A B C D E F G H I J K L M N O P Q R S T U V W Y Z

E

endDocument() - Method in class org.biomage.tools.xmlutils.MAGEContentHandler

endElement(String, String, String) - Method in class org.biomage.tools.xmlutils.MAGEContentHandler

endPrefixMapping(String) - Method in class org.biomage.tools.xmlutils.MAGEContentHandler

Error - class org.biomage.QuantitationType.Error.

Error measurement of a quantitation.

Error() - Constructor for class org.biomage.QuantitationType.Error

Default constructor.

Error(Attributes) - Constructor for class org.biomage.QuantitationType.Error

Attribute constructor.

ExpectedValue - class org.biomage.QuantitationType.ExpectedValue.

Indication of what value is expected of the associated standard quantitation type.

ExpectedValue() - Constructor for class org.biomage.QuantitationType.ExpectedValue

Default constructor.

ExpectedValue(Attributes) - Constructor for class org.biomage.QuantitationType.ExpectedValue

Attribute constructor.

Experiment - class org.biomage.Experiment.Experiment.

The Experiment is the collection of all the BioAssays that are related by the ExperimentDesign.

experiment_list - Variable in class org.biomage.Experiment.Experiment_package

The Experiment is the collection of all the BioAssays that are related by the ExperimentDesign.

experiment_package - Variable in class org.biomage.Common.MAGEJava

Represents the container for a hierarchical grouping of BioAssays.

Experiment_package - class org.biomage.Experiment.Experiment_package.

Represents the container for a hierarchical grouping of BioAssays.

Experiment_package.Experiment_list - class org.biomage.Experiment.Experiment_package.Experiment_list.

Inner list class for holding multiple entries for attribute experiment.

Experiment_package.Experiment_list() - Constructor for class org.biomage.Experiment.Experiment_package.Experiment_list

Experiment_package() - Constructor for class org.biomage.Experiment.Experiment_package

Default constructor.

Experiment_package(Attributes) - Constructor for class org.biomage.Experiment.Experiment_package

Attribute constructor.

Experiment() - Constructor for class org.biomage.Experiment.Experiment

Default constructor.

Experiment(Attributes) - Constructor for class org.biomage.Experiment.Experiment

Attribute constructor.

EXPERIMENTAL - Variable in class org.biomage.BioSequence.SeqFeature.Basis

experimentalFactor - Variable in class org.biomage.Experiment.FactorValue

The pairing of BioAssay FactorValues with the ExperimentDesign ExperimentFactor.

ExperimentalFactor - class org.biomage.Experiment.ExperimentalFactor.

ExperimentFactors are the dependent variables of an experiment (e.g.

ExperimentalFactor() - Constructor for class org.biomage.Experiment.ExperimentalFactor

Default constructor.

ExperimentalFactor(Attributes) - Constructor for class org.biomage.Experiment.ExperimentalFactor

Attribute constructor.

experimentalFactors - Variable in class org.biomage.Experiment.ExperimentDesign

The description of the factors (TimeCourse, Dosage, etc.) that group the BioAssays.

experimentDesign - Variable in class org.biomage.Experiment.Experiment

The association to the description and annotation of the Experiment, along with the grouping of the top-level BioAssays.

ExperimentDesign - class org.biomage.Experiment.ExperimentDesign.

The ExperimentDesign is the description and collection of ExperimentalFactors and the hierarchy of BioAssays to which they pertain.

ExperimentDesign() - Constructor for class org.biomage.Experiment.ExperimentDesign

Default constructor.

ExperimentDesign(Attributes) - Constructor for class org.biomage.Experiment.ExperimentDesign

Attribute constructor.

Extendable - class org.biomage.Common.Extendable.

Abstract class that specifies for subclasses an association to NameValueTypes.

Extendable() - Constructor for class org.biomage.Common.Extendable

Default constructor.

Extendable(Attributes) - Constructor for class org.biomage.Common.Extendable

Attribute constructor.

externalReference - Variable in class org.biomage.Description.Description

Specifies where the described instance was originally obtained from.

ExternalReference - class org.biomage.Description.ExternalReference.

A reference to the originating source for the object.

ExternalReference() - Constructor for class org.biomage.Description.ExternalReference

Default constructor.

ExternalReference(Attributes) - Constructor for class org.biomage.Description.ExternalReference

Attribute constructor.