeMAGEML This method is responsible for assembling the attribute and association data into XML.

writeMAGEML(Writer) - Method in class org.biomage.BQS.BQS_package

writeMAGEML This method is responsible for assembling the attribute and association data into XML.

writeMAGEML(Writer) - Method in class org.biomage.BioAssay.PhysicalBioAssay

writeMAGEML This method is responsible for assembling the attribute and association data into XML.

writeMAGEML(Writer) - Method in class org.biomage.BioAssay.MeasuredBioAssay

writeMAGEML This method is responsible for assembling the attribute and association data into XML.

writeMAGEML(Writer) - Method in class org.biomage.BioAssay.ImageAcquisition

writeMAGEML This method is responsible for assembling the attribute and association data into XML.

writeMAGEML(Writer) - Method in class org.biomage.BioAssay.Image

writeMAGEML This method is responsible for assembling the attribute and association data into XML.

writeMAGEML(Writer) - Method in class org.biomage.BioAssay.Hybridization

writeMAGEML This method is responsible for assembling the attribute and association data into XML.

writeMAGEML(Writer) - Method in class org.biomage.BioAssay.FeatureExtraction

writeMAGEML This method is responsible for assembling the attribute and association data into XML.

writeMAGEML(Writer) - Method in class org.biomage.BioAssay.DerivedBioAssay

writeMAGEML This method is responsible for assembling the attribute and association data into XML.

writeMAGEML(Writer) - Method in class org.biomage.BioAssay.Channel

writeMAGEML This method is responsible for assembling the attribute and association data into XML.

writeMAGEML(Writer) - Method in class org.biomage.BioAssay.BioAssay_package

writeMAGEML This method is responsible for assembling the attribute and association data into XML.

writeMAGEML(Writer) - Method in class org.biomage.BioAssay.BioAssayTreatment

writeMAGEML This method is responsible for assembling the attribute and association data into XML.

writeMAGEML(Writer) - Method in class org.biomage.BioAssay.BioAssayCreation

writeMAGEML This method is responsible for assembling the attribute and association data into XML.

writeMAGEML(Writer) - Method in class org.biomage.BioAssay.BioAssay

writeMAGEML This method is responsible for assembling the attribute and association data into XML.

writeMAGEML(Writer) - Method in class org.biomage.BioAssayData.Transformation

writeMAGEML This method is responsible for assembling the attribute and association data into XML.

writeMAGEML(Writer) - Method in class org.biomage.BioAssayData.ReporterDimension

writeMAGEML This method is responsible for assembling the attribute and association data into XML.

writeMAGEML(Writer) - Method in class org.biomage.BioAssayData.QuantitationTypeMapping

writeMAGEML This method is responsible for assembling the attribute and association data into XML.

writeMAGEML(Writer) - Method in class org.biomage.BioAssayData.QuantitationTypeMap

writeMAGEML This method is responsible for assembling the attribute and association data into XML.

writeMAGEML(Writer) - Method in class org.biomage.BioAssayData.QuantitationTypeDimension

writeMAGEML This method is responsible for assembling the attribute and association data into XML.

writeMAGEML(Writer) - Method in class org.biomage.BioAssayData.MeasuredBioAssayData

writeMAGEML This method is responsible for assembling the attribute and association data into XML.

writeMAGEML(Writer) - Method in class org.biomage.BioAssayData.FeatureDimension

writeMAGEML This method is responsible for assembling the attribute and association data into XML.

writeMAGEML(Writer) - Method in class org.biomage.BioAssayData.DesignElementMapping

writeMAGEML This method is responsible for assembling the attribute and association data into XML.

writeMAGEML(Writer) - Method in class org.biomage.BioAssayData.DesignElementMap

writeMAGEML This method is responsible for assembling the attribute and association data into XML.

writeMAGEML(Writer) - Method in class org.biomage.BioAssayData.DesignElementDimension

writeMAGEML This method is responsible for assembling the attribute and association data into XML.

writeMAGEML(Writer) - Method in class org.biomage.BioAssayData.DerivedBioAssayData

writeMAGEML This method is responsible for assembling the attribute and association data into XML.

writeMAGEML(Writer) - Method in class org.biomage.BioAssayData.CompositeSequenceDimension

writeMAGEML This method is responsible for assembling the attribute and association data into XML.

writeMAGEML(Writer) - Method in class org.biomage.BioAssayData.BioDataValues

writeMAGEML This method is responsible for assembling the attribute and association data into XML.

writeMAGEML(Writer) - Method in class org.biomage.BioAssayData.BioDataTuples

writeMAGEML This method is responsible for assembling the attribute and association data into XML.

writeMAGEML(Writer) - Method in class org.biomage.BioAssayData.BioDataCube

writeMAGEML This method is responsible for assembling the attribute and association data into XML.

writeMAGEML(Writer) - Method in class org.biomage.BioAssayData.BioAssayMapping

writeMAGEML This method is responsible for assembling the attribute and association data into XML.

writeMAGEML(Writer) - Method in class org.biomage.BioAssayData.BioAssayMap

writeMAGEML This method is responsible for assembling the attribute and association data into XML.

writeMAGEML(Writer) - Method in class org.biomage.BioAssayData.BioAssayDimension

writeMAGEML This method is responsible for assembling the attribute and association data into XML.

writeMAGEML(Writer) - Method in class org.biomage.BioAssayData.BioAssayDatum

writeMAGEML This method is responsible for assembling the attribute and association data into XML.

writeMAGEML(Writer) - Method in class org.biomage.BioAssayData.BioAssayData_package

writeMAGEML This method is responsible for assembling the attribute and association data into XML.

writeMAGEML(Writer) - Method in class org.biomage.BioAssayData.BioAssayData

writeMAGEML This method is responsible for assembling the attribute and association data into XML.

writeMAGEML(Writer) - Method in class org.biomage.BioEvent.Map

writeMAGEML This method is responsible for assembling the attribute and association data into XML.

writeMAGEML(Writer) - Method in class org.biomage.BioEvent.BioEvent_package

writeMAGEML This method is responsible for assembling the attribute and association data into XML.

writeMAGEML(Writer) - Method in class org.biomage.BioEvent.BioEvent

writeMAGEML This method is responsible for assembling the attribute and association data into XML.

writeMAGEML(Writer) - Method in class org.biomage.BioMaterial.Treatment

writeMAGEML This method is responsible for assembling the attribute and association data into XML.

writeMAGEML(Writer) - Method in class org.biomage.BioMaterial.LabeledExtract

writeMAGEML This method is responsible for assembling the attribute and association data into XML.

writeMAGEML(Writer) - Method in class org.biomage.BioMaterial.CompoundMeasurement

writeMAGEML This method is responsible for assembling the attribute and association data into XML.

writeMAGEML(Writer) - Method in class org.biomage.BioMaterial.Compound

writeMAGEML This method is responsible for assembling the attribute and association data into XML.

writeMAGEML(Writer) - Method in class org.biomage.BioMaterial.BioSource

writeMAGEML This method is responsible for assembling the attribute and association data into XML.

writeMAGEML(Writer) - Method in class org.biomage.BioMaterial.BioSample

writeMAGEML This method is responsible for assembling the attribute and association data into XML.

writeMAGEML(Writer) - Method in class org.biomage.BioMaterial.BioMaterial_package

writeMAGEML This method is responsible for assembling the attribute and association data into XML.

writeMAGEML(Writer) - Method in class org.biomage.BioMaterial.BioMaterialMeasurement

writeMAGEML This method is responsible for assembling the attribute and association data into XML.

writeMAGEML(Writer) - Method in class org.biomage.BioMaterial.BioMaterial

writeMAGEML This method is responsible for assembling the attribute and association data into XML.

writeMAGEML(Writer) - Method in class org.biomage.BioSequence.SequencePosition

writeMAGEML This method is responsible for assembling the attribute and association data into XML.

writeMAGEML(Writer) - Method in class org.biomage.BioSequence.SeqFeatureLocation

writeMAGEML This method is responsible for assembling the attribute and association data into XML.

writeMAGEML(Writer) - Method in class org.biomage.BioSequence.SeqFeature

writeMAGEML This method is responsible for assembling the attribute and association data into XML.

writeMAGEML(Writer) - Method in class org.biomage.BioSequence.BioSequence_package

writeMAGEML This method is responsible for assembling the attribute and association data into XML.

writeMAGEML(Writer) - Method in class org.biomage.BioSequence.BioSequence

writeMAGEML This method is responsible for assembling the attribute and association data into XML.

writeMAGEML(Writer) - Method in class org.biomage.Common.NameValueType

writeMAGEML This method is responsible for assembling the attribute and association data into XML.

writeMAGEML(Writer) - Method in class org.biomage.Common.MAGEJava

writeMAGEML This method is responsible for assembling the attribute and association data into XML.

writeMAGEML(Writer) - Method in class org.biomage.Common.Identifiable

writeMAGEML This method is responsible for assembling the attribute and association data into XML.

writeMAGEML(Writer) - Method in class org.biomage.Common.Extendable

writeMAGEML This method is responsible for assembling the attribute and association data into XML.

writeMAGEML(Writer) - Method in class org.biomage.Common.Describable

writeMAGEML This method is responsible for assembling the attribute and association data into XML.

writeMAGEML(Writer) - Method in class org.biomage.Description.OntologyEntry

writeMAGEML This method is responsible for assembling the attribute and association data into XML.

writeMAGEML(Writer) - Method in class org.biomage.Description.ExternalReference

writeMAGEML This method is responsible for assembling the attribute and association data into XML.

writeMAGEML(Writer) - Method in class org.biomage.Description.Description_package

writeMAGEML This method is responsible for assembling the attribute and association data into XML.

writeMAGEML(Writer) - Method in class org.biomage.Description.Description

writeMAGEML This method is responsible for assembling the attribute and association data into XML.

writeMAGEML(Writer) - Method in class org.biomage.Description.DatabaseEntry

writeMAGEML This method is responsible for assembling the attribute and association data into XML.

writeMAGEML(Writer) - Method in class org.biomage.Description.Database

writeMAGEML This method is responsible for assembling the attribute and association data into XML.

writeMAGEML(Writer) - Method in class org.biomage.DesignElement.ReporterPosition

writeMAGEML This method is responsible for assembling the attribute and association data into XML.

writeMAGEML(Writer) - Method in class org.biomage.DesignElement.ReporterCompositeMap

writeMAGEML This method is responsible for assembling the attribute and association data into XML.

writeMAGEML(Writer) - Method in class org.biomage.DesignElement.Reporter

writeMAGEML This method is responsible for assembling the attribute and association data into XML.

writeMAGEML(Writer) - Method in class org.biomage.DesignElement.Position

writeMAGEML This method is responsible for assembling the attribute and association data into XML.

writeMAGEML(Writer) - Method in class org.biomage.DesignElement.MismatchInformation

writeMAGEML This method is responsible for assembling the attribute and association data into XML.

writeMAGEML(Writer) - Method in class org.biomage.DesignElement.FeatureReporterMap

writeMAGEML This method is responsible for assembling the attribute and association data into XML.

writeMAGEML(Writer) - Method in class org.biomage.DesignElement.FeatureLocation

writeMAGEML This method is responsible for assembling the attribute and association data into XML.

writeMAGEML(Writer) - Method in class org.biomage.DesignElement.FeatureInformation

writeMAGEML This method is responsible for assembling the attribute and association data into XML.

writeMAGEML(Writer) - Method in class org.biomage.DesignElement.Feature

writeMAGEML This method is responsible for assembling the attribute and association data into XML.

writeMAGEML(Writer) - Method in class org.biomage.DesignElement.DesignElement_package

writeMAGEML This method is responsible for assembling the attribute and association data into XML.

writeMAGEML(Writer) - Method in class org.biomage.DesignElement.DesignElement

writeMAGEML This method is responsible for assembling the attribute and association data into XML.

writeMAGEML(Writer) - Method in class org.biomage.DesignElement.CompositeSequence

writeMAGEML This method is responsible for assembling the attribute and association data into XML.

writeMAGEML(Writer) - Method in class org.biomage.DesignElement.CompositePosition

writeMAGEML This method is responsible for assembling the attribute and association data into XML.

writeMAGEML(Writer) - Method in class org.biomage.DesignElement.CompositeCompositeMap

writeMAGEML This method is responsible for assembling the attribute and association data into XML.

writeMAGEML(Writer) - Method in class org.biomage.Experiment.FactorValue

writeMAGEML This method is responsible for assembling the attribute and association data into XML.

writeMAGEML(Writer) - Method in class org.biomage.Experiment.ExperimentalFactor

writeMAGEML This method is responsible for assembling the attribute and association data into XML.

writeMAGEML(Writer) - Method in class org.biomage.Experiment.Experiment_package

writeMAGEML This method is responsible for assembling the attribute and association data into XML.

writeMAGEML(Writer) - Method in class org.biomage.Experiment.ExperimentDesign

writeMAGEML This method is responsible for assembling the attribute and association data into XML.

writeMAGEML(Writer) - Method in class org.biomage.Experiment.Experiment

writeMAGEML This method is responsible for assembling the attribute and association data into XML.

writeMAGEML(Writer) - Method in class org.biomage.HigherLevelAnalysis.NodeValue

writeMAGEML This method is responsible for assembling the attribute and association data into XML.

writeMAGEML(Writer) - Method in class org.biomage.HigherLevelAnalysis.NodeContents

writeMAGEML This method is responsible for assembling the attribute and association data into XML.

writeMAGEML(Writer) - Method in class org.biomage.HigherLevelAnalysis.Node

writeMAGEML This method is responsible for assembling the attribute and association data into XML.

writeMAGEML(Writer) - Method in class org.biomage.HigherLevelAnalysis.HigherLevelAnalysis_package

writeMAGEML This method is responsible for assembling the attribute and association data into XML.

writeMAGEML(Writer) - Method in class org.biomage.HigherLevelAnalysis.BioAssayDataCluster

writeMAGEML This method is responsible for assembling the attribute and association data into XML.

writeMAGEML(Writer) - Method in class org.biomage.Measurement.VolumeUnit

writeMAGEML This method is responsible for assembling the attribute and association data into XML.

writeMAGEML(Writer) - Method in class org.biomage.Measurement.Unit

writeMAGEML This method is responsible for assembling the attribute and association data into XML.

writeMAGEML(Writer) - Method in class org.biomage.Measurement.TimeUnit

writeMAGEML This method is responsible for assembling the attribute and association data into XML.

writeMAGEML(Writer) - Method in class org.biomage.Measurement.TemperatureUnit

writeMAGEML This method is responsible for assembling the attribute and association data into XML.

writeMAGEML(Writer) - Method in class org.biomage.Measurement.QuantityUnit

writeMAGEML This method is responsible for assembling the attribute and association data into XML.

writeMAGEML(Writer) - Method in class org.biomage.Measurement.Measurement_package

writeMAGEML This method is responsible for assembling the attribute and association data into XML.

writeMAGEML(Writer) - Method in class org.biomage.Measurement.Measurement

writeMAGEML This method is responsible for assembling the attribute and association data into XML.

writeMAGEML(Writer) - Method in class org.biomage.Measurement.MassUnit

writeMAGEML This method is responsible for assembling the attribute and association data into XML.

writeMAGEML(Writer) - Method in class org.biomage.Measurement.DistanceUnit

writeMAGEML This method is responsible for assembling the attribute and association data into XML.

writeMAGEML(Writer) - Method in class org.biomage.Measurement.ConcentrationUnit

writeMAGEML This method is responsible for assembling the attribute and association data into XML.

writeMAGEML(Writer) - Method in class org.biomage.Protocol.SoftwareApplication

writeMAGEML This method is responsible for assembling the attribute and association data into XML.

writeMAGEML(Writer) - Method in class org.biomage.Protocol.Software

writeMAGEML This method is responsible for assembling the attribute and association data into XML.

writeMAGEML(Writer) - Method in class org.biomage.Protocol.Protocol_package

writeMAGEML This method is responsible for assembling the attribute and association data into XML.

writeMAGEML(Writer) - Method in class org.biomage.Protocol.ProtocolApplication

writeMAGEML This method is responsible for assembling the attribute and association data into XML.

writeMAGEML(Writer) - Method in class org.biomage.Protocol.Protocol

writeMAGEML This method is responsible for assembling the attribute and association data into XML.

writeMAGEML(Writer) - Method in class org.biomage.Protocol.ParameterizableApplication

writeMAGEML This method is responsible for assembling the attribute and association data into XML.

writeMAGEML(Writer) - Method in class org.biomage.Protocol.Parameterizable

writeMAGEML This method is responsible for assembling the attribute and association data into XML.

writeMAGEML(Writer) - Method in class org.biomage.Protocol.ParameterValue

writeMAGEML This method is responsible for assembling the attribute and association data into XML.

writeMAGEML(Writer) - Method in class org.biomage.Protocol.Parameter

writeMAGEML This method is responsible for assembling the attribute and association data into XML.

writeMAGEML(Writer) - Method in class org.biomage.Protocol.HardwareApplication

writeMAGEML This method is responsible for assembling the attribute and association data into XML.

writeMAGEML(Writer) - Method in class org.biomage.Protocol.Hardware

writeMAGEML This method is responsible for assembling the attribute and association data into XML.

writeMAGEML(Writer) - Method in class org.biomage.QuantitationType.StandardQuantitationType

writeMAGEML This method is responsible for assembling the attribute and association data into XML.

writeMAGEML(Writer) - Method in class org.biomage.QuantitationType.SpecializedQuantitationType

writeMAGEML This method is responsible for assembling the attribute and association data into XML.

writeMAGEML(Writer) - Method in class org.biomage.QuantitationType.Ratio

writeMAGEML This method is responsible for assembling the attribute and association data into XML.

writeMAGEML(Writer) - Method in class org.biomage.QuantitationType.QuantitationType_package

writeMAGEML This method is responsible for assembling the attribute and association data into XML.

writeMAGEML(Writer) - Method in class org.biomage.QuantitationType.QuantitationType

writeMAGEML This method is responsible for assembling the attribute and association data into XML.

writeMAGEML(Writer) - Method in class org.biomage.QuantitationType.PresentAbsent

writeMAGEML This method is responsible for assembling the attribute and association data into XML.

writeMAGEML(Writer) - Method in class org.biomage.QuantitationType.PValue

writeMAGEML This method is responsible for assembling the attribute and association data into XML.

writeMAGEML(Writer) - Method in class org.biomage.QuantitationType.MeasuredSignal

writeMAGEML This method is responsible for assembling the attribute and association data into XML.

writeMAGEML(Writer) - Method in class org.biomage.QuantitationType.ExpectedValue

writeMAGEML This method is responsible for assembling the attribute and association data into XML.

writeMAGEML(Writer) - Method in class org.biomage.QuantitationType.Error

writeMAGEML This method is responsible for assembling the attribute and association data into XML.

writeMAGEML(Writer) - Method in class org.biomage.QuantitationType.DerivedSignal

writeMAGEML This method is responsible for assembling the attribute and association data into XML.

writeMAGEML(Writer) - Method in class org.biomage.QuantitationType.ConfidenceIndicator

writeMAGEML This method is responsible for assembling the attribute and association data into XML.

WriteOneTable(Table, FileWriter) - Method in class org.biomage.tools.generate_er.CreateMageER

Description: write one table to the output file

writeOutput(String, int) - Static method in class org.biomage.tools.helpers.StringOutputHelpers

Description: The verboseness level.

writeTableName(CreateFile, Table) - Method in class org.biomage.tools.generate_er.CreateMageER

Description: set the table name and create primary key column and set the primary key into the table