A B C D E F G H I J K L M N O P Q R S T U V W Y Z

G

G - Variable in class org.biomage.Measurement.MassUnit.UnitNameCV

G_PER_L - Variable in class org.biomage.Measurement.ConcentrationUnit.UnitNameCV

getAccession() - Method in class org.biomage.Description.DatabaseEntry

Get method for accession

getAccessionVersion() - Method in class org.biomage.Description.DatabaseEntry

Get method for accessionVersion

getAction() - Method in class org.biomage.AuditAndSecurity.Audit

Get method for action

getAction() - Method in class org.biomage.BioMaterial.Treatment

Get method for action

getAction() - Method in interface org.biomage.Interface.HasAction

Get method for action

getActionMeasurement() - Method in class org.biomage.BioMaterial.Treatment

Get method for actionMeasurement

getActionMeasurement() - Method in interface org.biomage.Interface.HasActionMeasurement

Get method for actionMeasurement

getActivityDate() - Method in class org.biomage.Protocol.ProtocolApplication

Get method for activityDate

getAddress() - Method in class org.biomage.AuditAndSecurity.Contact

Get method for address

getAdjustments() - Method in class org.biomage.Array.ArrayManufactureDeviation

Get method for adjustments

getAdjustments() - Method in interface org.biomage.Interface.HasAdjustments

Get method for adjustments

getAffiliation() - Method in class org.biomage.AuditAndSecurity.Person

Get method for affiliation

getAffiliation() - Method in interface org.biomage.Interface.HasAffiliation

Get method for affiliation

getAnalysisResults() - Method in class org.biomage.Experiment.Experiment

Get method for analysisResults

getAnalysisResults() - Method in interface org.biomage.Interface.HasAnalysisResults

Get method for analysisResults

getAnnotations() - Method in class org.biomage.Description.Description

Get method for annotations

getAnnotations() - Method in interface org.biomage.Interface.HasAnnotations

Get method for annotations

getArray_list() - Method in class org.biomage.Array.Array_package

Get method for array_list

getArray_package() - Method in class org.biomage.Common.MAGEJava

Get method for array_package

getArray() - Method in class org.biomage.BioAssay.BioAssayCreation

Get method for array

getArray() - Method in interface org.biomage.Interface.HasArray

Get method for array

getArrayDesign_list() - Method in class org.biomage.ArrayDesign.ArrayDesign_package

Get method for arrayDesign_list

getArrayDesign_package() - Method in class org.biomage.Common.MAGEJava

Get method for arrayDesign_package

getArrayDesign() - Method in class org.biomage.Array.Array

Get method for arrayDesign

getArrayDesign() - Method in interface org.biomage.Interface.HasArrayDesign

Get method for arrayDesign

getArrayGroup_list() - Method in class org.biomage.Array.Array_package

Get method for arrayGroup_list

getArrayGroup() - Method in class org.biomage.Array.Array

Get method for arrayGroup

getArrayGroup() - Method in interface org.biomage.Interface.HasArrayGroup

Get method for arrayGroup

getArrayIdentifier() - Method in class org.biomage.Array.Array

Get method for arrayIdentifier

getArrayManufacture_list() - Method in class org.biomage.Array.Array_package

Get method for arrayManufacture_list

getArrayManufactureDeviations() - Method in class org.biomage.Array.Array

Get method for arrayManufactureDeviations

getArrayManufactureDeviations() - Method in interface org.biomage.Interface.HasArrayManufactureDeviations

Get method for arrayManufactureDeviations

getArrayManufacturers() - Method in class org.biomage.Array.ArrayManufacture

Get method for arrayManufacturers

getArrayManufacturers() - Method in interface org.biomage.Interface.HasArrayManufacturers

Get method for arrayManufacturers

getArrays() - Method in class org.biomage.Array.ArrayManufacture

Get method for arrays

getArrays() - Method in class org.biomage.Array.ArrayGroup

Get method for arrays

getArrays() - Method in interface org.biomage.Interface.HasArrays

Get method for arrays

getArraySpacingX() - Method in class org.biomage.Array.ArrayGroup

Get method for arraySpacingX

getArraySpacingY() - Method in class org.biomage.Array.ArrayGroup

Get method for arraySpacingY

getArrayXOrigin() - Method in class org.biomage.Array.Array

Get method for arrayXOrigin

getArrayYOrigin() - Method in class org.biomage.Array.Array

Get method for arrayYOrigin

getAssoColumnVector() - Method in class org.biomage.tools.generate_er.Table

Description: get the vector for all association columns

getAuditAndSecurity_package() - Method in class org.biomage.Common.MAGEJava

Get method for auditAndSecurity_package

getAuditTrail() - Method in class org.biomage.Common.Describable

Get method for auditTrail

getAuditTrail() - Method in interface org.biomage.Interface.HasAuditTrail

Get method for auditTrail

getAuthors() - Method in class org.biomage.BQS.BibliographicReference

Get method for authors

getBarcode() - Method in class org.biomage.Array.ArrayGroup

Get method for barcode

getBaseClass() - Method in class org.biomage.tools.generate_er.Table

Description: get teh base class name of the table

getBasis() - Method in class org.biomage.BioSequence.SeqFeature

Get method for basis

getBibliographicReferences() - Method in class org.biomage.Description.Description

Get method for bibliographicReferences

getBibliographicReferences() - Method in interface org.biomage.Interface.HasBibliographicReferences

Get method for bibliographicReferences

getBioAssay_list() - Method in class org.biomage.BioAssay.BioAssay_package

Get method for bioAssay_list

getBioAssay_package() - Method in class org.biomage.Common.MAGEJava

Get method for bioAssay_package

getBioAssay() - Method in class org.biomage.BioAssayData.BioAssayDatum

Get method for bioAssay

getBioAssay() - Method in interface org.biomage.Interface.HasBioAssay

Get method for bioAssay

getBioAssayCreation() - Method in class org.biomage.BioAssay.PhysicalBioAssay

Get method for bioAssayCreation

getBioAssayCreation() - Method in interface org.biomage.Interface.HasBioAssayCreation

Get method for bioAssayCreation

getBioAssayData_list() - Method in class org.biomage.BioAssayData.BioAssayData_package

Get method for bioAssayData_list

getBioAssayData_package() - Method in class org.biomage.Common.MAGEJava

Get method for bioAssayData_package

getBioAssayData() - Method in class org.biomage.Experiment.Experiment

Get method for bioAssayData

getBioAssayData() - Method in interface org.biomage.Interface.HasBioAssayData

Get method for bioAssayData

getBioAssayDataCluster_list() - Method in class org.biomage.HigherLevelAnalysis.HigherLevelAnalysis_package

Get method for bioAssayDataCluster_list

getBioAssayDataSources() - Method in class org.biomage.BioAssayData.Transformation

Get method for bioAssayDataSources

getBioAssayDataSources() - Method in interface org.biomage.Interface.HasBioAssayDataSources

Get method for bioAssayDataSources

getBioAssayDimension_list() - Method in class org.biomage.BioAssayData.BioAssayData_package

Get method for bioAssayDimension_list

getBioAssayDimension() - Method in class org.biomage.BioAssayData.BioAssayData

Get method for bioAssayDimension

getBioAssayDimension() - Method in class org.biomage.HigherLevelAnalysis.NodeContents

Get method for bioAssayDimension

getBioAssayDimension() - Method in interface org.biomage.Interface.HasBioAssayDimension

Get method for bioAssayDimension

getBioAssayFactorValues() - Method in class org.biomage.BioAssay.BioAssay

Get method for bioAssayFactorValues

getBioAssayFactorValues() - Method in interface org.biomage.Interface.HasBioAssayFactorValues

Get method for bioAssayFactorValues

getBioAssayMap_list() - Method in class org.biomage.BioAssayData.BioAssayData_package

Get method for bioAssayMap_list

getBioAssayMapping() - Method in class org.biomage.BioAssayData.Transformation

Get method for bioAssayMapping

getBioAssayMapping() - Method in interface org.biomage.Interface.HasBioAssayMapping

Get method for bioAssayMapping

getBioAssayMaps() - Method in class org.biomage.BioAssayData.BioAssayMapping

Get method for bioAssayMaps

getBioAssayMaps() - Method in interface org.biomage.Interface.HasBioAssayMaps

Get method for bioAssayMaps

getBioAssayMapTarget() - Method in class org.biomage.BioAssayData.BioAssayMap

Get method for bioAssayMapTarget

getBioAssayMapTarget() - Method in interface org.biomage.Interface.HasBioAssayMapTarget

Get method for bioAssayMapTarget

getBioAssays() - Method in class org.biomage.BioAssayData.BioAssayDimension

Get method for bioAssays

getBioAssays() - Method in class org.biomage.Experiment.Experiment

Get method for bioAssays

getBioAssays() - Method in interface org.biomage.Interface.HasBioAssays

Get method for bioAssays

getBioAssayTreatments() - Method in class org.biomage.BioAssay.PhysicalBioAssay

Get method for bioAssayTreatments

getBioAssayTreatments() - Method in interface org.biomage.Interface.HasBioAssayTreatments

Get method for bioAssayTreatments

getBioAssayTupleData() - Method in class org.biomage.BioAssayData.BioDataTuples

Get method for bioAssayTupleData

getBioAssayTupleData() - Method in interface org.biomage.Interface.HasBioAssayTupleData

Get method for bioAssayTupleData

getBioDataValues() - Method in class org.biomage.BioAssayData.BioAssayData

Get method for bioDataValues

getBioDataValues() - Method in interface org.biomage.Interface.HasBioDataValues

Get method for bioDataValues

getBioEvent_package() - Method in class org.biomage.Common.MAGEJava

Get method for bioEvent_package

getBiologicalCharacteristics() - Method in class org.biomage.DesignElement.CompositeSequence

Get method for biologicalCharacteristics

getBiologicalCharacteristics() - Method in interface org.biomage.Interface.HasBiologicalCharacteristics

Get method for biologicalCharacteristics

getBioMaterial_list() - Method in class org.biomage.BioMaterial.BioMaterial_package

Get method for bioMaterial_list

getBioMaterial_package() - Method in class org.biomage.Common.MAGEJava

Get method for bioMaterial_package

getBioMaterial() - Method in class org.biomage.Array.ManufactureLIMS

Get method for bioMaterial

getBioMaterial() - Method in class org.biomage.BioMaterial.BioMaterialMeasurement

Get method for bioMaterial

getBioMaterial() - Method in interface org.biomage.Interface.HasBioMaterial

Get method for bioMaterial

getBioMaterialPlateCol() - Method in class org.biomage.Array.ManufactureLIMSBiomaterial

Get method for bioMaterialPlateCol

getBioMaterialPlateIdentifier() - Method in class org.biomage.Array.ManufactureLIMSBiomaterial

Get method for bioMaterialPlateIdentifier

getBioMaterialPlateRow() - Method in class org.biomage.Array.ManufactureLIMSBiomaterial

Get method for bioMaterialPlateRow

getBioSequence_list() - Method in class org.biomage.BioSequence.BioSequence_package

Get method for bioSequence_list

getBioSequence_package() - Method in class org.biomage.Common.MAGEJava

Get method for bioSequence_package

getBQS_package() - Method in class org.biomage.Common.MAGEJava

Get method for bQS_package

getCanBeNull() - Method in class org.biomage.tools.generate_er.DataColumn

Description: get if this column can have null as a value

getCascade() - Method in class org.biomage.tools.generate_er.ForeignKey

Description: get if the foreign table owns this table

getCategory() - Method in class org.biomage.Description.OntologyEntry

Get method for category

getCategory() - Method in class org.biomage.Experiment.ExperimentalFactor

Get method for category

getCategory() - Method in interface org.biomage.Interface.HasCategory

Get method for category

getChannel_list() - Method in class org.biomage.BioAssay.BioAssay_package

Get method for channel_list

getChannel() - Method in interface org.biomage.Interface.HasChannel

Get method for channel

getChannel() - Method in class org.biomage.QuantitationType.QuantitationType

Get method for channel

getChannels() - Method in class org.biomage.BioAssay.Image

Get method for channels

getChannels() - Method in class org.biomage.BioAssay.BioAssay

Get method for channels

getChannels() - Method in interface org.biomage.Interface.HasChannels

Get method for channels

getCharacteristics() - Method in class org.biomage.BioMaterial.BioMaterial

Get method for characteristics

getCharacteristics() - Method in interface org.biomage.Interface.HasCharacteristics

Get method for characteristics

getClassWithModelName(String) - Method in class org.biomage.Common.MAGEJava

getClassWithModelName(String modelName) This method returns a MAGE class given it's common Model name.

getClusterBioAssayData() - Method in class org.biomage.HigherLevelAnalysis.BioAssayDataCluster

Get method for clusterBioAssayData

getClusterBioAssayData() - Method in interface org.biomage.Interface.HasClusterBioAssayData

Get method for clusterBioAssayData

getColumn() - Method in class org.biomage.ArrayDesign.Zone

Get method for column

getColumn() - Method in class org.biomage.DesignElement.FeatureLocation

Get method for column

getColumnId() - Method in class org.biomage.tools.generate_er.Index

Description: get the column id of the column that is indexed

getColumnId() - Method in class org.biomage.tools.generate_er.ForeignKey

Description: get the column id of the foreign key

getColumnID() - Method in class org.biomage.tools.generate_er.PrimaryKey

Description: get id of the primery key column

getComment() - Method in class org.biomage.tools.generate_er.DataColumn

Description: get the comment of the column

getComment() - Method in class org.biomage.tools.generate_er.Table

Description: get teh comment of the table

getComponentCompounds() - Method in class org.biomage.BioMaterial.Compound

Get method for componentCompounds

getComponentCompounds() - Method in interface org.biomage.Interface.HasComponentCompounds

Get method for componentCompounds

getComposite() - Method in class org.biomage.DesignElement.CompositePosition

Get method for composite

getComposite() - Method in interface org.biomage.Interface.HasComposite

Get method for composite

getCompositeCompositeMap_list() - Method in class org.biomage.DesignElement.DesignElement_package

Get method for compositeCompositeMap_list

getCompositeCompositeMaps() - Method in class org.biomage.DesignElement.CompositeSequence

Get method for compositeCompositeMaps

getCompositeCompositeMaps() - Method in interface org.biomage.Interface.HasCompositeCompositeMaps

Get method for compositeCompositeMaps

getCompositeGroup_list() - Method in class org.biomage.ArrayDesign.ArrayDesign_package

Get method for compositeGroup_list

getCompositeGroups() - Method in class org.biomage.ArrayDesign.ArrayDesign

Get method for compositeGroups

getCompositeGroups() - Method in interface org.biomage.Interface.HasCompositeGroups

Get method for compositeGroups

getCompositePositionSources() - Method in class org.biomage.DesignElement.CompositeCompositeMap

Get method for compositePositionSources

getCompositePositionSources() - Method in interface org.biomage.Interface.HasCompositePositionSources

Get method for compositePositionSources

getCompositeSequence_list() - Method in class org.biomage.DesignElement.DesignElement_package

Get method for compositeSequence_list

getCompositeSequence() - Method in class org.biomage.DesignElement.ReporterCompositeMap

Get method for compositeSequence

getCompositeSequence() - Method in class org.biomage.DesignElement.CompositeCompositeMap

Get method for compositeSequence

getCompositeSequence() - Method in interface org.biomage.Interface.HasCompositeSequence

Get method for compositeSequence

getCompositeSequences() - Method in class org.biomage.ArrayDesign.CompositeGroup

Get method for compositeSequences

getCompositeSequences() - Method in class org.biomage.BioAssayData.CompositeSequenceDimension

Get method for compositeSequences

getCompositeSequences() - Method in interface org.biomage.Interface.HasCompositeSequences

Get method for compositeSequences

getCompound_list() - Method in class org.biomage.BioMaterial.BioMaterial_package

Get method for compound_list

getCompound() - Method in class org.biomage.BioMaterial.CompoundMeasurement

Get method for compound

getCompound() - Method in interface org.biomage.Interface.HasCompound

Get method for compound

getCompoundMeasurements() - Method in class org.biomage.BioMaterial.Treatment

Get method for compoundMeasurements

getCompoundMeasurements() - Method in interface org.biomage.Interface.HasCompoundMeasurements

Get method for compoundMeasurements

getConfidenceIndicators() - Method in interface org.biomage.Interface.HasConfidenceIndicators

Get method for confidenceIndicators

getConfidenceIndicators() - Method in class org.biomage.QuantitationType.QuantitationType

Get method for confidenceIndicators

getContact_list() - Method in class org.biomage.AuditAndSecurity.AuditAndSecurity_package

Get method for contact_list

getContacts() - Method in class org.biomage.Description.Database

Get method for contacts

getContacts() - Method in interface org.biomage.Interface.HasContacts

Get method for contacts

getContainedFeatures() - Method in class org.biomage.BioAssayData.FeatureDimension

Get method for containedFeatures

getContainedFeatures() - Method in interface org.biomage.Interface.HasContainedFeatures

Get method for containedFeatures

getControlFeatures() - Method in class org.biomage.DesignElement.Feature

Get method for controlFeatures

getControlFeatures() - Method in interface org.biomage.Interface.HasControlFeatures

Get method for controlFeatures

getControlledFeatures() - Method in class org.biomage.DesignElement.Feature

Get method for controlledFeatures

getControlledFeatures() - Method in interface org.biomage.Interface.HasControlledFeatures

Get method for controlledFeatures

getControlType() - Method in class org.biomage.DesignElement.DesignElement

Get method for controlType

getControlType() - Method in interface org.biomage.Interface.HasControlType

Get method for controlType

getCoordinate() - Method in class org.biomage.BioSequence.SeqFeatureLocation

Get method for coordinate

getCoordinate() - Method in interface org.biomage.Interface.HasCoordinate

Get method for coordinate

getCube() - Method in class org.biomage.BioAssayData.BioDataCube

Get method for cube

getDatabase_list() - Method in class org.biomage.Description.Description_package

Get method for database_list

getDatabase() - Method in class org.biomage.Description.DatabaseEntry

Get method for database

getDatabase() - Method in interface org.biomage.Interface.HasDatabase

Get method for database

getDatabaseReferences() - Method in class org.biomage.Description.Description

Get method for databaseReferences

getDatabaseReferences() - Method in interface org.biomage.Interface.HasDatabaseReferences

Get method for databaseReferences

getDataColumn() - Method in class org.biomage.tools.generate_er.PrimaryKey

Description: get primary key column

getDataColumnVector() - Method in class org.biomage.tools.generate_er.Table

Description: get the vector for all simple data columns

getDataType() - Method in class org.biomage.HigherLevelAnalysis.NodeValue

Get method for dataType

getDataType() - Method in interface org.biomage.Interface.HasDataType

Get method for dataType

getDataType() - Method in class org.biomage.Protocol.Parameter

Get method for dataType

getDataType() - Method in class org.biomage.QuantitationType.QuantitationType

Get method for dataType

getDatatype(CreateFile.AttrInformation) - Method in class org.biomage.tools.generate_er.CreateMageER

Description: Pass through get method for datatype.

getDate() - Method in class org.biomage.AuditAndSecurity.Audit

Get method for date

getDefectType() - Method in class org.biomage.Array.ZoneDefect

Get method for defectType

getDefectType() - Method in class org.biomage.Array.FeatureDefect

Get method for defectType

getDefectType() - Method in interface org.biomage.Interface.HasDefectType

Get method for defectType

getDeltaX() - Method in class org.biomage.Array.PositionDelta

Get method for deltaX

getDeltaY() - Method in class org.biomage.Array.PositionDelta

Get method for deltaY

getDerivedBioAssayData() - Method in class org.biomage.BioAssay.DerivedBioAssay

Get method for derivedBioAssayData

getDerivedBioAssayData() - Method in interface org.biomage.Interface.HasDerivedBioAssayData

Get method for derivedBioAssayData

getDerivedBioAssayDataTarget() - Method in class org.biomage.BioAssayData.Transformation

Get method for derivedBioAssayDataTarget

getDerivedBioAssayDataTarget() - Method in interface org.biomage.Interface.HasDerivedBioAssayDataTarget

Get method for derivedBioAssayDataTarget

getDescription_package() - Method in class org.biomage.Common.MAGEJava

Get method for description_package

getDescription() - Method in class org.biomage.Description.OntologyEntry

Get method for description

getDescriptions() - Method in class org.biomage.Common.Describable

Get method for descriptions

getDescriptions() - Method in interface org.biomage.Interface.HasDescriptions

Get method for descriptions

getDesignElement_package() - Method in class org.biomage.Common.MAGEJava

Get method for designElement_package

getDesignElement() - Method in class org.biomage.BioAssayData.BioAssayDatum

Get method for designElement

getDesignElement() - Method in interface org.biomage.Interface.HasDesignElement

Get method for designElement

getDesignElementDimension_list() - Method in class org.biomage.BioAssayData.BioAssayData_package

Get method for designElementDimension_list

getDesignElementDimension() - Method in class org.biomage.BioAssayData.BioAssayData

Get method for designElementDimension

getDesignElementDimension() - Method in class org.biomage.HigherLevelAnalysis.NodeContents

Get method for designElementDimension

getDesignElementDimension() - Method in interface org.biomage.Interface.HasDesignElementDimension

Get method for designElementDimension

getDesignElementMapping() - Method in class org.biomage.BioAssayData.Transformation

Get method for designElementMapping

getDesignElementMapping() - Method in interface org.biomage.Interface.HasDesignElementMapping

Get method for designElementMapping

getDesignElementMaps() - Method in class org.biomage.BioAssayData.DesignElementMapping

Get method for designElementMaps

getDesignElementMaps() - Method in interface org.biomage.Interface.HasDesignElementMaps

Get method for designElementMaps

getDesignProviders() - Method in class org.biomage.ArrayDesign.ArrayDesign

Get method for designProviders

getDesignProviders() - Method in interface org.biomage.Interface.HasDesignProviders

Get method for designProviders

getDistanceUnit() - Method in class org.biomage.Array.PositionDelta

Get method for distanceUnit

getDistanceUnit() - Method in class org.biomage.Array.Fiducial

Get method for distanceUnit

getDistanceUnit() - Method in class org.biomage.Array.ArrayGroup

Get method for distanceUnit

getDistanceUnit() - Method in class org.biomage.ArrayDesign.ZoneLayout

Get method for distanceUnit

getDistanceUnit() - Method in class org.biomage.ArrayDesign.ZoneGroup

Get method for distanceUnit

getDistanceUnit() - Method in class org.biomage.ArrayDesign.Zone

Get method for distanceUnit

getDistanceUnit() - Method in class org.biomage.ArrayDesign.FeatureGroup

Get method for distanceUnit

getDistanceUnit() - Method in class org.biomage.DesignElement.Position

Get method for distanceUnit

getDistanceUnit() - Method in interface org.biomage.Interface.HasDistanceUnit

Get method for distanceUnit

getEditor() - Method in class org.biomage.BQS.BibliographicReference

Get method for editor

getEmail() - Method in class org.biomage.AuditAndSecurity.Contact

Get method for email

getEnd() - Method in class org.biomage.BioSequence.SequencePosition

Get method for end

getEnumVector() - Method in class org.biomage.tools.generate_er.DataColumn

Description: get all enumeration values

getExperiment_list() - Method in class org.biomage.Experiment.Experiment_package

Get method for experiment_list

getExperiment_package() - Method in class org.biomage.Common.MAGEJava

Get method for experiment_package

getExperimentalFactor() - Method in class org.biomage.Experiment.FactorValue

Get method for experimentalFactor

getExperimentalFactor() - Method in interface org.biomage.Interface.HasExperimentalFactor

Get method for experimentalFactor

getExperimentalFactors() - Method in class org.biomage.Experiment.ExperimentDesign

Get method for experimentalFactors

getExperimentalFactors() - Method in interface org.biomage.Interface.HasExperimentalFactors

Get method for experimentalFactors

getExperimentDesign() - Method in class org.biomage.Experiment.Experiment

Get method for experimentDesign

getExperimentDesign() - Method in interface org.biomage.Interface.HasExperimentDesign

Get method for experimentDesign

getExportedFromDB() - Method in class org.biomage.Description.ExternalReference

Get method for exportedFromDB

getExportedFromServer() - Method in class org.biomage.Description.ExternalReference

Get method for exportedFromServer

getExportID() - Method in class org.biomage.Description.ExternalReference

Get method for exportID

getExportName() - Method in class org.biomage.Description.ExternalReference

Get method for exportName

getExternalReference() - Method in class org.biomage.Description.Description

Get method for externalReference

getExternalReference() - Method in interface org.biomage.Interface.HasExternalReference

Get method for externalReference

getFactorValues() - Method in class org.biomage.Experiment.ExperimentalFactor

Get method for factorValues

getFactorValues() - Method in interface org.biomage.Interface.HasFactorValues

Get method for factorValues

getFailTypes() - Method in class org.biomage.DesignElement.Reporter

Get method for failTypes

getFailTypes() - Method in interface org.biomage.Interface.HasFailTypes

Get method for failTypes

getFax() - Method in class org.biomage.AuditAndSecurity.Contact

Get method for fax

getFeature() - Method in class org.biomage.Array.ManufactureLIMS

Get method for feature

getFeature() - Method in class org.biomage.Array.FeatureDefect

Get method for feature

getFeature() - Method in class org.biomage.DesignElement.FeatureInformation

Get method for feature

getFeature() - Method in interface org.biomage.Interface.HasFeature

Get method for feature

getFeatureDefects() - Method in class org.biomage.Array.ArrayManufactureDeviation

Get method for featureDefects

getFeatureDefects() - Method in interface org.biomage.Interface.HasFeatureDefects

Get method for featureDefects

getFeatureExtraction() - Method in class org.biomage.BioAssay.MeasuredBioAssay

Get method for featureExtraction

getFeatureExtraction() - Method in interface org.biomage.Interface.HasFeatureExtraction

Get method for featureExtraction

getFeatureGroup() - Method in class org.biomage.DesignElement.Feature

Get method for featureGroup

getFeatureGroup() - Method in interface org.biomage.Interface.HasFeatureGroup

Get method for featureGroup

getFeatureGroups() - Method in class org.biomage.ArrayDesign.ArrayDesign

Get method for featureGroups

getFeatureGroups() - Method in interface org.biomage.Interface.HasFeatureGroups

Get method for featureGroups

getFeatureHeight() - Method in class org.biomage.ArrayDesign.FeatureGroup

Get method for featureHeight

getFeatureInformationSources() - Method in class org.biomage.DesignElement.FeatureReporterMap

Get method for featureInformationSources

getFeatureInformationSources() - Method in interface org.biomage.Interface.HasFeatureInformationSources

Get method for featureInformationSources

getFeatureLength() - Method in class org.biomage.ArrayDesign.FeatureGroup

Get method for featureLength

getFeatureLIMSs() - Method in class org.biomage.Array.ArrayManufacture

Get method for featureLIMSs

getFeatureLIMSs() - Method in interface org.biomage.Interface.HasFeatureLIMSs

Get method for featureLIMSs

getFeatureLocation() - Method in class org.biomage.DesignElement.Feature

Get method for featureLocation

getFeatureLocation() - Method in interface org.biomage.Interface.HasFeatureLocation

Get method for featureLocation

getFeatureReporterMap_list() - Method in class org.biomage.DesignElement.DesignElement_package

Get method for featureReporterMap_list

getFeatureReporterMaps() - Method in class org.biomage.DesignElement.Reporter

Get method for featureReporterMaps

getFeatureReporterMaps() - Method in interface org.biomage.Interface.HasFeatureReporterMaps

Get method for featureReporterMaps

getFeatures() - Method in class org.biomage.ArrayDesign.FeatureGroup

Get method for features

getFeatures() - Method in interface org.biomage.Interface.HasFeatures

Get method for features

getFeatureShape() - Method in class org.biomage.ArrayDesign.FeatureGroup

Get method for featureShape

getFeatureShape() - Method in interface org.biomage.Interface.HasFeatureShape

Get method for featureShape

getFeatureWidth() - Method in class org.biomage.ArrayDesign.FeatureGroup

Get method for featureWidth

getFiducials() - Method in class org.biomage.Array.ArrayGroup

Get method for fiducials

getFiducials() - Method in interface org.biomage.Interface.HasFiducials

Get method for fiducials

getFiducialType() - Method in class org.biomage.Array.Fiducial

Get method for fiducialType

getFiducialType() - Method in interface org.biomage.Interface.HasFiducialType

Get method for fiducialType

getFirstName() - Method in class org.biomage.AuditAndSecurity.Person

Get method for firstName

getForeignKey() - Method in class org.biomage.tools.generate_er.AssociationColumn

Description: return the foreign key object of this table

getForeignKeyType() - Method in class org.biomage.tools.generate_er.ForeignKey

Description: get the type of the foreign key

getForeignTable() - Method in class org.biomage.tools.generate_er.ForeignKey

Description: get the name of the foreign table

getForeignTablePrimaryKey() - Method in class org.biomage.tools.generate_er.ForeignKey

Description: get the name of the foreign table primary key

getFormat() - Method in class org.biomage.BioAssay.Image

Get method for format

getFormat() - Method in interface org.biomage.Interface.HasFormat

Get method for format

getFromAdjustments(int) - Method in class org.biomage.Array.ArrayManufactureDeviation

Method to get ZoneDefect from Adjustments_list

getFromAdjustments(int) - Method in interface org.biomage.Interface.HasAdjustments

Method to get ZoneDefect from Adjustments_list

getFromAnalysisResults(int) - Method in class org.biomage.Experiment.Experiment

Method to get BioAssayDataCluster from AnalysisResults_list

getFromAnalysisResults(int) - Method in interface org.biomage.Interface.HasAnalysisResults

Method to get BioAssayDataCluster from AnalysisResults_list

getFromAnnotations(int) - Method in class org.biomage.Description.Description

Method to get OntologyEntry from Annotations_list

getFromAnnotations(int) - Method in interface org.biomage.Interface.HasAnnotations

Method to get OntologyEntry from Annotations_list

getFromArray_list(int) - Method in class org.biomage.Array.Array_package

Method to get Array from Array_list

getFromArrayDesign_list(int) - Method in class org.biomage.ArrayDesign.ArrayDesign_package

Method to get ArrayDesign from ArrayDesign_list

getFromArrayGroup_list(int) - Method in class org.biomage.Array.Array_package

Method to get ArrayGroup from ArrayGroup_list

getFromArrayManufacture_list(int) - Method in class org.biomage.Array.Array_package

Method to get ArrayManufacture from ArrayManufacture_list

getFromArrayManufactureDeviations(int) - Method in class org.biomage.Array.Array

Method to get ArrayManufactureDeviation from ArrayManufactureDeviations_list

getFromArrayManufactureDeviations(int) - Method in interface org.biomage.Interface.HasArrayManufactureDeviations

Method to get ArrayManufactureDeviation from ArrayManufactureDeviations_list

getFromArrayManufacturers(int) - Method in class org.biomage.Array.ArrayManufacture

Method to get Contact from ArrayManufacturers_list

getFromArrayManufacturers(int) - Method in interface org.biomage.Interface.HasArrayManufacturers

Method to get Contact from ArrayManufacturers_list

getFromArrays(int) - Method in class org.biomage.Array.ArrayManufacture

Method to get Array from Arrays_list

getFromArrays(int) - Method in class org.biomage.Array.ArrayGroup

Method to get Array from Arrays_list

getFromArrays(int) - Method in interface org.biomage.Interface.HasArrays

Method to get Array from Arrays_list

getFromAuditTrail(int) - Method in class org.biomage.Common.Describable

Method to get Audit from AuditTrail_list

getFromAuditTrail(int) - Method in interface org.biomage.Interface.HasAuditTrail

Method to get Audit from AuditTrail_list

getFromBibliographicReferences(int) - Method in class org.biomage.Description.Description

Method to get BibliographicReference from BibliographicReferences_list

getFromBibliographicReferences(int) - Method in interface org.biomage.Interface.HasBibliographicReferences

Method to get BibliographicReference from BibliographicReferences_list

getFromBioAssay_list(int) - Method in class org.biomage.BioAssay.BioAssay_package

Method to get BioAssay from BioAssay_list

getFromBioAssayData_list(int) - Method in class org.biomage.BioAssayData.BioAssayData_package

Method to get BioAssayData from BioAssayData_list

getFromBioAssayData(int) - Method in class org.biomage.Experiment.Experiment

Method to get BioAssayData from BioAssayData_list

getFromBioAssayData(int) - Method in interface org.biomage.Interface.HasBioAssayData

Method to get BioAssayData from BioAssayData_list

getFromBioAssayDataCluster_list(int) - Method in class org.biomage.HigherLevelAnalysis.HigherLevelAnalysis_package

Method to get BioAssayDataCluster from BioAssayDataCluster_list

getFromBioAssayDataSources(int) - Method in class org.biomage.BioAssayData.Transformation

Method to get BioAssayData from BioAssayDataSources_list

getFromBioAssayDataSources(int) - Method in interface org.biomage.Interface.HasBioAssayDataSources

Method to get BioAssayData from BioAssayDataSources_list

getFromBioAssayDimension_list(int) - Method in class org.biomage.BioAssayData.BioAssayData_package

Method to get BioAssayDimension from BioAssayDimension_list

getFromBioAssayFactorValues(int) - Method in class org.biomage.BioAssay.BioAssay

Method to get FactorValue from BioAssayFactorValues_list

getFromBioAssayFactorValues(int) - Method in interface org.biomage.Interface.HasBioAssayFactorValues

Method to get FactorValue from BioAssayFactorValues_list

getFromBioAssayMap_list(int) - Method in class org.biomage.BioAssayData.BioAssayData_package

Method to get BioAssayMap from BioAssayMap_list

getFromBioAssayMaps(int) - Method in class org.biomage.BioAssayData.BioAssayMapping

Method to get BioAssayMap from BioAssayMaps_list

getFromBioAssayMaps(int) - Method in interface org.biomage.Interface.HasBioAssayMaps

Method to get BioAssayMap from BioAssayMaps_list

getFromBioAssays(int) - Method in class org.biomage.BioAssayData.BioAssayDimension

Method to get BioAssay from BioAssays_list

getFromBioAssays(int) - Method in class org.biomage.Experiment.Experiment

Method to get BioAssay from BioAssays_list

getFromBioAssays(int) - Method in interface org.biomage.Interface.HasBioAssays

Method to get BioAssay from BioAssays_list

getFromBioAssayTreatments(int) - Method in class org.biomage.BioAssay.PhysicalBioAssay

Method to get BioAssayTreatment from BioAssayTreatments_list

getFromBioAssayTreatments(int) - Method in interface org.biomage.Interface.HasBioAssayTreatments

Method to get BioAssayTreatment from BioAssayTreatments_list

getFromBioAssayTupleData(int) - Method in class org.biomage.BioAssayData.BioDataTuples

Method to get BioAssayDatum from BioAssayTupleData_list

getFromBioAssayTupleData(int) - Method in interface org.biomage.Interface.HasBioAssayTupleData

Method to get BioAssayDatum from BioAssayTupleData_list

getFromBiologicalCharacteristics(int) - Method in class org.biomage.DesignElement.CompositeSequence

Method to get BioSequence from BiologicalCharacteristics_list

getFromBiologicalCharacteristics(int) - Method in interface org.biomage.Interface.HasBiologicalCharacteristics

Method to get BioSequence from BiologicalCharacteristics_list

getFromBioMaterial_list(int) - Method in class org.biomage.BioMaterial.BioMaterial_package

Method to get BioMaterial from BioMaterial_list

getFromBioSequence_list(int) - Method in class org.biomage.BioSequence.BioSequence_package

Method to get BioSequence from BioSequence_list

getFromChannel_list(int) - Method in class org.biomage.BioAssay.BioAssay_package

Method to get Channel from Channel_list

getFromChannels(int) - Method in class org.biomage.BioAssay.Image

Method to get Channel from Channels_list

getFromChannels(int) - Method in class org.biomage.BioAssay.BioAssay

Method to get Channel from Channels_list

getFromChannels(int) - Method in interface org.biomage.Interface.HasChannels

Method to get Channel from Channels_list

getFromCharacteristics(int) - Method in class org.biomage.BioMaterial.BioMaterial

Method to get OntologyEntry from Characteristics_list

getFromCharacteristics(int) - Method in interface org.biomage.Interface.HasCharacteristics

Method to get OntologyEntry from Characteristics_list

getFromComponentCompounds(int) - Method in class org.biomage.BioMaterial.Compound

Method to get CompoundMeasurement from ComponentCompounds_list

getFromComponentCompounds(int) - Method in interface org.biomage.Interface.HasComponentCompounds

Method to get CompoundMeasurement from ComponentCompounds_list

getFromCompositeCompositeMap_list(int) - Method in class org.biomage.DesignElement.DesignElement_package

Method to get CompositeCompositeMap from CompositeCompositeMap_list

getFromCompositeCompositeMaps(int) - Method in class org.biomage.DesignElement.CompositeSequence

Method to get CompositeCompositeMap from CompositeCompositeMaps_list

getFromCompositeCompositeMaps(int) - Method in interface org.biomage.Interface.HasCompositeCompositeMaps

Method to get CompositeCompositeMap from CompositeCompositeMaps_list

getFromCompositeGroup_list(int) - Method in class org.biomage.ArrayDesign.ArrayDesign_package

Method to get CompositeGroup from CompositeGroup_list

getFromCompositeGroups(int) - Method in class org.biomage.ArrayDesign.ArrayDesign

Method to get CompositeGroup from CompositeGroups_list

getFromCompositeGroups(int) - Method in interface org.biomage.Interface.HasCompositeGroups

Method to get CompositeGroup from CompositeGroups_list

getFromCompositePositionSources(int) - Method in class org.biomage.DesignElement.CompositeCompositeMap

Method to get CompositePosition from CompositePositionSources_list

getFromCompositePositionSources(int) - Method in interface org.biomage.Interface.HasCompositePositionSources

Method to get CompositePosition from CompositePositionSources_list

getFromCompositeSequence_list(int) - Method in class org.biomage.DesignElement.DesignElement_package

Method to get CompositeSequence from CompositeSequence_list

getFromCompositeSequences(int) - Method in class org.biomage.ArrayDesign.CompositeGroup

Method to get CompositeSequence from CompositeSequences_list

getFromCompositeSequences(int) - Method in class org.biomage.BioAssayData.CompositeSequenceDimension

Method to get CompositeSequence from CompositeSequences_list

getFromCompositeSequences(int) - Method in interface org.biomage.Interface.HasCompositeSequences

Method to get CompositeSequence from CompositeSequences_list

getFromCompound_list(int) - Method in class org.biomage.BioMaterial.BioMaterial_package

Method to get Compound from Compound_list

getFromCompoundMeasurements(int) - Method in class org.biomage.BioMaterial.Treatment

Method to get CompoundMeasurement from CompoundMeasurements_list

getFromCompoundMeasurements(int) - Method in interface org.biomage.Interface.HasCompoundMeasurements

Method to get CompoundMeasurement from CompoundMeasurements_list

getFromConfidenceIndicators(int) - Method in interface org.biomage.Interface.HasConfidenceIndicators

Method to get ConfidenceIndicator from ConfidenceIndicators_list

getFromConfidenceIndicators(int) - Method in class org.biomage.QuantitationType.QuantitationType

Method to get ConfidenceIndicator from ConfidenceIndicators_list

getFromContact_list(int) - Method in class org.biomage.AuditAndSecurity.AuditAndSecurity_package

Method to get Contact from Contact_list

getFromContacts(int) - Method in class org.biomage.Description.Database

Method to get Contact from Contacts_list

getFromContacts(int) - Method in interface org.biomage.Interface.HasContacts

Method to get Contact from Contacts_list

getFromContainedFeatures(int) - Method in class org.biomage.BioAssayData.FeatureDimension

Method to get Feature from ContainedFeatures_list

getFromContainedFeatures(int) - Method in interface org.biomage.Interface.HasContainedFeatures

Method to get Feature from ContainedFeatures_list

getFromControlFeatures(int) - Method in class org.biomage.DesignElement.Feature

Method to get Feature from ControlFeatures_list

getFromControlFeatures(int) - Method in interface org.biomage.Interface.HasControlFeatures

Method to get Feature from ControlFeatures_list

getFromControlledFeatures(int) - Method in class org.biomage.DesignElement.Feature

Method to get Feature from ControlledFeatures_list

getFromControlledFeatures(int) - Method in interface org.biomage.Interface.HasControlledFeatures

Method to get Feature from ControlledFeatures_list

getFromDatabase_list(int) - Method in class org.biomage.Description.Description_package

Method to get Database from Database_list

getFromDatabaseReferences(int) - Method in class org.biomage.Description.Description

Method to get DatabaseEntry from DatabaseReferences_list

getFromDatabaseReferences(int) - Method in interface org.biomage.Interface.HasDatabaseReferences

Method to get DatabaseEntry from DatabaseReferences_list

getFromDerivedBioAssayData(int) - Method in class org.biomage.BioAssay.DerivedBioAssay

Method to get DerivedBioAssayData from DerivedBioAssayData_list

getFromDerivedBioAssayData(int) - Method in interface org.biomage.Interface.HasDerivedBioAssayData

Method to get DerivedBioAssayData from DerivedBioAssayData_list

getFromDescriptions(int) - Method in class org.biomage.Common.Describable

Method to get Description from Descriptions_list

getFromDescriptions(int) - Method in interface org.biomage.Interface.HasDescriptions

Method to get Description from Descriptions_list

getFromDesignElementDimension_list(int) - Method in class org.biomage.BioAssayData.BioAssayData_package

Method to get DesignElementDimension from DesignElementDimension_list

getFromDesignElementMaps(int) - Method in class org.biomage.BioAssayData.DesignElementMapping

Method to get DesignElementMap from DesignElementMaps_list

getFromDesignElementMaps(int) - Method in interface org.biomage.Interface.HasDesignElementMaps

Method to get DesignElementMap from DesignElementMaps_list

getFromDesignProviders(int) - Method in class org.biomage.ArrayDesign.ArrayDesign

Method to get Contact from DesignProviders_list

getFromDesignProviders(int) - Method in interface org.biomage.Interface.HasDesignProviders

Method to get Contact from DesignProviders_list

getFromExperiment_list(int) - Method in class org.biomage.Experiment.Experiment_package

Method to get Experiment from Experiment_list

getFromExperimentalFactors(int) - Method in class org.biomage.Experiment.ExperimentDesign

Method to get ExperimentalFactor from ExperimentalFactors_list

getFromExperimentalFactors(int) - Method in interface org.biomage.Interface.HasExperimentalFactors

Method to get ExperimentalFactor from ExperimentalFactors_list

getFromFactorValues(int) - Method in class org.biomage.Experiment.ExperimentalFactor

Method to get FactorValue from FactorValues_list

getFromFactorValues(int) - Method in interface org.biomage.Interface.HasFactorValues

Method to get FactorValue from FactorValues_list

getFromFailTypes(int) - Method in class org.biomage.DesignElement.Reporter

Method to get OntologyEntry from FailTypes_list

getFromFailTypes(int) - Method in interface org.biomage.Interface.HasFailTypes

Method to get OntologyEntry from FailTypes_list

getFromFeatureDefects(int) - Method in class org.biomage.Array.ArrayManufactureDeviation

Method to get FeatureDefect from FeatureDefects_list

getFromFeatureDefects(int) - Method in interface org.biomage.Interface.HasFeatureDefects

Method to get FeatureDefect from FeatureDefects_list

getFromFeatureGroups(int) - Method in class org.biomage.ArrayDesign.ArrayDesign

Method to get FeatureGroup from FeatureGroups_list

getFromFeatureGroups(int) - Method in interface org.biomage.Interface.HasFeatureGroups

Method to get FeatureGroup from FeatureGroups_list

getFromFeatureInformationSources(int) - Method in class org.biomage.DesignElement.FeatureReporterMap

Method to get FeatureInformation from FeatureInformationSources_list

getFromFeatureInformationSources(int) - Method in interface org.biomage.Interface.HasFeatureInformationSources

Method to get FeatureInformation from FeatureInformationSources_list

getFromFeatureLIMSs(int) - Method in class org.biomage.Array.ArrayManufacture

Method to get ManufactureLIMS from FeatureLIMSs_list

getFromFeatureLIMSs(int) - Method in interface org.biomage.Interface.HasFeatureLIMSs

Method to get ManufactureLIMS from FeatureLIMSs_list

getFromFeatureReporterMap_list(int) - Method in class org.biomage.DesignElement.DesignElement_package

Method to get FeatureReporterMap from FeatureReporterMap_list

getFromFeatureReporterMaps(int) - Method in class org.biomage.DesignElement.Reporter

Method to get FeatureReporterMap from FeatureReporterMaps_list

getFromFeatureReporterMaps(int) - Method in interface org.biomage.Interface.HasFeatureReporterMaps

Method to get FeatureReporterMap from FeatureReporterMaps_list

getFromFeatures(int) - Method in class org.biomage.ArrayDesign.FeatureGroup

Method to get Feature from Features_list

getFromFeatures(int) - Method in interface org.biomage.Interface.HasFeatures

Method to get Feature from Features_list

getFromFiducials(int) - Method in class org.biomage.Array.ArrayGroup

Method to get Fiducial from Fiducials_list

getFromFiducials(int) - Method in interface org.biomage.Interface.HasFiducials

Method to get Fiducial from Fiducials_list

getFromHardware_list(int) - Method in class org.biomage.Protocol.Protocol_package

Method to get Hardware from Hardware_list

getFromHardwareApplications(int) - Method in interface org.biomage.Interface.HasHardwareApplications

Method to get HardwareApplication from HardwareApplications_list

getFromHardwareApplications(int) - Method in class org.biomage.Protocol.ProtocolApplication

Method to get HardwareApplication from HardwareApplications_list

getFromHardwareManufacturers(int) - Method in interface org.biomage.Interface.HasHardwareManufacturers

Method to get Contact from HardwareManufacturers_list

getFromHardwareManufacturers(int) - Method in class org.biomage.Protocol.Hardware

Method to get Contact from HardwareManufacturers_list

getFromHardwares(int) - Method in interface org.biomage.Interface.HasHardwares

Method to get Hardware from Hardwares_list

getFromHardwares(int) - Method in class org.biomage.Protocol.Protocol

Method to get Hardware from Hardwares_list

getFromImages(int) - Method in class org.biomage.BioAssay.ImageAcquisition

Method to get Image from Images_list

getFromImages(int) - Method in interface org.biomage.Interface.HasImages

Method to get Image from Images_list

getFromImmobilizedCharacteristics(int) - Method in class org.biomage.DesignElement.Reporter

Method to get BioSequence from ImmobilizedCharacteristics_list

getFromImmobilizedCharacteristics(int) - Method in interface org.biomage.Interface.HasImmobilizedCharacteristics

Method to get BioSequence from ImmobilizedCharacteristics_list

getFromLabels(int) - Method in class org.biomage.BioAssay.Channel

Method to get Compound from Labels_list

getFromLabels(int) - Method in class org.biomage.BioMaterial.LabeledExtract

Method to get Compound from Labels_list

getFromLabels(int) - Method in interface org.biomage.Interface.HasLabels

Method to get Compound from Labels_list

getFromMeasuredBioAssayData(int) - Method in class org.biomage.BioAssay.MeasuredBioAssay

Method to get MeasuredBioAssayData from MeasuredBioAssayData_list

getFromMeasuredBioAssayData(int) - Method in interface org.biomage.Interface.HasMeasuredBioAssayData

Method to get MeasuredBioAssayData from MeasuredBioAssayData_list

getFromMembers(int) - Method in class org.biomage.AuditAndSecurity.SecurityGroup

Method to get Contact from Members_list

getFromMembers(int) - Method in interface org.biomage.Interface.HasMembers

Method to get Contact from Members_list

getFromMismatchInformation(int) - Method in class org.biomage.DesignElement.ReporterPosition

Method to get MismatchInformation from MismatchInformation_list

getFromMismatchInformation(int) - Method in class org.biomage.DesignElement.FeatureInformation

Method to get MismatchInformation from MismatchInformation_list

getFromMismatchInformation(int) - Method in class org.biomage.DesignElement.CompositePosition

Method to get MismatchInformation from MismatchInformation_list

getFromMismatchInformation(int) - Method in interface org.biomage.Interface.HasMismatchInformation

Method to get MismatchInformation from MismatchInformation_list

getFromNodeContents(int) - Method in class org.biomage.HigherLevelAnalysis.Node

Method to get NodeContents from NodeContents_list

getFromNodeContents(int) - Method in interface org.biomage.Interface.HasNodeContents

Method to get NodeContents from NodeContents_list

getFromNodes(int) - Method in class org.biomage.HigherLevelAnalysis.Node

Method to get Node from Nodes_list

getFromNodes(int) - Method in class org.biomage.HigherLevelAnalysis.BioAssayDataCluster

Method to get Node from Nodes_list

getFromNodes(int) - Method in interface org.biomage.Interface.HasNodes

Method to get Node from Nodes_list

getFromNodeValue(int) - Method in class org.biomage.HigherLevelAnalysis.Node

Method to get NodeValue from NodeValue_list

getFromNodeValue(int) - Method in interface org.biomage.Interface.HasNodeValue

Method to get NodeValue from NodeValue_list

getFromOntologyEntries(int) - Method in class org.biomage.BioSequence.BioSequence

Method to get OntologyEntry from OntologyEntries_list

getFromOntologyEntries(int) - Method in interface org.biomage.Interface.HasOntologyEntries

Method to get OntologyEntry from OntologyEntries_list

getFromParameters(int) - Method in class org.biomage.BQS.BibliographicReference

Method to get OntologyEntry from Parameters_list

getFromParameters(int) - Method in interface org.biomage.Interface.HasParameters

Method to get OntologyEntry from Parameters_list

getFromParameterTypes(int) - Method in interface org.biomage.Interface.HasParameterTypes

Method to get Parameter from ParameterTypes_list

getFromParameterTypes(int) - Method in class org.biomage.Protocol.Parameterizable

Method to get Parameter from ParameterTypes_list

getFromParameterValues(int) - Method in interface org.biomage.Interface.HasParameterValues

Method to get ParameterValue from ParameterValues_list

getFromParameterValues(int) - Method in class org.biomage.Protocol.ParameterizableApplication

Method to get ParameterValue from ParameterValues_list

getFromPerformers(int) - Method in interface org.biomage.Interface.HasPerformers

Method to get Person from Performers_list

getFromPerformers(int) - Method in class org.biomage.Protocol.ProtocolApplication

Method to get Person from Performers_list

getFromPhysicalBioAssayData(int) - Method in class org.biomage.BioAssay.PhysicalBioAssay

Method to get Image from PhysicalBioAssayData_list

getFromPhysicalBioAssayData(int) - Method in interface org.biomage.Interface.HasPhysicalBioAssayData

Method to get Image from PhysicalBioAssayData_list

getFromPropertySets(int) - Method in class org.biomage.Common.NameValueType

Method to get NameValueType from PropertySets_list

getFromPropertySets(int) - Method in class org.biomage.Common.Extendable

Method to get NameValueType from PropertySets_list

getFromPropertySets(int) - Method in interface org.biomage.Interface.HasPropertySets

Method to get NameValueType from PropertySets_list

getFromProtocol_list(int) - Method in class org.biomage.Protocol.Protocol_package

Method to get Protocol from Protocol_list

getFromProtocolApplications(int) - Method in class org.biomage.Array.ArrayManufacture

Method to get ProtocolApplication from ProtocolApplications_list

getFromProtocolApplications(int) - Method in class org.biomage.ArrayDesign.ArrayDesign

Method to get ProtocolApplication from ProtocolApplications_list

getFromProtocolApplications(int) - Method in class org.biomage.BioEvent.BioEvent

Method to get ProtocolApplication from ProtocolApplications_list

getFromProtocolApplications(int) - Method in interface org.biomage.Interface.HasProtocolApplications

Method to get ProtocolApplication from ProtocolApplications_list

getFromProviders(int) - Method in class org.biomage.Experiment.Experiment

Method to get Contact from Providers_list

getFromProviders(int) - Method in interface org.biomage.Interface.HasProviders

Method to get Contact from Providers_list

getFromQualityControlStatistics(int) - Method in class org.biomage.Array.ArrayManufacture

Method to get NameValueType from QualityControlStatistics_list

getFromQualityControlStatistics(int) - Method in class org.biomage.BioMaterial.BioMaterial

Method to get NameValueType from QualityControlStatistics_list

getFromQualityControlStatistics(int) - Method in interface org.biomage.Interface.HasQualityControlStatistics

Method to get NameValueType from QualityControlStatistics_list

getFromQuantitationType_list(int) - Method in class org.biomage.QuantitationType.QuantitationType_package

Method to get QuantitationType from QuantitationType_list

getFromQuantitationTypeDimension_list(int) - Method in class org.biomage.BioAssayData.BioAssayData_package

Method to get QuantitationTypeDimension from QuantitationTypeDimension_list

getFromQuantitationTypeMap_list(int) - Method in class org.biomage.BioAssayData.BioAssayData_package

Method to get QuantitationTypeMap from QuantitationTypeMap_list

getFromQuantitationTypeMaps(int) - Method in class org.biomage.BioAssayData.QuantitationTypeMapping

Method to get QuantitationTypeMap from QuantitationTypeMaps_list

getFromQuantitationTypeMaps(int) - Method in interface org.biomage.Interface.HasQuantitationTypeMaps

Method to get QuantitationTypeMap from QuantitationTypeMaps_list

getFromQuantitationTypes(int) - Method in class org.biomage.BioAssayData.QuantitationTypeDimension

Method to get QuantitationType from QuantitationTypes_list

getFromQuantitationTypes(int) - Method in interface org.biomage.Interface.HasQuantitationTypes

Method to get QuantitationType from QuantitationTypes_list

getFromReadGroups(int) - Method in class org.biomage.AuditAndSecurity.Security

Method to get SecurityGroup from ReadGroups_list

getFromReadGroups(int) - Method in interface org.biomage.Interface.HasReadGroups

Method to get SecurityGroup from ReadGroups_list

getFromRegions(int) - Method in class org.biomage.BioSequence.SeqFeature

Method to get SeqFeatureLocation from Regions_list

getFromRegions(int) - Method in interface org.biomage.Interface.HasRegions

Method to get SeqFeatureLocation from Regions_list

getFromReporter_list(int) - Method in class org.biomage.DesignElement.DesignElement_package

Method to get Reporter from Reporter_list

getFromReporterCompositeMap_list(int) - Method in class org.biomage.DesignElement.DesignElement_package

Method to get ReporterCompositeMap from ReporterCompositeMap_list

getFromReporterCompositeMaps(int) - Method in class org.biomage.DesignElement.CompositeSequence

Method to get ReporterCompositeMap from ReporterCompositeMaps_list

getFromReporterCompositeMaps(int) - Method in interface org.biomage.Interface.HasReporterCompositeMaps

Method to get ReporterCompositeMap from ReporterCompositeMaps_list

getFromReporterGroup_list(int) - Method in class org.biomage.ArrayDesign.ArrayDesign_package

Method to get ReporterGroup from ReporterGroup_list

getFromReporterGroups(int) - Method in class org.biomage.ArrayDesign.ArrayDesign

Method to get ReporterGroup from ReporterGroups_list

getFromReporterGroups(int) - Method in interface org.biomage.Interface.HasReporterGroups

Method to get ReporterGroup from ReporterGroups_list

getFromReporterPositionSources(int) - Method in class org.biomage.DesignElement.ReporterCompositeMap

Method to get ReporterPosition from ReporterPositionSources_list

getFromReporterPositionSources(int) - Method in interface org.biomage.Interface.HasReporterPositionSources

Method to get ReporterPosition from ReporterPositionSources_list

getFromReporters(int) - Method in class org.biomage.ArrayDesign.ReporterGroup

Method to get Reporter from Reporters_list

getFromReporters(int) - Method in class org.biomage.BioAssayData.ReporterDimension

Method to get Reporter from Reporters_list

getFromReporters(int) - Method in interface org.biomage.Interface.HasReporters

Method to get Reporter from Reporters_list

getFromRoles(int) - Method in class org.biomage.AuditAndSecurity.Contact

Method to get OntologyEntry from Roles_list

getFromRoles(int) - Method in interface org.biomage.Interface.HasRoles

Method to get OntologyEntry from Roles_list

getFromSecurity_list(int) - Method in class org.biomage.AuditAndSecurity.AuditAndSecurity_package

Method to get Security from Security_list

getFromSecurityGroup_list(int) - Method in class org.biomage.AuditAndSecurity.AuditAndSecurity_package

Method to get SecurityGroup from SecurityGroup_list

getFromSeqFeatures(int) - Method in class org.biomage.BioSequence.BioSequence

Method to get SeqFeature from SeqFeatures_list

getFromSeqFeatures(int) - Method in interface org.biomage.Interface.HasSeqFeatures

Method to get SeqFeature from SeqFeatures_list

getFromSequenceDatabases(int) - Method in class org.biomage.BioSequence.BioSequence

Method to get DatabaseEntry from SequenceDatabases_list

getFromSequenceDatabases(int) - Method in interface org.biomage.Interface.HasSequenceDatabases

Method to get DatabaseEntry from SequenceDatabases_list

getFromSoftware_list(int) - Method in class org.biomage.Protocol.Protocol_package

Method to get Software from Software_list

getFromSoftwareApplications(int) - Method in interface org.biomage.Interface.HasSoftwareApplications

Method to get SoftwareApplication from SoftwareApplications_list

getFromSoftwareApplications(int) - Method in class org.biomage.Protocol.ProtocolApplication

Method to get SoftwareApplication from SoftwareApplications_list

getFromSoftwareManufacturers(int) - Method in interface org.biomage.Interface.HasSoftwareManufacturers

Method to get Contact from SoftwareManufacturers_list

getFromSoftwareManufacturers(int) - Method in class org.biomage.Protocol.Software

Method to get Contact from SoftwareManufacturers_list

getFromSoftwares(int) - Method in interface org.biomage.Interface.HasSoftwares

Method to get Software from Softwares_list

getFromSoftwares(int) - Method in class org.biomage.Protocol.Software

Method to get Software from Softwares_list

getFromSoftwares(int) - Method in class org.biomage.Protocol.Protocol

Method to get Software from Softwares_list

getFromSoftwares(int) - Method in class org.biomage.Protocol.Hardware

Method to get Software from Softwares_list

getFromSourceBioAssays(int) - Method in class org.biomage.BioAssayData.BioAssayMap

Method to get BioAssay from SourceBioAssays_list

getFromSourceBioAssays(int) - Method in interface org.biomage.Interface.HasSourceBioAssays

Method to get BioAssay from SourceBioAssays_list

getFromSourceBioMaterialMeasurements(int) - Method in class org.biomage.BioAssay.BioAssayCreation

Method to get BioMaterialMeasurement from SourceBioMaterialMeasurements_list

getFromSourceBioMaterialMeasurements(int) - Method in class org.biomage.BioMaterial.Treatment

Method to get BioMaterialMeasurement from SourceBioMaterialMeasurements_list

getFromSourceBioMaterialMeasurements(int) - Method in interface org.biomage.Interface.HasSourceBioMaterialMeasurements

Method to get BioMaterialMeasurement from SourceBioMaterialMeasurements_list

getFromSourcesQuantitationType(int) - Method in class org.biomage.BioAssayData.QuantitationTypeMap

Method to get QuantitationType from SourcesQuantitationType_list

getFromSourcesQuantitationType(int) - Method in interface org.biomage.Interface.HasSourcesQuantitationType

Method to get QuantitationType from SourcesQuantitationType_list

getFromSubregions(int) - Method in class org.biomage.BioSequence.SeqFeatureLocation

Method to get SeqFeatureLocation from Subregions_list

getFromSubregions(int) - Method in interface org.biomage.Interface.HasSubregions

Method to get SeqFeatureLocation from Subregions_list

getFromSummaryStatistics(int) - Method in class org.biomage.BioAssayData.BioAssayData

Method to get NameValueType from SummaryStatistics_list

getFromSummaryStatistics(int) - Method in interface org.biomage.Interface.HasSummaryStatistics

Method to get NameValueType from SummaryStatistics_list

getFromTopLevelBioAssays(int) - Method in class org.biomage.Experiment.ExperimentDesign

Method to get BioAssay from TopLevelBioAssays_list

getFromTopLevelBioAssays(int) - Method in interface org.biomage.Interface.HasTopLevelBioAssays

Method to get BioAssay from TopLevelBioAssays_list

getFromTreatments(int) - Method in class org.biomage.BioMaterial.BioMaterial

Method to get Treatment from Treatments_list

getFromTreatments(int) - Method in interface org.biomage.Interface.HasTreatments

Method to get Treatment from Treatments_list

getFromTypes(int) - Method in class org.biomage.ArrayDesign.DesignElementGroup

Method to get OntologyEntry from Types_list

getFromTypes(int) - Method in class org.biomage.Experiment.ExperimentDesign

Method to get OntologyEntry from Types_list

getFromTypes(int) - Method in interface org.biomage.Interface.HasTypes

Method to get OntologyEntry from Types_list

getFromWriteGroups(int) - Method in class org.biomage.AuditAndSecurity.Security

Method to get SecurityGroup from WriteGroups_list

getFromWriteGroups(int) - Method in interface org.biomage.Interface.HasWriteGroups

Method to get SecurityGroup from WriteGroups_list

getFromZoneGroups(int) - Method in class org.biomage.ArrayDesign.PhysicalArrayDesign

Method to get ZoneGroup from ZoneGroups_list

getFromZoneGroups(int) - Method in interface org.biomage.Interface.HasZoneGroups

Method to get ZoneGroup from ZoneGroups_list

getFromZoneLocations(int) - Method in class org.biomage.ArrayDesign.ZoneGroup

Method to get Zone from ZoneLocations_list

getFromZoneLocations(int) - Method in interface org.biomage.Interface.HasZoneLocations

Method to get Zone from ZoneLocations_list

getFullName() - Method in class org.biomage.tools.generate_er.DataColumn

Description: get the full name of the column

getFullName(String) - Method in class org.biomage.tools.generate_er.CreateMageER

Description: change the first letter to be capitalized and insert a space between words dataType to Data Type

getHardware_list() - Method in class org.biomage.Protocol.Protocol_package

Get method for hardware_list

getHardware() - Method in interface org.biomage.Interface.HasHardware

Get method for hardware

getHardware() - Method in class org.biomage.Protocol.Software

Get method for hardware

getHardware() - Method in class org.biomage.Protocol.HardwareApplication

Get method for hardware

getHardwareApplications() - Method in interface org.biomage.Interface.HasHardwareApplications

Get method for hardwareApplications

getHardwareApplications() - Method in class org.biomage.Protocol.ProtocolApplication

Get method for hardwareApplications

getHardwareManufacturers() - Method in interface org.biomage.Interface.HasHardwareManufacturers

Get method for hardwareManufacturers

getHardwareManufacturers() - Method in class org.biomage.Protocol.Hardware

Get method for hardwareManufacturers

getHardwares() - Method in interface org.biomage.Interface.HasHardwares

Get method for hardwares

getHardwares() - Method in class org.biomage.Protocol.Protocol

Get method for hardwares

getHigherLevelAnalysis_package() - Method in class org.biomage.Common.MAGEJava

Get method for higherLevelAnalysis_package

getIdentifier() - Method in class org.biomage.Common.Identifiable

Get method for identifier

getIdentifierLIMS() - Method in class org.biomage.Array.ManufactureLIMS

Get method for identifierLIMS

getIdentifierLIMS() - Method in interface org.biomage.Interface.HasIdentifierLIMS

Get method for identifierLIMS

getIdVector() - Method in class org.biomage.tools.generate_er.Unique

Description: get the vector holding all column_ids for Unique

getImages() - Method in class org.biomage.BioAssay.ImageAcquisition

Get method for images

getImages() - Method in interface org.biomage.Interface.HasImages

Get method for images

getImmobilizedCharacteristics() - Method in class org.biomage.DesignElement.Reporter

Get method for immobilizedCharacteristics

getImmobilizedCharacteristics() - Method in interface org.biomage.Interface.HasImmobilizedCharacteristics

Get method for immobilizedCharacteristics

getIndexColumn() - Method in class org.biomage.tools.generate_er.Index

Description: get the column the is indexed

getIndexVector() - Method in class org.biomage.tools.generate_er.Table

Description: get the vector containing all indexes

getInformation() - Method in class org.biomage.Array.Array

Get method for information

getInformation() - Method in interface org.biomage.Interface.HasInformation

Get method for information

getIsAbstract() - Method in class org.biomage.tools.generate_er.Table

Description: get if the class is abstract

getIsApproximateLength() - Method in class org.biomage.BioSequence.BioSequence

Get method for isApproximateLength

getIsBackground() - Method in class org.biomage.QuantitationType.QuantitationType

Get method for isBackground

getIsCircular() - Method in class org.biomage.BioSequence.BioSequence

Get method for isCircular

getIsSolvent() - Method in class org.biomage.BioMaterial.Compound

Get method for isSolvent

getIssue() - Method in class org.biomage.BQS.BibliographicReference

Get method for issue

getKindCV() - Method in class org.biomage.Measurement.Measurement

Get method for kindCV

getLabels() - Method in class org.biomage.BioAssay.Channel

Get method for labels

getLabels() - Method in class org.biomage.BioMaterial.LabeledExtract

Get method for labels

getLabels() - Method in interface org.biomage.Interface.HasLabels

Get method for labels

getLastName() - Method in class org.biomage.AuditAndSecurity.Person

Get method for lastName

getLength() - Method in class org.biomage.Array.ArrayGroup

Get method for length

getLength() - Method in class org.biomage.BioSequence.BioSequence

Get method for length

getLinkingKey() - Method in class org.biomage.tools.generate_er.Table

Description: get the linking key for the table

getLinkOne() - Method in class org.biomage.tools.generate_er.LinkingKey

Description: get the column of link1 linking key

getLinkOneId() - Method in class org.biomage.tools.generate_er.LinkingKey

Description: get the column id of link1 linking key

getLinkTwo() - Method in class org.biomage.tools.generate_er.LinkingKey

Description: get the column of link2 linking key

getLinkTwoId() - Method in class org.biomage.tools.generate_er.LinkingKey

Description: get the column id of link2 linking key

getLowerRightX() - Method in class org.biomage.ArrayDesign.Zone

Get method for lowerRightX

getLowerRightY() - Method in class org.biomage.ArrayDesign.Zone

Get method for lowerRightY

getMAGEJava() - Method in class org.biomage.tools.xmlutils.MAGEContentHandler

Get the finished MAGE top-level object

getMake() - Method in class org.biomage.Protocol.Hardware

Get method for make

getManufacturingDate() - Method in class org.biomage.Array.ArrayManufacture

Get method for manufacturingDate

getMaterialType() - Method in class org.biomage.BioMaterial.BioMaterial

Get method for materialType

getMaterialType() - Method in interface org.biomage.Interface.HasMaterialType

Get method for materialType

getMaxCard() - Method in class org.biomage.tools.generate_er.AssociationColumn

Description: return the maximum cardinality of the assocaition class.

getMeasuredBioAssayData() - Method in class org.biomage.BioAssay.MeasuredBioAssay

Get method for measuredBioAssayData

getMeasuredBioAssayData() - Method in interface org.biomage.Interface.HasMeasuredBioAssayData

Get method for measuredBioAssayData

getMeasuredBioAssayTarget() - Method in class org.biomage.BioAssay.FeatureExtraction

Get method for measuredBioAssayTarget

getMeasuredBioAssayTarget() - Method in interface org.biomage.Interface.HasMeasuredBioAssayTarget

Get method for measuredBioAssayTarget

getMeasurement_package() - Method in class org.biomage.Common.MAGEJava

Get method for measurement_package

getMeasurement() - Method in class org.biomage.BioMaterial.CompoundMeasurement

Get method for measurement

getMeasurement() - Method in class org.biomage.BioMaterial.BioMaterialMeasurement

Get method for measurement

getMeasurement() - Method in class org.biomage.Experiment.FactorValue

Get method for measurement

getMeasurement() - Method in interface org.biomage.Interface.HasMeasurement

Get method for measurement

getMembers() - Method in class org.biomage.AuditAndSecurity.SecurityGroup

Get method for members

getMembers() - Method in interface org.biomage.Interface.HasMembers

Get method for members

getMerckIndex() - Method in class org.biomage.BioMaterial.Compound

Get method for merckIndex

getMerckIndex() - Method in interface org.biomage.Interface.HasMerckIndex

Get method for merckIndex

getMidInitials() - Method in class org.biomage.AuditAndSecurity.Person

Get method for midInitials

getMinCard() - Method in class org.biomage.tools.generate_er.AssociationColumn

Description: return the minimum cardinality of the assocaition class.

getMismatchInformation() - Method in class org.biomage.DesignElement.ReporterPosition

Get method for mismatchInformation

getMismatchInformation() - Method in class org.biomage.DesignElement.FeatureInformation

Get method for mismatchInformation

getMismatchInformation() - Method in class org.biomage.DesignElement.CompositePosition

Get method for mismatchInformation

getMismatchInformation() - Method in interface org.biomage.Interface.HasMismatchInformation

Get method for mismatchInformation

getModel() - Method in class org.biomage.Protocol.Hardware

Get method for model

getName() - Method in class org.biomage.Array.ArrayGroup.OrientationMarkPosition

getName() - Method in class org.biomage.AuditAndSecurity.Audit.Action

getName() - Method in class org.biomage.BioAssayData.BioDataCube.Order

getName() - Method in class org.biomage.BioSequence.SeqFeature.Basis

getName() - Method in class org.biomage.Common.NameValueType

Get method for name

getName() - Method in class org.biomage.Common.Identifiable

Get method for name

getName() - Method in class org.biomage.HigherLevelAnalysis.NodeValue

Get method for name

getName() - Method in class org.biomage.Measurement.VolumeUnit.UnitNameCV

getName() - Method in class org.biomage.Measurement.TimeUnit.UnitNameCV

getName() - Method in class org.biomage.Measurement.TemperatureUnit.UnitNameCV

getName() - Method in class org.biomage.Measurement.QuantityUnit.UnitNameCV

getName() - Method in class org.biomage.Measurement.Measurement.Type

getName() - Method in class org.biomage.Measurement.Measurement.KindCV

getName() - Method in class org.biomage.Measurement.MassUnit.UnitNameCV

getName() - Method in class org.biomage.Measurement.DistanceUnit.UnitNameCV

getName() - Method in class org.biomage.Measurement.ConcentrationUnit.UnitNameCV

getName() - Method in class org.biomage.tools.generate_er.Index

Description: get the name of the index

getName() - Method in class org.biomage.tools.generate_er.DataColumn

Description: get teh name of the column

getName() - Method in class org.biomage.tools.generate_er.Table

Description: get teh name of the table

getNameAction() - Method in class org.biomage.AuditAndSecurity.Audit

Return the current name of the Enumeration type of Action.

getNameBasis() - Method in class org.biomage.BioSequence.SeqFeature

Return the current name of the Enumeration type of Basis.

getNameByValue(int) - Method in class org.biomage.Array.ArrayGroup.OrientationMarkPosition

getNameByValue(int) - Method in class org.biomage.AuditAndSecurity.Audit.Action

getNameByValue(int) - Method in class org.biomage.BioAssayData.BioDataCube.Order

getNameByValue(int) - Method in class org.biomage.BioSequence.SeqFeature.Basis

getNameByValue(int) - Method in class org.biomage.Measurement.VolumeUnit.UnitNameCV

getNameByValue(int) - Method in class org.biomage.Measurement.TimeUnit.UnitNameCV

getNameByValue(int) - Method in class org.biomage.Measurement.TemperatureUnit.UnitNameCV

getNameByValue(int) - Method in class org.biomage.Measurement.QuantityUnit.UnitNameCV

getNameByValue(int) - Method in class org.biomage.Measurement.Measurement.Type

getNameByValue(int) - Method in class org.biomage.Measurement.Measurement.KindCV

getNameByValue(int) - Method in class org.biomage.Measurement.MassUnit.UnitNameCV

getNameByValue(int) - Method in class org.biomage.Measurement.DistanceUnit.UnitNameCV

getNameByValue(int) - Method in class org.biomage.Measurement.ConcentrationUnit.UnitNameCV

getNameByValueAction(int) - Method in class org.biomage.AuditAndSecurity.Audit

For Action get the Name of the Enumeration type by passing a Value to it.

getNameByValueBasis(int) - Method in class org.biomage.BioSequence.SeqFeature

For Basis get the Name of the Enumeration type by passing a Value to it.

getNameByValueKindCV(int) - Method in class org.biomage.Measurement.Measurement

For KindCV get the Name of the Enumeration type by passing a Value to it.

getNameByValueOrder(int) - Method in class org.biomage.BioAssayData.BioDataCube

For Order get the Name of the Enumeration type by passing a Value to it.

getNameByValueOrientationMarkPosition(int) - Method in class org.biomage.Array.ArrayGroup

For OrientationMarkPosition get the Name of the Enumeration type by passing a Value to it.

getNameByValueType(int) - Method in class org.biomage.Measurement.Measurement

For Type get the Name of the Enumeration type by passing a Value to it.

getNameByValueUnitNameCV(int) - Method in class org.biomage.Measurement.VolumeUnit

For UnitNameCV get the Name of the Enumeration type by passing a Value to it.

getNameByValueUnitNameCV(int) - Method in class org.biomage.Measurement.TimeUnit

For UnitNameCV get the Name of the Enumeration type by passing a Value to it.

getNameByValueUnitNameCV(int) - Method in class org.biomage.Measurement.TemperatureUnit

For UnitNameCV get the Name of the Enumeration type by passing a Value to it.

getNameByValueUnitNameCV(int) - Method in class org.biomage.Measurement.QuantityUnit

For UnitNameCV get the Name of the Enumeration type by passing a Value to it.

getNameByValueUnitNameCV(int) - Method in class org.biomage.Measurement.MassUnit

For UnitNameCV get the Name of the Enumeration type by passing a Value to it.

getNameByValueUnitNameCV(int) - Method in class org.biomage.Measurement.DistanceUnit

For UnitNameCV get the Name of the Enumeration type by passing a Value to it.

getNameByValueUnitNameCV(int) - Method in class org.biomage.Measurement.ConcentrationUnit

For UnitNameCV get the Name of the Enumeration type by passing a Value to it.

getNameKindCV() - Method in class org.biomage.Measurement.Measurement

Return the current name of the Enumeration type of KindCV.

getNameOrder() - Method in class org.biomage.BioAssayData.BioDataCube

Return the current name of the Enumeration type of Order.

getNameOrientationMarkPosition() - Method in class org.biomage.Array.ArrayGroup

Return the current name of the Enumeration type of OrientationMarkPosition.

getNameType() - Method in class org.biomage.Measurement.Measurement

Return the current name of the Enumeration type of Type.

getNameUnitNameCV() - Method in class org.biomage.Measurement.VolumeUnit

Return the current name of the Enumeration type of UnitNameCV.

getNameUnitNameCV() - Method in class org.biomage.Measurement.TimeUnit

Return the current name of the Enumeration type of UnitNameCV.

getNameUnitNameCV() - Method in class org.biomage.Measurement.TemperatureUnit

Return the current name of the Enumeration type of UnitNameCV.

getNameUnitNameCV() - Method in class org.biomage.Measurement.QuantityUnit

Return the current name of the Enumeration type of UnitNameCV.

getNameUnitNameCV() - Method in class org.biomage.Measurement.MassUnit

Return the current name of the Enumeration type of UnitNameCV.

getNameUnitNameCV() - Method in class org.biomage.Measurement.DistanceUnit

Return the current name of the Enumeration type of UnitNameCV.

getNameUnitNameCV() - Method in class org.biomage.Measurement.ConcentrationUnit

Return the current name of the Enumeration type of UnitNameCV.

getNewSequence() - Method in class org.biomage.DesignElement.MismatchInformation

Get method for newSequence

getNodeContents() - Method in class org.biomage.HigherLevelAnalysis.Node

Get method for nodeContents

getNodeContents() - Method in interface org.biomage.Interface.HasNodeContents

Get method for nodeContents

getNodes() - Method in class org.biomage.HigherLevelAnalysis.Node

Get method for nodes

getNodes() - Method in class org.biomage.HigherLevelAnalysis.BioAssayDataCluster

Get method for nodes

getNodes() - Method in interface org.biomage.Interface.HasNodes

Get method for nodes

getNodeValue() - Method in class org.biomage.HigherLevelAnalysis.Node

Get method for nodeValue

getNodeValue() - Method in interface org.biomage.Interface.HasNodeValue

Get method for nodeValue

getNormalizationDescription() - Method in class org.biomage.Experiment.ExperimentDesign

Get method for normalizationDescription

getNormalizationDescription() - Method in interface org.biomage.Interface.HasNormalizationDescription

Get method for normalizationDescription

getNumArrays() - Method in class org.biomage.Array.ArrayGroup

Get method for numArrays

getNumberOfFeatures() - Method in class org.biomage.ArrayDesign.ArrayDesign

Get method for numberOfFeatures

getNumFeaturesPerCol() - Method in class org.biomage.ArrayDesign.ZoneLayout

Get method for numFeaturesPerCol

getNumFeaturesPerRow() - Method in class org.biomage.ArrayDesign.ZoneLayout

Get method for numFeaturesPerRow

getOntologyEntries() - Method in class org.biomage.BioSequence.BioSequence

Get method for ontologyEntries

getOntologyEntries() - Method in interface org.biomage.Interface.HasOntologyEntries

Get method for ontologyEntries

getOntologyReference() - Method in class org.biomage.Description.OntologyEntry

Get method for ontologyReference

getOntologyReference() - Method in interface org.biomage.Interface.HasOntologyReference

Get method for ontologyReference

getOrder() - Method in class org.biomage.BioAssayData.BioDataCube

Get method for order

getOrder() - Method in class org.biomage.BioMaterial.Treatment

Get method for order

getOrientationMark() - Method in class org.biomage.Array.ArrayGroup

Get method for orientationMark

getOrientationMarkPosition() - Method in class org.biomage.Array.ArrayGroup

Get method for orientationMarkPosition

getOriginRelativeTo() - Method in class org.biomage.Array.Array

Get method for originRelativeTo

getOtherKind() - Method in class org.biomage.Measurement.Measurement

Get method for otherKind

getOtherNav() - Method in class org.biomage.tools.generate_er.AssociationColumn

Description: return the maximum cardinality of this class for the association relationship

getOwner() - Method in class org.biomage.AuditAndSecurity.Security

Get method for owner

getOwner() - Method in interface org.biomage.Interface.HasOwner

Get method for owner

getOwner() - Method in class org.biomage.tools.generate_er.AssociationColumn

Description: return if this association is the owner of the relationship.

getPages() - Method in class org.biomage.BQS.BibliographicReference

Get method for pages

getParameters() - Method in class org.biomage.BQS.BibliographicReference

Get method for parameters

getParameters() - Method in interface org.biomage.Interface.HasParameters

Get method for parameters

getParameterType() - Method in interface org.biomage.Interface.HasParameterType

Get method for parameterType

getParameterType() - Method in class org.biomage.Protocol.ParameterValue

Get method for parameterType

getParameterTypes() - Method in interface org.biomage.Interface.HasParameterTypes

Get method for parameterTypes

getParameterTypes() - Method in class org.biomage.Protocol.Parameterizable

Get method for parameterTypes

getParameterValues() - Method in interface org.biomage.Interface.HasParameterValues

Get method for parameterValues

getParameterValues() - Method in class org.biomage.Protocol.ParameterizableApplication

Get method for parameterValues

getParent() - Method in class org.biomage.AuditAndSecurity.Organization

Get method for parent

getParent() - Method in interface org.biomage.Interface.HasParent

Get method for parent

getPerformer() - Method in class org.biomage.AuditAndSecurity.Audit

Get method for performer

getPerformer() - Method in interface org.biomage.Interface.HasPerformer

Get method for performer

getPerformers() - Method in interface org.biomage.Interface.HasPerformers

Get method for performers

getPerformers() - Method in class org.biomage.Protocol.ProtocolApplication

Get method for performers

getPhone() - Method in class org.biomage.AuditAndSecurity.Contact

Get method for phone

getPhysicalBioAssay() - Method in class org.biomage.BioAssay.BioAssayTreatment

Get method for physicalBioAssay

getPhysicalBioAssay() - Method in interface org.biomage.Interface.HasPhysicalBioAssay

Get method for physicalBioAssay

getPhysicalBioAssayData() - Method in class org.biomage.BioAssay.PhysicalBioAssay

Get method for physicalBioAssayData

getPhysicalBioAssayData() - Method in interface org.biomage.Interface.HasPhysicalBioAssayData

Get method for physicalBioAssayData

getPhysicalBioAssaySource() - Method in class org.biomage.BioAssay.FeatureExtraction

Get method for physicalBioAssaySource

getPhysicalBioAssaySource() - Method in interface org.biomage.Interface.HasPhysicalBioAssaySource

Get method for physicalBioAssaySource

getPhysicalBioAssayTarget() - Method in class org.biomage.BioAssay.BioAssayCreation

Get method for physicalBioAssayTarget

getPhysicalBioAssayTarget() - Method in interface org.biomage.Interface.HasPhysicalBioAssayTarget

Get method for physicalBioAssayTarget

getPK() - Method in class org.biomage.tools.generate_er.Table

Description: get primary key of the table

getPolymerType() - Method in class org.biomage.BioSequence.BioSequence

Get method for polymerType

getPolymerType() - Method in interface org.biomage.Interface.HasPolymerType

Get method for polymerType

getPosition() - Method in class org.biomage.Array.Fiducial

Get method for position

getPosition() - Method in class org.biomage.DesignElement.Feature

Get method for position

getPosition() - Method in interface org.biomage.Interface.HasPosition

Get method for position

getPositionDelta() - Method in class org.biomage.Array.ZoneDefect

Get method for positionDelta

getPositionDelta() - Method in class org.biomage.Array.FeatureDefect

Get method for positionDelta

getPositionDelta() - Method in interface org.biomage.Interface.HasPositionDelta

Get method for positionDelta

getProducerTransformation() - Method in class org.biomage.BioAssayData.DerivedBioAssayData

Get method for producerTransformation

getProducerTransformation() - Method in interface org.biomage.Interface.HasProducerTransformation

Get method for producerTransformation

getPropertySets() - Method in class org.biomage.Common.NameValueType

Get method for propertySets

getPropertySets() - Method in class org.biomage.Common.Extendable

Get method for propertySets

getPropertySets() - Method in interface org.biomage.Interface.HasPropertySets

Get method for propertySets

getProtocol_list() - Method in class org.biomage.Protocol.Protocol_package

Get method for protocol_list

getProtocol_package() - Method in class org.biomage.Common.MAGEJava

Get method for protocol_package

getProtocol() - Method in interface org.biomage.Interface.HasProtocol

Get method for protocol

getProtocol() - Method in class org.biomage.Protocol.ProtocolApplication

Get method for protocol

getProtocolApplications() - Method in class org.biomage.Array.ArrayManufacture

Get method for protocolApplications

getProtocolApplications() - Method in class org.biomage.ArrayDesign.ArrayDesign

Get method for protocolApplications

getProtocolApplications() - Method in class org.biomage.BioEvent.BioEvent

Get method for protocolApplications

getProtocolApplications() - Method in interface org.biomage.Interface.HasProtocolApplications

Get method for protocolApplications

getProviders() - Method in class org.biomage.Experiment.Experiment

Get method for providers

getProviders() - Method in interface org.biomage.Interface.HasProviders

Get method for providers

getPublication() - Method in class org.biomage.BQS.BibliographicReference

Get method for publication

getPublisher() - Method in class org.biomage.BQS.BibliographicReference

Get method for publisher

getQuality() - Method in class org.biomage.Array.ManufactureLIMS

Get method for quality

getQualityControlDescription() - Method in class org.biomage.Experiment.ExperimentDesign

Get method for qualityControlDescription

getQualityControlDescription() - Method in interface org.biomage.Interface.HasQualityControlDescription

Get method for qualityControlDescription

getQualityControlStatistics() - Method in class org.biomage.Array.ArrayManufacture

Get method for qualityControlStatistics

getQualityControlStatistics() - Method in class org.biomage.BioMaterial.BioMaterial

Get method for qualityControlStatistics

getQualityControlStatistics() - Method in interface org.biomage.Interface.HasQualityControlStatistics

Get method for qualityControlStatistics

getQuantitationDimension() - Method in class org.biomage.HigherLevelAnalysis.NodeContents

Get method for quantitationDimension

getQuantitationDimension() - Method in interface org.biomage.Interface.HasQuantitationDimension

Get method for quantitationDimension

getQuantitationType_list() - Method in class org.biomage.QuantitationType.QuantitationType_package

Get method for quantitationType_list

getQuantitationType_package() - Method in class org.biomage.Common.MAGEJava

Get method for quantitationType_package

getQuantitationType() - Method in class org.biomage.BioAssayData.BioAssayDatum

Get method for quantitationType

getQuantitationType() - Method in interface org.biomage.Interface.HasQuantitationType

Get method for quantitationType

getQuantitationTypeDimension_list() - Method in class org.biomage.BioAssayData.BioAssayData_package

Get method for quantitationTypeDimension_list

getQuantitationTypeDimension() - Method in class org.biomage.BioAssayData.BioAssayData

Get method for quantitationTypeDimension

getQuantitationTypeDimension() - Method in interface org.biomage.Interface.HasQuantitationTypeDimension

Get method for quantitationTypeDimension

getQuantitationTypeMap_list() - Method in class org.biomage.BioAssayData.BioAssayData_package

Get method for quantitationTypeMap_list

getQuantitationTypeMapping() - Method in class org.biomage.BioAssayData.Transformation

Get method for quantitationTypeMapping

getQuantitationTypeMapping() - Method in interface org.biomage.Interface.HasQuantitationTypeMapping

Get method for quantitationTypeMapping

getQuantitationTypeMaps() - Method in class org.biomage.BioAssayData.QuantitationTypeMapping

Get method for quantitationTypeMaps

getQuantitationTypeMaps() - Method in interface org.biomage.Interface.HasQuantitationTypeMaps

Get method for quantitationTypeMaps

getQuantitationTypes() - Method in class org.biomage.BioAssayData.QuantitationTypeDimension

Get method for quantitationTypes

getQuantitationTypes() - Method in interface org.biomage.Interface.HasQuantitationTypes

Get method for quantitationTypes

getReadGroups() - Method in class org.biomage.AuditAndSecurity.Security

Get method for readGroups

getReadGroups() - Method in interface org.biomage.Interface.HasReadGroups

Get method for readGroups

getRegions() - Method in class org.biomage.BioSequence.SeqFeature

Get method for regions

getRegions() - Method in interface org.biomage.Interface.HasRegions

Get method for regions

getReleaseDate() - Method in class org.biomage.Protocol.SoftwareApplication

Get method for releaseDate

getReplacedLength() - Method in class org.biomage.DesignElement.MismatchInformation

Get method for replacedLength

getReplicateDescription() - Method in class org.biomage.Experiment.ExperimentDesign

Get method for replicateDescription

getReplicateDescription() - Method in interface org.biomage.Interface.HasReplicateDescription

Get method for replicateDescription

getReporter_list() - Method in class org.biomage.DesignElement.DesignElement_package

Get method for reporter_list

getReporter() - Method in class org.biomage.DesignElement.ReporterPosition

Get method for reporter

getReporter() - Method in class org.biomage.DesignElement.FeatureReporterMap

Get method for reporter

getReporter() - Method in interface org.biomage.Interface.HasReporter

Get method for reporter

getReporterCompositeMap_list() - Method in class org.biomage.DesignElement.DesignElement_package

Get method for reporterCompositeMap_list

getReporterCompositeMaps() - Method in class org.biomage.DesignElement.CompositeSequence

Get method for reporterCompositeMaps

getReporterCompositeMaps() - Method in interface org.biomage.Interface.HasReporterCompositeMaps

Get method for reporterCompositeMaps

getReporterGroup_list() - Method in class org.biomage.ArrayDesign.ArrayDesign_package

Get method for reporterGroup_list

getReporterGroups() - Method in class org.biomage.ArrayDesign.ArrayDesign

Get method for reporterGroups

getReporterGroups() - Method in interface org.biomage.Interface.HasReporterGroups

Get method for reporterGroups

getReporterPositionSources() - Method in class org.biomage.DesignElement.ReporterCompositeMap

Get method for reporterPositionSources

getReporterPositionSources() - Method in interface org.biomage.Interface.HasReporterPositionSources

Get method for reporterPositionSources

getReporters() - Method in class org.biomage.ArrayDesign.ReporterGroup

Get method for reporters

getReporters() - Method in class org.biomage.BioAssayData.ReporterDimension

Get method for reporters

getReporters() - Method in interface org.biomage.Interface.HasReporters

Get method for reporters

getRoles() - Method in class org.biomage.AuditAndSecurity.Contact

Get method for roles

getRoles() - Method in interface org.biomage.Interface.HasRoles

Get method for roles

getRow() - Method in class org.biomage.ArrayDesign.Zone

Get method for row

getRow() - Method in class org.biomage.DesignElement.FeatureLocation

Get method for row

getScale() - Method in class org.biomage.HigherLevelAnalysis.NodeValue

Get method for scale

getScale() - Method in interface org.biomage.Interface.HasScale

Get method for scale

getScale() - Method in class org.biomage.QuantitationType.QuantitationType

Get method for scale

getSecurity_list() - Method in class org.biomage.AuditAndSecurity.AuditAndSecurity_package

Get method for security_list

getSecurity() - Method in class org.biomage.Common.Describable

Get method for security

getSecurity() - Method in interface org.biomage.Interface.HasSecurity

Get method for security

getSecurityGroup_list() - Method in class org.biomage.AuditAndSecurity.AuditAndSecurity_package

Get method for securityGroup_list

getSeqFeatures() - Method in class org.biomage.BioSequence.BioSequence

Get method for seqFeatures

getSeqFeatures() - Method in interface org.biomage.Interface.HasSeqFeatures

Get method for seqFeatures

getSequence() - Method in class org.biomage.BioSequence.BioSequence

Get method for sequence

getSequenceDatabases() - Method in class org.biomage.BioSequence.BioSequence

Get method for sequenceDatabases

getSequenceDatabases() - Method in interface org.biomage.Interface.HasSequenceDatabases

Get method for sequenceDatabases

getSerialNumber() - Method in class org.biomage.Protocol.HardwareApplication

Get method for serialNumber

getSoftware_list() - Method in class org.biomage.Protocol.Protocol_package

Get method for software_list

getSoftware() - Method in interface org.biomage.Interface.HasSoftware

Get method for software

getSoftware() - Method in class org.biomage.Protocol.SoftwareApplication

Get method for software

getSoftwareApplications() - Method in interface org.biomage.Interface.HasSoftwareApplications

Get method for softwareApplications

getSoftwareApplications() - Method in class org.biomage.Protocol.ProtocolApplication

Get method for softwareApplications

getSoftwareManufacturers() - Method in interface org.biomage.Interface.HasSoftwareManufacturers

Get method for softwareManufacturers

getSoftwareManufacturers() - Method in class org.biomage.Protocol.Software

Get method for softwareManufacturers

getSoftwares() - Method in interface org.biomage.Interface.HasSoftwares

Get method for softwares

getSoftwares() - Method in class org.biomage.Protocol.Software

Get method for softwares

getSoftwares() - Method in class org.biomage.Protocol.Protocol

Get method for softwares

getSoftwares() - Method in class org.biomage.Protocol.Hardware

Get method for softwares

getSourceBioAssays() - Method in class org.biomage.BioAssayData.BioAssayMap

Get method for sourceBioAssays

getSourceBioAssays() - Method in interface org.biomage.Interface.HasSourceBioAssays

Get method for sourceBioAssays

getSourceBioMaterialMeasurements() - Method in class org.biomage.BioAssay.BioAssayCreation

Get method for sourceBioMaterialMeasurements

getSourceBioMaterialMeasurements() - Method in class org.biomage.BioMaterial.Treatment

Get method for sourceBioMaterialMeasurements

getSourceBioMaterialMeasurements() - Method in interface org.biomage.Interface.HasSourceBioMaterialMeasurements

Get method for sourceBioMaterialMeasurements

getSourceContact() - Method in class org.biomage.BioMaterial.BioSource

Get method for sourceContact

getSourceContact() - Method in interface org.biomage.Interface.HasSourceContact

Get method for sourceContact

getSourcesQuantitationType() - Method in class org.biomage.BioAssayData.QuantitationTypeMap

Get method for sourcesQuantitationType

getSourcesQuantitationType() - Method in interface org.biomage.Interface.HasSourcesQuantitationType

Get method for sourcesQuantitationType

getSpacingBetweenCols() - Method in class org.biomage.ArrayDesign.ZoneLayout

Get method for spacingBetweenCols

getSpacingBetweenRows() - Method in class org.biomage.ArrayDesign.ZoneLayout

Get method for spacingBetweenRows

getSpacingsBetweenZonesX() - Method in class org.biomage.ArrayDesign.ZoneGroup

Get method for spacingsBetweenZonesX

getSpacingsBetweenZonesY() - Method in class org.biomage.ArrayDesign.ZoneGroup

Get method for spacingsBetweenZonesY

getSpecies() - Method in class org.biomage.ArrayDesign.DesignElementGroup

Get method for species

getSpecies() - Method in class org.biomage.BioSequence.BioSequence

Get method for species

getSpecies() - Method in interface org.biomage.Interface.HasSpecies

Get method for species

getStart() - Method in class org.biomage.BioSequence.SequencePosition

Get method for start

getStartCoord() - Method in class org.biomage.DesignElement.MismatchInformation

Get method for startCoord

getStrandType() - Method in class org.biomage.BioSequence.SeqFeatureLocation

Get method for strandType

getSubregions() - Method in class org.biomage.BioSequence.SeqFeatureLocation

Get method for subregions

getSubregions() - Method in interface org.biomage.Interface.HasSubregions

Get method for subregions

getSubstrateType() - Method in class org.biomage.Array.ArrayGroup

Get method for substrateType

getSubstrateType() - Method in interface org.biomage.Interface.HasSubstrateType

Get method for substrateType

getSummaryStatistics() - Method in class org.biomage.BioAssayData.BioAssayData

Get method for summaryStatistics

getSummaryStatistics() - Method in interface org.biomage.Interface.HasSummaryStatistics

Get method for summaryStatistics

getSurfaceType() - Method in class org.biomage.ArrayDesign.PhysicalArrayDesign

Get method for surfaceType

getSurfaceType() - Method in interface org.biomage.Interface.HasSurfaceType

Get method for surfaceType

getTarget() - Method in class org.biomage.BioAssay.BioAssayTreatment

Get method for target

getTarget() - Method in interface org.biomage.Interface.HasTarget

Get method for target

getTargetQuantitationType() - Method in class org.biomage.BioAssayData.QuantitationTypeMap

Get method for targetQuantitationType

getTargetQuantitationType() - Method in interface org.biomage.Interface.HasTargetQuantitationType

Get method for targetQuantitationType

getTargetQuantitationType() - Method in class org.biomage.QuantitationType.ConfidenceIndicator

Get method for targetQuantitationType

getTechnologyType() - Method in class org.biomage.ArrayDesign.FeatureGroup

Get method for technologyType

getTechnologyType() - Method in interface org.biomage.Interface.HasTechnologyType

Get method for technologyType

getText() - Method in class org.biomage.Description.Description

Get method for text

getText() - Method in class org.biomage.Protocol.Protocol

Get method for text

getThisMaxCard() - Method in class org.biomage.tools.generate_er.AssociationColumn

Description: return the minimum cardinality of this class for the association relationship

getThisMinCard() - Method in class org.biomage.tools.generate_er.AssociationColumn

Description: return the maximum cardinality of this class for the association relationship

getThisNav() - Method in class org.biomage.tools.generate_er.AssociationColumn

Description: return the maximum cardinality of this class for the association relationship

getTitle() - Method in class org.biomage.BQS.BibliographicReference

Get method for title

getTitle() - Method in class org.biomage.Protocol.Protocol

Get method for title

getTolerance() - Method in class org.biomage.Array.ArrayManufacture

Get method for tolerance

getTollFreePhone() - Method in class org.biomage.AuditAndSecurity.Contact

Get method for tollFreePhone

getTopLevelBioAssays() - Method in class org.biomage.Experiment.ExperimentDesign

Get method for topLevelBioAssays

getTopLevelBioAssays() - Method in interface org.biomage.Interface.HasTopLevelBioAssays

Get method for topLevelBioAssays

getTreatments() - Method in class org.biomage.BioMaterial.BioMaterial

Get method for treatments

getTreatments() - Method in interface org.biomage.Interface.HasTreatments

Get method for treatments

getType() - Method in class org.biomage.BioAssay.DerivedBioAssay

Get method for type

getType() - Method in class org.biomage.BioMaterial.BioSample

Get method for type

getType() - Method in class org.biomage.BioSequence.BioSequence

Get method for type

getType() - Method in class org.biomage.Common.NameValueType

Get method for type

getType() - Method in class org.biomage.Description.DatabaseEntry

Get method for type

getType() - Method in class org.biomage.HigherLevelAnalysis.NodeValue

Get method for type

getType() - Method in interface org.biomage.Interface.HasType

Get method for type

getType() - Method in class org.biomage.Measurement.Measurement

Get method for type

getType() - Method in class org.biomage.Protocol.Software

Get method for type

getType() - Method in class org.biomage.Protocol.Protocol

Get method for type

getType() - Method in class org.biomage.Protocol.Hardware

Get method for type

getType() - Method in class org.biomage.tools.generate_er.DataColumn

Description: get the type of the column

getType() - Method in class org.biomage.tools.generate_er.Table

Description: get teh type of the table

getTypes() - Method in class org.biomage.ArrayDesign.DesignElementGroup

Get method for types

getTypes() - Method in class org.biomage.Experiment.ExperimentDesign

Get method for types

getTypes() - Method in interface org.biomage.Interface.HasTypes

Get method for types

getUnique() - Method in class org.biomage.tools.generate_er.Table

Description: get the Unique column for the table

getUniqueVector() - Method in class org.biomage.tools.generate_er.Unique

Description: get the vector holding all columns for Unique

getUnit() - Method in interface org.biomage.Interface.HasUnit

Get method for unit

getUnit() - Method in class org.biomage.Measurement.Measurement

Get method for unit

getUnit() - Method in class org.biomage.Protocol.Parameter

Get method for unit

getUnitName() - Method in class org.biomage.Measurement.Unit

Get method for unitName

getUnitNameCV() - Method in class org.biomage.Measurement.VolumeUnit

Get method for unitNameCV

getUnitNameCV() - Method in class org.biomage.Measurement.TimeUnit

Get method for unitNameCV

getUnitNameCV() - Method in class org.biomage.Measurement.TemperatureUnit

Get method for unitNameCV

getUnitNameCV() - Method in class org.biomage.Measurement.QuantityUnit

Get method for unitNameCV

getUnitNameCV() - Method in class org.biomage.Measurement.MassUnit

Get method for unitNameCV

getUnitNameCV() - Method in class org.biomage.Measurement.DistanceUnit

Get method for unitNameCV

getUnitNameCV() - Method in class org.biomage.Measurement.ConcentrationUnit

Get method for unitNameCV

getUpperLeftX() - Method in class org.biomage.ArrayDesign.Zone

Get method for upperLeftX

getUpperLeftY() - Method in class org.biomage.ArrayDesign.Zone

Get method for upperLeftY

getURI() - Method in class org.biomage.AuditAndSecurity.Contact

Get method for URI

getURI() - Method in class org.biomage.BQS.BibliographicReference

Get method for URI

getURI() - Method in class org.biomage.BioAssay.Image

Get method for URI

getURI() - Method in class org.biomage.Description.DatabaseEntry

Get method for URI

getURI() - Method in class org.biomage.Description.Database

Get method for URI

getURI() - Method in class org.biomage.Protocol.Parameterizable

Get method for URI

getValue() - Method in class org.biomage.Array.ArrayGroup.OrientationMarkPosition

getValue() - Method in class org.biomage.AuditAndSecurity.Audit.Action

getValue() - Method in class org.biomage.BioAssayData.BioDataCube.Order

getValue() - Method in class org.biomage.BioAssayData.BioAssayDatum

Get method for value

getValue() - Method in class org.biomage.BioSequence.SeqFeature.Basis

getValue() - Method in class org.biomage.Common.NameValueType

Get method for value

getValue() - Method in class org.biomage.Description.OntologyEntry

Get method for value

getValue() - Method in class org.biomage.HigherLevelAnalysis.NodeValue

Get method for value

getValue() - Method in class org.biomage.Measurement.VolumeUnit.UnitNameCV

getValue() - Method in class org.biomage.Measurement.TimeUnit.UnitNameCV

getValue() - Method in class org.biomage.Measurement.TemperatureUnit.UnitNameCV

getValue() - Method in class org.biomage.Measurement.QuantityUnit.UnitNameCV

getValue() - Method in class org.biomage.Measurement.Measurement

Get method for value

getValue() - Method in class org.biomage.Measurement.Measurement.Type

getValue() - Method in class org.biomage.Measurement.Measurement.KindCV

getValue() - Method in class org.biomage.Measurement.MassUnit.UnitNameCV

getValue() - Method in class org.biomage.Measurement.DistanceUnit.UnitNameCV

getValue() - Method in class org.biomage.Measurement.ConcentrationUnit.UnitNameCV

getValue() - Method in class org.biomage.Protocol.ParameterValue

Get method for value

getValueAction() - Method in class org.biomage.AuditAndSecurity.Audit

Return the currrent value of the Enumeration type of Action.

getValueBasis() - Method in class org.biomage.BioSequence.SeqFeature

Return the currrent value of the Enumeration type of Basis.

getValueByName(String) - Method in class org.biomage.Array.ArrayGroup.OrientationMarkPosition

getValueByName(String) - Method in class org.biomage.AuditAndSecurity.Audit.Action

getValueByName(String) - Method in class org.biomage.BioAssayData.BioDataCube.Order

getValueByName(String) - Method in class org.biomage.BioSequence.SeqFeature.Basis

getValueByName(String) - Method in class org.biomage.Measurement.VolumeUnit.UnitNameCV

getValueByName(String) - Method in class org.biomage.Measurement.TimeUnit.UnitNameCV

getValueByName(String) - Method in class org.biomage.Measurement.TemperatureUnit.UnitNameCV

getValueByName(String) - Method in class org.biomage.Measurement.QuantityUnit.UnitNameCV

getValueByName(String) - Method in class org.biomage.Measurement.Measurement.Type

getValueByName(String) - Method in class org.biomage.Measurement.Measurement.KindCV

getValueByName(String) - Method in class org.biomage.Measurement.MassUnit.UnitNameCV

getValueByName(String) - Method in class org.biomage.Measurement.DistanceUnit.UnitNameCV

getValueByName(String) - Method in class org.biomage.Measurement.ConcentrationUnit.UnitNameCV

getValueByNameAction(String) - Method in class org.biomage.AuditAndSecurity.Audit

For Action get the Value of the Enumeration type by passing a Name to it.

getValueByNameBasis(String) - Method in class org.biomage.BioSequence.SeqFeature

For Basis get the Value of the Enumeration type by passing a Name to it.

getValueByNameKindCV(String) - Method in class org.biomage.Measurement.Measurement

For KindCV get the Value of the Enumeration type by passing a Name to it.

getValueByNameOrder(String) - Method in class org.biomage.BioAssayData.BioDataCube

For Order get the Value of the Enumeration type by passing a Name to it.

getValueByNameOrientationMarkPosition(String) - Method in class org.biomage.Array.ArrayGroup

For OrientationMarkPosition get the Value of the Enumeration type by passing a Name to it.

getValueByNameType(String) - Method in class org.biomage.Measurement.Measurement

For Type get the Value of the Enumeration type by passing a Name to it.

getValueByNameUnitNameCV(String) - Method in class org.biomage.Measurement.VolumeUnit

For UnitNameCV get the Value of the Enumeration type by passing a Name to it.

getValueByNameUnitNameCV(String) - Method in class org.biomage.Measurement.TimeUnit

For UnitNameCV get the Value of the Enumeration type by passing a Name to it.

getValueByNameUnitNameCV(String) - Method in class org.biomage.Measurement.TemperatureUnit

For UnitNameCV get the Value of the Enumeration type by passing a Name to it.

getValueByNameUnitNameCV(String) - Method in class org.biomage.Measurement.QuantityUnit

For UnitNameCV get the Value of the Enumeration type by passing a Name to it.

getValueByNameUnitNameCV(String) - Method in class org.biomage.Measurement.MassUnit

For UnitNameCV get the Value of the Enumeration type by passing a Name to it.

getValueByNameUnitNameCV(String) - Method in class org.biomage.Measurement.DistanceUnit

For UnitNameCV get the Value of the Enumeration type by passing a Name to it.

getValueByNameUnitNameCV(String) - Method in class org.biomage.Measurement.ConcentrationUnit

For UnitNameCV get the Value of the Enumeration type by passing a Name to it.

getValueKindCV() - Method in class org.biomage.Measurement.Measurement

Return the currrent value of the Enumeration type of KindCV.

getValueOrder() - Method in class org.biomage.BioAssayData.BioDataCube

Return the currrent value of the Enumeration type of Order.

getValueOrientationMarkPosition() - Method in class org.biomage.Array.ArrayGroup

Return the currrent value of the Enumeration type of OrientationMarkPosition.

getValueType() - Method in class org.biomage.Measurement.Measurement

Return the currrent value of the Enumeration type of Type.

getValueUnitNameCV() - Method in class org.biomage.Measurement.VolumeUnit

Return the currrent value of the Enumeration type of UnitNameCV.

getValueUnitNameCV() - Method in class org.biomage.Measurement.TimeUnit

Return the currrent value of the Enumeration type of UnitNameCV.

getValueUnitNameCV() - Method in class org.biomage.Measurement.TemperatureUnit

Return the currrent value of the Enumeration type of UnitNameCV.

getValueUnitNameCV() - Method in class org.biomage.Measurement.QuantityUnit

Return the currrent value of the Enumeration type of UnitNameCV.

getValueUnitNameCV() - Method in class org.biomage.Measurement.MassUnit

Return the currrent value of the Enumeration type of UnitNameCV.

getValueUnitNameCV() - Method in class org.biomage.Measurement.DistanceUnit

Return the currrent value of the Enumeration type of UnitNameCV.

getValueUnitNameCV() - Method in class org.biomage.Measurement.ConcentrationUnit

Return the currrent value of the Enumeration type of UnitNameCV.

getVersion() - Method in class org.biomage.ArrayDesign.ArrayDesign

Get method for version

getVersion() - Method in class org.biomage.Description.Database

Get method for version

getVersion() - Method in class org.biomage.Protocol.SoftwareApplication

Get method for version

getVolume() - Method in class org.biomage.BQS.BibliographicReference

Get method for volume

getWarningType() - Method in class org.biomage.DesignElement.Reporter

Get method for warningType

getWarningType() - Method in interface org.biomage.Interface.HasWarningType

Get method for warningType

getWidth() - Method in class org.biomage.Array.ArrayGroup

Get method for width

getWriteGroups() - Method in class org.biomage.AuditAndSecurity.Security

Get method for writeGroups

getWriteGroups() - Method in interface org.biomage.Interface.HasWriteGroups

Get method for writeGroups

getX() - Method in class org.biomage.DesignElement.Position

Get method for x

getY() - Method in class org.biomage.DesignElement.Position

Get method for y

getYear() - Method in class org.biomage.BQS.BibliographicReference

Get method for year

getZone() - Method in class org.biomage.Array.ZoneDefect

Get method for zone

getZone() - Method in class org.biomage.DesignElement.Feature

Get method for zone

getZone() - Method in interface org.biomage.Interface.HasZone

Get method for zone

getZoneGroups() - Method in class org.biomage.ArrayDesign.PhysicalArrayDesign

Get method for zoneGroups

getZoneGroups() - Method in interface org.biomage.Interface.HasZoneGroups

Get method for zoneGroups

getZoneLayout() - Method in class org.biomage.ArrayDesign.ZoneGroup

Get method for zoneLayout

getZoneLayout() - Method in interface org.biomage.Interface.HasZoneLayout

Get method for zoneLayout

getZoneLocations() - Method in class org.biomage.ArrayDesign.ZoneGroup

Get method for zoneLocations

getZoneLocations() - Method in interface org.biomage.Interface.HasZoneLocations

Get method for zoneLocations

getZonesPerX() - Method in class org.biomage.ArrayDesign.ZoneGroup

Get method for zonesPerX

getZonesPerY() - Method in class org.biomage.ArrayDesign.ZoneGroup

Get method for zonesPerY

GRAM_PERCENT - Variable in class org.biomage.Measurement.ConcentrationUnit.UnitNameCV