A B C D E F G H I J K L M N O P Q R S T U V W Y Z

H

H - Variable in class org.biomage.Measurement.TimeUnit.UnitNameCV

HALF_INDENT - Static variable in class org.biomage.tools.generate_er.CreateMageER

one indent: a tab key

hardware - Variable in class org.biomage.Protocol.Software

Associates Hardware and Software together.

hardware - Variable in class org.biomage.Protocol.HardwareApplication

The underlying hardware.

Hardware - class org.biomage.Protocol.Hardware.

Hardware represents the hardware used.

hardware_list - Variable in class org.biomage.Protocol.Protocol_package

Hardware represents the hardware used.

Hardware() - Constructor for class org.biomage.Protocol.Hardware

Default constructor.

Hardware(Attributes) - Constructor for class org.biomage.Protocol.Hardware

Attribute constructor.

HardwareApplication - class org.biomage.Protocol.HardwareApplication.

The use of a piece of hardware with the requisite Parameters and ParameterValues.

HardwareApplication() - Constructor for class org.biomage.Protocol.HardwareApplication

Default constructor.

HardwareApplication(Attributes) - Constructor for class org.biomage.Protocol.HardwareApplication

Attribute constructor.

hardwareApplications - Variable in class org.biomage.Protocol.ProtocolApplication

The use of hardware for the application of the protocol.

hardwareManufacturers - Variable in class org.biomage.Protocol.Hardware

Contact for information on the Hardware.

hardwares - Variable in class org.biomage.Protocol.Protocol

Hardware used by this protocol.

HasAction - interface org.biomage.Interface.HasAction.

HasActionMeasurement - interface org.biomage.Interface.HasActionMeasurement.

HasAdjustments - interface org.biomage.Interface.HasAdjustments.

HasAdjustments.Adjustments_list - class org.biomage.Interface.HasAdjustments.Adjustments_list.

Inner list class for holding multiple entries for attribute adjustments.

HasAdjustments.Adjustments_list() - Constructor for class org.biomage.Interface.HasAdjustments.Adjustments_list

HasAffiliation - interface org.biomage.Interface.HasAffiliation.

HasAnalysisResults - interface org.biomage.Interface.HasAnalysisResults.

HasAnalysisResults.AnalysisResults_list - class org.biomage.Interface.HasAnalysisResults.AnalysisResults_list.

Inner list class for holding multiple entries for attribute analysisResults.

HasAnalysisResults.AnalysisResults_list() - Constructor for class org.biomage.Interface.HasAnalysisResults.AnalysisResults_list

HasAnnotations - interface org.biomage.Interface.HasAnnotations.

HasAnnotations.Annotations_list - class org.biomage.Interface.HasAnnotations.Annotations_list.

Inner list class for holding multiple entries for attribute annotations.

HasAnnotations.Annotations_list() - Constructor for class org.biomage.Interface.HasAnnotations.Annotations_list

HasArray - interface org.biomage.Interface.HasArray.

HasArrayDesign - interface org.biomage.Interface.HasArrayDesign.

HasArrayGroup - interface org.biomage.Interface.HasArrayGroup.

HasArrayManufactureDeviations - interface org.biomage.Interface.HasArrayManufactureDeviations.

HasArrayManufactureDeviations.ArrayManufactureDeviations_list - class org.biomage.Interface.HasArrayManufactureDeviations.ArrayManufactureDeviations_list.

Inner list class for holding multiple entries for attribute arrayManufactureDeviations.

HasArrayManufactureDeviations.ArrayManufactureDeviations_list() - Constructor for class org.biomage.Interface.HasArrayManufactureDeviations.ArrayManufactureDeviations_list

HasArrayManufacturers - interface org.biomage.Interface.HasArrayManufacturers.

HasArrayManufacturers.ArrayManufacturers_list - class org.biomage.Interface.HasArrayManufacturers.ArrayManufacturers_list.

Inner list class for holding multiple entries for attribute arrayManufacturers.

HasArrayManufacturers.ArrayManufacturers_list() - Constructor for class org.biomage.Interface.HasArrayManufacturers.ArrayManufacturers_list

HasArrays - interface org.biomage.Interface.HasArrays.

HasArrays.Arrays_list - class org.biomage.Interface.HasArrays.Arrays_list.

Inner list class for holding multiple entries for attribute arrays.

HasArrays.Arrays_list() - Constructor for class org.biomage.Interface.HasArrays.Arrays_list

HasAuditTrail - interface org.biomage.Interface.HasAuditTrail.

HasAuditTrail.AuditTrail_list - class org.biomage.Interface.HasAuditTrail.AuditTrail_list.

Inner list class for holding multiple entries for attribute auditTrail.

HasAuditTrail.AuditTrail_list() - Constructor for class org.biomage.Interface.HasAuditTrail.AuditTrail_list

HasBibliographicReferences - interface org.biomage.Interface.HasBibliographicReferences.

HasBibliographicReferences.BibliographicReferences_list - class org.biomage.Interface.HasBibliographicReferences.BibliographicReferences_list.

Inner list class for holding multiple entries for attribute bibliographicReferences.

HasBibliographicReferences.BibliographicReferences_list() - Constructor for class org.biomage.Interface.HasBibliographicReferences.BibliographicReferences_list

HasBioAssay - interface org.biomage.Interface.HasBioAssay.

HasBioAssayCreation - interface org.biomage.Interface.HasBioAssayCreation.

HasBioAssayData - interface org.biomage.Interface.HasBioAssayData.

HasBioAssayData.BioAssayData_list - class org.biomage.Interface.HasBioAssayData.BioAssayData_list.

Inner list class for holding multiple entries for attribute bioAssayData.

HasBioAssayData.BioAssayData_list() - Constructor for class org.biomage.Interface.HasBioAssayData.BioAssayData_list

HasBioAssayDataSources - interface org.biomage.Interface.HasBioAssayDataSources.

HasBioAssayDataSources.BioAssayDataSources_list - class org.biomage.Interface.HasBioAssayDataSources.BioAssayDataSources_list.

Inner list class for holding multiple entries for attribute bioAssayDataSources.

HasBioAssayDataSources.BioAssayDataSources_list() - Constructor for class org.biomage.Interface.HasBioAssayDataSources.BioAssayDataSources_list

HasBioAssayDimension - interface org.biomage.Interface.HasBioAssayDimension.

HasBioAssayFactorValues - interface org.biomage.Interface.HasBioAssayFactorValues.

HasBioAssayFactorValues.BioAssayFactorValues_list - class org.biomage.Interface.HasBioAssayFactorValues.BioAssayFactorValues_list.

Inner list class for holding multiple entries for attribute bioAssayFactorValues.

HasBioAssayFactorValues.BioAssayFactorValues_list() - Constructor for class org.biomage.Interface.HasBioAssayFactorValues.BioAssayFactorValues_list

HasBioAssayMapping - interface org.biomage.Interface.HasBioAssayMapping.

HasBioAssayMaps - interface org.biomage.Interface.HasBioAssayMaps.

HasBioAssayMaps.BioAssayMaps_list - class org.biomage.Interface.HasBioAssayMaps.BioAssayMaps_list.

Inner list class for holding multiple entries for attribute bioAssayMaps.

HasBioAssayMaps.BioAssayMaps_list() - Constructor for class org.biomage.Interface.HasBioAssayMaps.BioAssayMaps_list

HasBioAssayMapTarget - interface org.biomage.Interface.HasBioAssayMapTarget.

HasBioAssays - interface org.biomage.Interface.HasBioAssays.

HasBioAssays.BioAssays_list - class org.biomage.Interface.HasBioAssays.BioAssays_list.

Inner list class for holding multiple entries for attribute bioAssays.

HasBioAssays.BioAssays_list() - Constructor for class org.biomage.Interface.HasBioAssays.BioAssays_list

HasBioAssayTreatments - interface org.biomage.Interface.HasBioAssayTreatments.

HasBioAssayTreatments.BioAssayTreatments_list - class org.biomage.Interface.HasBioAssayTreatments.BioAssayTreatments_list.

Inner list class for holding multiple entries for attribute bioAssayTreatments.

HasBioAssayTreatments.BioAssayTreatments_list() - Constructor for class org.biomage.Interface.HasBioAssayTreatments.BioAssayTreatments_list

HasBioAssayTupleData - interface org.biomage.Interface.HasBioAssayTupleData.

HasBioAssayTupleData.BioAssayTupleData_list - class org.biomage.Interface.HasBioAssayTupleData.BioAssayTupleData_list.

Inner list class for holding multiple entries for attribute bioAssayTupleData.

HasBioAssayTupleData.BioAssayTupleData_list() - Constructor for class org.biomage.Interface.HasBioAssayTupleData.BioAssayTupleData_list

HasBioDataValues - interface org.biomage.Interface.HasBioDataValues.

HasBiologicalCharacteristics - interface org.biomage.Interface.HasBiologicalCharacteristics.

HasBiologicalCharacteristics.BiologicalCharacteristics_list - class org.biomage.Interface.HasBiologicalCharacteristics.BiologicalCharacteristics_list.

Inner list class for holding multiple entries for attribute biologicalCharacteristics.

HasBiologicalCharacteristics.BiologicalCharacteristics_list() - Constructor for class org.biomage.Interface.HasBiologicalCharacteristics.BiologicalCharacteristics_list

HasBioMaterial - interface org.biomage.Interface.HasBioMaterial.

HasCategory - interface org.biomage.Interface.HasCategory.

HasChannel - interface org.biomage.Interface.HasChannel.

HasChannels - interface org.biomage.Interface.HasChannels.

HasChannels.Channels_list - class org.biomage.Interface.HasChannels.Channels_list.

Inner list class for holding multiple entries for attribute channels.

HasChannels.Channels_list() - Constructor for class org.biomage.Interface.HasChannels.Channels_list

HasCharacteristics - interface org.biomage.Interface.HasCharacteristics.

HasCharacteristics.Characteristics_list - class org.biomage.Interface.HasCharacteristics.Characteristics_list.

Inner list class for holding multiple entries for attribute characteristics.

HasCharacteristics.Characteristics_list() - Constructor for class org.biomage.Interface.HasCharacteristics.Characteristics_list

HasClusterBioAssayData - interface org.biomage.Interface.HasClusterBioAssayData.

HasComponentCompounds - interface org.biomage.Interface.HasComponentCompounds.

HasComponentCompounds.ComponentCompounds_list - class org.biomage.Interface.HasComponentCompounds.ComponentCompounds_list.

Inner list class for holding multiple entries for attribute componentCompounds.

HasComponentCompounds.ComponentCompounds_list() - Constructor for class org.biomage.Interface.HasComponentCompounds.ComponentCompounds_list

HasComposite - interface org.biomage.Interface.HasComposite.

HasCompositeCompositeMaps - interface org.biomage.Interface.HasCompositeCompositeMaps.

HasCompositeCompositeMaps.CompositeCompositeMaps_list - class org.biomage.Interface.HasCompositeCompositeMaps.CompositeCompositeMaps_list.

Inner list class for holding multiple entries for attribute compositeCompositeMaps.

HasCompositeCompositeMaps.CompositeCompositeMaps_list() - Constructor for class org.biomage.Interface.HasCompositeCompositeMaps.CompositeCompositeMaps_list

HasCompositeGroups - interface org.biomage.Interface.HasCompositeGroups.

HasCompositeGroups.CompositeGroups_list - class org.biomage.Interface.HasCompositeGroups.CompositeGroups_list.

Inner list class for holding multiple entries for attribute compositeGroups.

HasCompositeGroups.CompositeGroups_list() - Constructor for class org.biomage.Interface.HasCompositeGroups.CompositeGroups_list

HasCompositePositionSources - interface org.biomage.Interface.HasCompositePositionSources.

HasCompositePositionSources.CompositePositionSources_list - class org.biomage.Interface.HasCompositePositionSources.CompositePositionSources_list.

Inner list class for holding multiple entries for attribute compositePositionSources.

HasCompositePositionSources.CompositePositionSources_list() - Constructor for class org.biomage.Interface.HasCompositePositionSources.CompositePositionSources_list

HasCompositeSequence - interface org.biomage.Interface.HasCompositeSequence.

HasCompositeSequences - interface org.biomage.Interface.HasCompositeSequences.

HasCompositeSequences.CompositeSequences_list - class org.biomage.Interface.HasCompositeSequences.CompositeSequences_list.

Inner list class for holding multiple entries for attribute compositeSequences.

HasCompositeSequences.CompositeSequences_list() - Constructor for class org.biomage.Interface.HasCompositeSequences.CompositeSequences_list

HasCompound - interface org.biomage.Interface.HasCompound.

HasCompoundMeasurements - interface org.biomage.Interface.HasCompoundMeasurements.

HasCompoundMeasurements.CompoundMeasurements_list - class org.biomage.Interface.HasCompoundMeasurements.CompoundMeasurements_list.

Inner list class for holding multiple entries for attribute compoundMeasurements.

HasCompoundMeasurements.CompoundMeasurements_list() - Constructor for class org.biomage.Interface.HasCompoundMeasurements.CompoundMeasurements_list

HasConfidenceIndicators - interface org.biomage.Interface.HasConfidenceIndicators.

HasConfidenceIndicators.ConfidenceIndicators_list - class org.biomage.Interface.HasConfidenceIndicators.ConfidenceIndicators_list.

Inner list class for holding multiple entries for attribute confidenceIndicators.

HasConfidenceIndicators.ConfidenceIndicators_list() - Constructor for class org.biomage.Interface.HasConfidenceIndicators.ConfidenceIndicators_list

HasContacts - interface org.biomage.Interface.HasContacts.

HasContacts.Contacts_list - class org.biomage.Interface.HasContacts.Contacts_list.

Inner list class for holding multiple entries for attribute contacts.

HasContacts.Contacts_list() - Constructor for class org.biomage.Interface.HasContacts.Contacts_list

HasContainedFeatures - interface org.biomage.Interface.HasContainedFeatures.

HasContainedFeatures.ContainedFeatures_list - class org.biomage.Interface.HasContainedFeatures.ContainedFeatures_list.

Inner list class for holding multiple entries for attribute containedFeatures.

HasContainedFeatures.ContainedFeatures_list() - Constructor for class org.biomage.Interface.HasContainedFeatures.ContainedFeatures_list

HasControlFeatures - interface org.biomage.Interface.HasControlFeatures.

HasControlFeatures.ControlFeatures_list - class org.biomage.Interface.HasControlFeatures.ControlFeatures_list.

Inner list class for holding multiple entries for attribute controlFeatures.

HasControlFeatures.ControlFeatures_list() - Constructor for class org.biomage.Interface.HasControlFeatures.ControlFeatures_list

HasControlledFeatures - interface org.biomage.Interface.HasControlledFeatures.

HasControlledFeatures.ControlledFeatures_list - class org.biomage.Interface.HasControlledFeatures.ControlledFeatures_list.

Inner list class for holding multiple entries for attribute controlledFeatures.

HasControlledFeatures.ControlledFeatures_list() - Constructor for class org.biomage.Interface.HasControlledFeatures.ControlledFeatures_list

HasControlType - interface org.biomage.Interface.HasControlType.

HasCoordinate - interface org.biomage.Interface.HasCoordinate.

HasDatabase - interface org.biomage.Interface.HasDatabase.

HasDatabaseReferences - interface org.biomage.Interface.HasDatabaseReferences.

HasDatabaseReferences.DatabaseReferences_list - class org.biomage.Interface.HasDatabaseReferences.DatabaseReferences_list.

Inner list class for holding multiple entries for attribute databaseReferences.

HasDatabaseReferences.DatabaseReferences_list() - Constructor for class org.biomage.Interface.HasDatabaseReferences.DatabaseReferences_list

HasDataType - interface org.biomage.Interface.HasDataType.

HasDefectType - interface org.biomage.Interface.HasDefectType.

HasDerivedBioAssayData - interface org.biomage.Interface.HasDerivedBioAssayData.

HasDerivedBioAssayData.DerivedBioAssayData_list - class org.biomage.Interface.HasDerivedBioAssayData.DerivedBioAssayData_list.

Inner list class for holding multiple entries for attribute derivedBioAssayData.

HasDerivedBioAssayData.DerivedBioAssayData_list() - Constructor for class org.biomage.Interface.HasDerivedBioAssayData.DerivedBioAssayData_list

HasDerivedBioAssayDataTarget - interface org.biomage.Interface.HasDerivedBioAssayDataTarget.

HasDescriptions - interface org.biomage.Interface.HasDescriptions.

HasDescriptions.Descriptions_list - class org.biomage.Interface.HasDescriptions.Descriptions_list.

Inner list class for holding multiple entries for attribute descriptions.

HasDescriptions.Descriptions_list() - Constructor for class org.biomage.Interface.HasDescriptions.Descriptions_list

HasDesignElement - interface org.biomage.Interface.HasDesignElement.

HasDesignElementDimension - interface org.biomage.Interface.HasDesignElementDimension.

HasDesignElementMapping - interface org.biomage.Interface.HasDesignElementMapping.

HasDesignElementMaps - interface org.biomage.Interface.HasDesignElementMaps.

HasDesignElementMaps.DesignElementMaps_list - class org.biomage.Interface.HasDesignElementMaps.DesignElementMaps_list.

Inner list class for holding multiple entries for attribute designElementMaps.

HasDesignElementMaps.DesignElementMaps_list() - Constructor for class org.biomage.Interface.HasDesignElementMaps.DesignElementMaps_list

HasDesignProviders - interface org.biomage.Interface.HasDesignProviders.

HasDesignProviders.DesignProviders_list - class org.biomage.Interface.HasDesignProviders.DesignProviders_list.

Inner list class for holding multiple entries for attribute designProviders.

HasDesignProviders.DesignProviders_list() - Constructor for class org.biomage.Interface.HasDesignProviders.DesignProviders_list

HasDistanceUnit - interface org.biomage.Interface.HasDistanceUnit.

HasExperimentalFactor - interface org.biomage.Interface.HasExperimentalFactor.

HasExperimentalFactors - interface org.biomage.Interface.HasExperimentalFactors.

HasExperimentalFactors.ExperimentalFactors_list - class org.biomage.Interface.HasExperimentalFactors.ExperimentalFactors_list.

Inner list class for holding multiple entries for attribute experimentalFactors.

HasExperimentalFactors.ExperimentalFactors_list() - Constructor for class org.biomage.Interface.HasExperimentalFactors.ExperimentalFactors_list

HasExperimentDesign - interface org.biomage.Interface.HasExperimentDesign.

HasExternalReference - interface org.biomage.Interface.HasExternalReference.

HasFactorValues - interface org.biomage.Interface.HasFactorValues.

HasFactorValues.FactorValues_list - class org.biomage.Interface.HasFactorValues.FactorValues_list.

Inner list class for holding multiple entries for attribute factorValues.

HasFactorValues.FactorValues_list() - Constructor for class org.biomage.Interface.HasFactorValues.FactorValues_list

HasFailTypes - interface org.biomage.Interface.HasFailTypes.

HasFailTypes.FailTypes_list - class org.biomage.Interface.HasFailTypes.FailTypes_list.

Inner list class for holding multiple entries for attribute failTypes.

HasFailTypes.FailTypes_list() - Constructor for class org.biomage.Interface.HasFailTypes.FailTypes_list

HasFeature - interface org.biomage.Interface.HasFeature.

HasFeatureDefects - interface org.biomage.Interface.HasFeatureDefects.

HasFeatureDefects.FeatureDefects_list - class org.biomage.Interface.HasFeatureDefects.FeatureDefects_list.

Inner list class for holding multiple entries for attribute featureDefects.

HasFeatureDefects.FeatureDefects_list() - Constructor for class org.biomage.Interface.HasFeatureDefects.FeatureDefects_list

HasFeatureExtraction - interface org.biomage.Interface.HasFeatureExtraction.

HasFeatureGroup - interface org.biomage.Interface.HasFeatureGroup.

HasFeatureGroups - interface org.biomage.Interface.HasFeatureGroups.

HasFeatureGroups.FeatureGroups_list - class org.biomage.Interface.HasFeatureGroups.FeatureGroups_list.

Inner list class for holding multiple entries for attribute featureGroups.

HasFeatureGroups.FeatureGroups_list() - Constructor for class org.biomage.Interface.HasFeatureGroups.FeatureGroups_list

HasFeatureInformationSources - interface org.biomage.Interface.HasFeatureInformationSources.

HasFeatureInformationSources.FeatureInformationSources_list - class org.biomage.Interface.HasFeatureInformationSources.FeatureInformationSources_list.

Inner list class for holding multiple entries for attribute featureInformationSources.

HasFeatureInformationSources.FeatureInformationSources_list() - Constructor for class org.biomage.Interface.HasFeatureInformationSources.FeatureInformationSources_list

HasFeatureLIMSs - interface org.biomage.Interface.HasFeatureLIMSs.

HasFeatureLIMSs.FeatureLIMSs_list - class org.biomage.Interface.HasFeatureLIMSs.FeatureLIMSs_list.

Inner list class for holding multiple entries for attribute featureLIMSs.

HasFeatureLIMSs.FeatureLIMSs_list() - Constructor for class org.biomage.Interface.HasFeatureLIMSs.FeatureLIMSs_list

HasFeatureLocation - interface org.biomage.Interface.HasFeatureLocation.

HasFeatureReporterMaps - interface org.biomage.Interface.HasFeatureReporterMaps.

HasFeatureReporterMaps.FeatureReporterMaps_list - class org.biomage.Interface.HasFeatureReporterMaps.FeatureReporterMaps_list.

Inner list class for holding multiple entries for attribute featureReporterMaps.

HasFeatureReporterMaps.FeatureReporterMaps_list() - Constructor for class org.biomage.Interface.HasFeatureReporterMaps.FeatureReporterMaps_list

HasFeatures - interface org.biomage.Interface.HasFeatures.

HasFeatures.Features_list - class org.biomage.Interface.HasFeatures.Features_list.

Inner list class for holding multiple entries for attribute features.

HasFeatures.Features_list() - Constructor for class org.biomage.Interface.HasFeatures.Features_list

HasFeatureShape - interface org.biomage.Interface.HasFeatureShape.

HasFiducials - interface org.biomage.Interface.HasFiducials.

HasFiducials.Fiducials_list - class org.biomage.Interface.HasFiducials.Fiducials_list.

Inner list class for holding multiple entries for attribute fiducials.

HasFiducials.Fiducials_list() - Constructor for class org.biomage.Interface.HasFiducials.Fiducials_list

HasFiducialType - interface org.biomage.Interface.HasFiducialType.

HasFormat - interface org.biomage.Interface.HasFormat.

HasHardware - interface org.biomage.Interface.HasHardware.

HasHardwareApplications - interface org.biomage.Interface.HasHardwareApplications.

HasHardwareApplications.HardwareApplications_list - class org.biomage.Interface.HasHardwareApplications.HardwareApplications_list.

Inner list class for holding multiple entries for attribute hardwareApplications.

HasHardwareApplications.HardwareApplications_list() - Constructor for class org.biomage.Interface.HasHardwareApplications.HardwareApplications_list

HasHardwareManufacturers - interface org.biomage.Interface.HasHardwareManufacturers.

HasHardwareManufacturers.HardwareManufacturers_list - class org.biomage.Interface.HasHardwareManufacturers.HardwareManufacturers_list.

Inner list class for holding multiple entries for attribute hardwareManufacturers.

HasHardwareManufacturers.HardwareManufacturers_list() - Constructor for class org.biomage.Interface.HasHardwareManufacturers.HardwareManufacturers_list

HasHardwares - interface org.biomage.Interface.HasHardwares.

HasHardwares.Hardwares_list - class org.biomage.Interface.HasHardwares.Hardwares_list.

Inner list class for holding multiple entries for attribute hardwares.

HasHardwares.Hardwares_list() - Constructor for class org.biomage.Interface.HasHardwares.Hardwares_list

HasIdentifierLIMS - interface org.biomage.Interface.HasIdentifierLIMS.

HasImages - interface org.biomage.Interface.HasImages.

HasImages.Images_list - class org.biomage.Interface.HasImages.Images_list.

Inner list class for holding multiple entries for attribute images.

HasImages.Images_list() - Constructor for class org.biomage.Interface.HasImages.Images_list

HasImmobilizedCharacteristics - interface org.biomage.Interface.HasImmobilizedCharacteristics.

HasImmobilizedCharacteristics.ImmobilizedCharacteristics_list - class org.biomage.Interface.HasImmobilizedCharacteristics.ImmobilizedCharacteristics_list.

Inner list class for holding multiple entries for attribute immobilizedCharacteristics.

HasImmobilizedCharacteristics.ImmobilizedCharacteristics_list() - Constructor for class org.biomage.Interface.HasImmobilizedCharacteristics.ImmobilizedCharacteristics_list

HasInformation - interface org.biomage.Interface.HasInformation.

HasLabels - interface org.biomage.Interface.HasLabels.

HasLabels.Labels_list - class org.biomage.Interface.HasLabels.Labels_list.

Inner list class for holding multiple entries for attribute labels.

HasLabels.Labels_list() - Constructor for class org.biomage.Interface.HasLabels.Labels_list

HasMaterialType - interface org.biomage.Interface.HasMaterialType.

HasMeasuredBioAssayData - interface org.biomage.Interface.HasMeasuredBioAssayData.

HasMeasuredBioAssayData.MeasuredBioAssayData_list - class org.biomage.Interface.HasMeasuredBioAssayData.MeasuredBioAssayData_list.

Inner list class for holding multiple entries for attribute measuredBioAssayData.

HasMeasuredBioAssayData.MeasuredBioAssayData_list() - Constructor for class org.biomage.Interface.HasMeasuredBioAssayData.MeasuredBioAssayData_list

HasMeasuredBioAssayTarget - interface org.biomage.Interface.HasMeasuredBioAssayTarget.

HasMeasurement - interface org.biomage.Interface.HasMeasurement.

HasMembers - interface org.biomage.Interface.HasMembers.

HasMembers.Members_list - class org.biomage.Interface.HasMembers.Members_list.

Inner list class for holding multiple entries for attribute members.

HasMembers.Members_list() - Constructor for class org.biomage.Interface.HasMembers.Members_list

HasMerckIndex - interface org.biomage.Interface.HasMerckIndex.

HasMismatchInformation - interface org.biomage.Interface.HasMismatchInformation.

HasMismatchInformation.MismatchInformation_list - class org.biomage.Interface.HasMismatchInformation.MismatchInformation_list.

Inner list class for holding multiple entries for attribute mismatchInformation.

HasMismatchInformation.MismatchInformation_list() - Constructor for class org.biomage.Interface.HasMismatchInformation.MismatchInformation_list

HasNodeContents - interface org.biomage.Interface.HasNodeContents.

HasNodeContents.NodeContents_list - class org.biomage.Interface.HasNodeContents.NodeContents_list.

Inner list class for holding multiple entries for attribute nodeContents.

HasNodeContents.NodeContents_list() - Constructor for class org.biomage.Interface.HasNodeContents.NodeContents_list

HasNodes - interface org.biomage.Interface.HasNodes.

HasNodes.Nodes_list - class org.biomage.Interface.HasNodes.Nodes_list.

Inner list class for holding multiple entries for attribute nodes.

HasNodes.Nodes_list() - Constructor for class org.biomage.Interface.HasNodes.Nodes_list

HasNodeValue - interface org.biomage.Interface.HasNodeValue.

HasNodeValue.NodeValue_list - class org.biomage.Interface.HasNodeValue.NodeValue_list.

Inner list class for holding multiple entries for attribute nodeValue.

HasNodeValue.NodeValue_list() - Constructor for class org.biomage.Interface.HasNodeValue.NodeValue_list

HasNormalizationDescription - interface org.biomage.Interface.HasNormalizationDescription.

HasOntologyEntries - interface org.biomage.Interface.HasOntologyEntries.

HasOntologyEntries.OntologyEntries_list - class org.biomage.Interface.HasOntologyEntries.OntologyEntries_list.

Inner list class for holding multiple entries for attribute ontologyEntries.

HasOntologyEntries.OntologyEntries_list() - Constructor for class org.biomage.Interface.HasOntologyEntries.OntologyEntries_list

HasOntologyReference - interface org.biomage.Interface.HasOntologyReference.

HasOwner - interface org.biomage.Interface.HasOwner.

HasParameters - interface org.biomage.Interface.HasParameters.

HasParameters.Parameters_list - class org.biomage.Interface.HasParameters.Parameters_list.

Inner list class for holding multiple entries for attribute parameters.

HasParameters.Parameters_list() - Constructor for class org.biomage.Interface.HasParameters.Parameters_list

HasParameterType - interface org.biomage.Interface.HasParameterType.

HasParameterTypes - interface org.biomage.Interface.HasParameterTypes.

HasParameterTypes.ParameterTypes_list - class org.biomage.Interface.HasParameterTypes.ParameterTypes_list.

Inner list class for holding multiple entries for attribute parameterTypes.

HasParameterTypes.ParameterTypes_list() - Constructor for class org.biomage.Interface.HasParameterTypes.ParameterTypes_list

HasParameterValues - interface org.biomage.Interface.HasParameterValues.

HasParameterValues.ParameterValues_list - class org.biomage.Interface.HasParameterValues.ParameterValues_list.

Inner list class for holding multiple entries for attribute parameterValues.

HasParameterValues.ParameterValues_list() - Constructor for class org.biomage.Interface.HasParameterValues.ParameterValues_list

HasParent - interface org.biomage.Interface.HasParent.

HasPerformer - interface org.biomage.Interface.HasPerformer.

HasPerformers - interface org.biomage.Interface.HasPerformers.

HasPerformers.Performers_list - class org.biomage.Interface.HasPerformers.Performers_list.

Inner list class for holding multiple entries for attribute performers.

HasPerformers.Performers_list() - Constructor for class org.biomage.Interface.HasPerformers.Performers_list

HasPhysicalBioAssay - interface org.biomage.Interface.HasPhysicalBioAssay.

HasPhysicalBioAssayData - interface org.biomage.Interface.HasPhysicalBioAssayData.

HasPhysicalBioAssayData.PhysicalBioAssayData_list - class org.biomage.Interface.HasPhysicalBioAssayData.PhysicalBioAssayData_list.

Inner list class for holding multiple entries for attribute physicalBioAssayData.

HasPhysicalBioAssayData.PhysicalBioAssayData_list() - Constructor for class org.biomage.Interface.HasPhysicalBioAssayData.PhysicalBioAssayData_list

HasPhysicalBioAssaySource - interface org.biomage.Interface.HasPhysicalBioAssaySource.

HasPhysicalBioAssayTarget - interface org.biomage.Interface.HasPhysicalBioAssayTarget.

HasPolymerType - interface org.biomage.Interface.HasPolymerType.

HasPosition - interface org.biomage.Interface.HasPosition.

HasPositionDelta - interface org.biomage.Interface.HasPositionDelta.

HasProducerTransformation - interface org.biomage.Interface.HasProducerTransformation.

HasPropertySets - interface org.biomage.Interface.HasPropertySets.

HasPropertySets.PropertySets_list - class org.biomage.Interface.HasPropertySets.PropertySets_list.

Inner list class for holding multiple entries for attribute propertySets.

HasPropertySets.PropertySets_list() - Constructor for class org.biomage.Interface.HasPropertySets.PropertySets_list

HasProtocol - interface org.biomage.Interface.HasProtocol.

HasProtocolApplications - interface org.biomage.Interface.HasProtocolApplications.

HasProtocolApplications.ProtocolApplications_list - class org.biomage.Interface.HasProtocolApplications.ProtocolApplications_list.

Inner list class for holding multiple entries for attribute protocolApplications.

HasProtocolApplications.ProtocolApplications_list() - Constructor for class org.biomage.Interface.HasProtocolApplications.ProtocolApplications_list

HasProviders - interface org.biomage.Interface.HasProviders.

HasProviders.Providers_list - class org.biomage.Interface.HasProviders.Providers_list.

Inner list class for holding multiple entries for attribute providers.

HasProviders.Providers_list() - Constructor for class org.biomage.Interface.HasProviders.Providers_list

HasQualityControlDescription - interface org.biomage.Interface.HasQualityControlDescription.

HasQualityControlStatistics - interface org.biomage.Interface.HasQualityControlStatistics.

HasQualityControlStatistics.QualityControlStatistics_list - class org.biomage.Interface.HasQualityControlStatistics.QualityControlStatistics_list.

Inner list class for holding multiple entries for attribute qualityControlStatistics.

HasQualityControlStatistics.QualityControlStatistics_list() - Constructor for class org.biomage.Interface.HasQualityControlStatistics.QualityControlStatistics_list

HasQuantitationDimension - interface org.biomage.Interface.HasQuantitationDimension.

HasQuantitationType - interface org.biomage.Interface.HasQuantitationType.

HasQuantitationTypeDimension - interface org.biomage.Interface.HasQuantitationTypeDimension.

HasQuantitationTypeMapping - interface org.biomage.Interface.HasQuantitationTypeMapping.

HasQuantitationTypeMaps - interface org.biomage.Interface.HasQuantitationTypeMaps.

HasQuantitationTypeMaps.QuantitationTypeMaps_list - class org.biomage.Interface.HasQuantitationTypeMaps.QuantitationTypeMaps_list.

Inner list class for holding multiple entries for attribute quantitationTypeMaps.

HasQuantitationTypeMaps.QuantitationTypeMaps_list() - Constructor for class org.biomage.Interface.HasQuantitationTypeMaps.QuantitationTypeMaps_list

HasQuantitationTypes - interface org.biomage.Interface.HasQuantitationTypes.

HasQuantitationTypes.QuantitationTypes_list - class org.biomage.Interface.HasQuantitationTypes.QuantitationTypes_list.

Inner list class for holding multiple entries for attribute quantitationTypes.

HasQuantitationTypes.QuantitationTypes_list() - Constructor for class org.biomage.Interface.HasQuantitationTypes.QuantitationTypes_list

HasReadGroups - interface org.biomage.Interface.HasReadGroups.

HasReadGroups.ReadGroups_list - class org.biomage.Interface.HasReadGroups.ReadGroups_list.

Inner list class for holding multiple entries for attribute readGroups.

HasReadGroups.ReadGroups_list() - Constructor for class org.biomage.Interface.HasReadGroups.ReadGroups_list

HasRegions - interface org.biomage.Interface.HasRegions.

HasRegions.Regions_list - class org.biomage.Interface.HasRegions.Regions_list.

Inner list class for holding multiple entries for attribute regions.

HasRegions.Regions_list() - Constructor for class org.biomage.Interface.HasRegions.Regions_list

HasReplicateDescription - interface org.biomage.Interface.HasReplicateDescription.

HasReporter - interface org.biomage.Interface.HasReporter.

HasReporterCompositeMaps - interface org.biomage.Interface.HasReporterCompositeMaps.

HasReporterCompositeMaps.ReporterCompositeMaps_list - class org.biomage.Interface.HasReporterCompositeMaps.ReporterCompositeMaps_list.

Inner list class for holding multiple entries for attribute reporterCompositeMaps.

HasReporterCompositeMaps.ReporterCompositeMaps_list() - Constructor for class org.biomage.Interface.HasReporterCompositeMaps.ReporterCompositeMaps_list

HasReporterGroups - interface org.biomage.Interface.HasReporterGroups.

HasReporterGroups.ReporterGroups_list - class org.biomage.Interface.HasReporterGroups.ReporterGroups_list.

Inner list class for holding multiple entries for attribute reporterGroups.

HasReporterGroups.ReporterGroups_list() - Constructor for class org.biomage.Interface.HasReporterGroups.ReporterGroups_list

HasReporterPositionSources - interface org.biomage.Interface.HasReporterPositionSources.

HasReporterPositionSources.ReporterPositionSources_list - class org.biomage.Interface.HasReporterPositionSources.ReporterPositionSources_list.

Inner list class for holding multiple entries for attribute reporterPositionSources.

HasReporterPositionSources.ReporterPositionSources_list() - Constructor for class org.biomage.Interface.HasReporterPositionSources.ReporterPositionSources_list

HasReporters - interface org.biomage.Interface.HasReporters.

HasReporters.Reporters_list - class org.biomage.Interface.HasReporters.Reporters_list.

Inner list class for holding multiple entries for attribute reporters.

HasReporters.Reporters_list() - Constructor for class org.biomage.Interface.HasReporters.Reporters_list

HasRoles - interface org.biomage.Interface.HasRoles.

HasRoles.Roles_list - class org.biomage.Interface.HasRoles.Roles_list.

Inner list class for holding multiple entries for attribute roles.

HasRoles.Roles_list() - Constructor for class org.biomage.Interface.HasRoles.Roles_list

HasScale - interface org.biomage.Interface.HasScale.

HasSecurity - interface org.biomage.Interface.HasSecurity.

HasSeqFeatures - interface org.biomage.Interface.HasSeqFeatures.

HasSeqFeatures.SeqFeatures_list - class org.biomage.Interface.HasSeqFeatures.SeqFeatures_list.

Inner list class for holding multiple entries for attribute seqFeatures.

HasSeqFeatures.SeqFeatures_list() - Constructor for class org.biomage.Interface.HasSeqFeatures.SeqFeatures_list

HasSequenceDatabases - interface org.biomage.Interface.HasSequenceDatabases.

HasSequenceDatabases.SequenceDatabases_list - class org.biomage.Interface.HasSequenceDatabases.SequenceDatabases_list.

Inner list class for holding multiple entries for attribute sequenceDatabases.

HasSequenceDatabases.SequenceDatabases_list() - Constructor for class org.biomage.Interface.HasSequenceDatabases.SequenceDatabases_list

HasSoftware - interface org.biomage.Interface.HasSoftware.

HasSoftwareApplications - interface org.biomage.Interface.HasSoftwareApplications.

HasSoftwareApplications.SoftwareApplications_list - class org.biomage.Interface.HasSoftwareApplications.SoftwareApplications_list.

Inner list class for holding multiple entries for attribute softwareApplications.

HasSoftwareApplications.SoftwareApplications_list() - Constructor for class org.biomage.Interface.HasSoftwareApplications.SoftwareApplications_list

HasSoftwareManufacturers - interface org.biomage.Interface.HasSoftwareManufacturers.

HasSoftwareManufacturers.SoftwareManufacturers_list - class org.biomage.Interface.HasSoftwareManufacturers.SoftwareManufacturers_list.

Inner list class for holding multiple entries for attribute softwareManufacturers.

HasSoftwareManufacturers.SoftwareManufacturers_list() - Constructor for class org.biomage.Interface.HasSoftwareManufacturers.SoftwareManufacturers_list

HasSoftwares - interface org.biomage.Interface.HasSoftwares.

HasSoftwares.Softwares_list - class org.biomage.Interface.HasSoftwares.Softwares_list.

Inner list class for holding multiple entries for attribute softwares.

HasSoftwares.Softwares_list() - Constructor for class org.biomage.Interface.HasSoftwares.Softwares_list

HasSourceBioAssays - interface org.biomage.Interface.HasSourceBioAssays.

HasSourceBioAssays.SourceBioAssays_list - class org.biomage.Interface.HasSourceBioAssays.SourceBioAssays_list.

Inner list class for holding multiple entries for attribute sourceBioAssays.

HasSourceBioAssays.SourceBioAssays_list() - Constructor for class org.biomage.Interface.HasSourceBioAssays.SourceBioAssays_list

HasSourceBioMaterialMeasurements - interface org.biomage.Interface.HasSourceBioMaterialMeasurements.

HasSourceBioMaterialMeasurements.SourceBioMaterialMeasurements_list - class org.biomage.Interface.HasSourceBioMaterialMeasurements.SourceBioMaterialMeasurements_list.

Inner list class for holding multiple entries for attribute sourceBioMaterialMeasurements.

HasSourceBioMaterialMeasurements.SourceBioMaterialMeasurements_list() - Constructor for class org.biomage.Interface.HasSourceBioMaterialMeasurements.SourceBioMaterialMeasurements_list

HasSourceContact - interface org.biomage.Interface.HasSourceContact.

HasSourcesQuantitationType - interface org.biomage.Interface.HasSourcesQuantitationType.

HasSourcesQuantitationType.SourcesQuantitationType_list - class org.biomage.Interface.HasSourcesQuantitationType.SourcesQuantitationType_list.

Inner list class for holding multiple entries for attribute sourcesQuantitationType.

HasSourcesQuantitationType.SourcesQuantitationType_list() - Constructor for class org.biomage.Interface.HasSourcesQuantitationType.SourcesQuantitationType_list

HasSpecies - interface org.biomage.Interface.HasSpecies.

HasSubregions - interface org.biomage.Interface.HasSubregions.

HasSubregions.Subregions_list - class org.biomage.Interface.HasSubregions.Subregions_list.

Inner list class for holding multiple entries for attribute subregions.

HasSubregions.Subregions_list() - Constructor for class org.biomage.Interface.HasSubregions.Subregions_list

HasSubstrateType - interface org.biomage.Interface.HasSubstrateType.

HasSummaryStatistics - interface org.biomage.Interface.HasSummaryStatistics.

HasSummaryStatistics.SummaryStatistics_list - class org.biomage.Interface.HasSummaryStatistics.SummaryStatistics_list.

Inner list class for holding multiple entries for attribute summaryStatistics.

HasSummaryStatistics.SummaryStatistics_list() - Constructor for class org.biomage.Interface.HasSummaryStatistics.SummaryStatistics_list

HasSurfaceType - interface org.biomage.Interface.HasSurfaceType.

HasTarget - interface org.biomage.Interface.HasTarget.

HasTargetQuantitationType - interface org.biomage.Interface.HasTargetQuantitationType.

HasTechnologyType - interface org.biomage.Interface.HasTechnologyType.

HasTopLevelBioAssays - interface org.biomage.Interface.HasTopLevelBioAssays.

HasTopLevelBioAssays.TopLevelBioAssays_list - class org.biomage.Interface.HasTopLevelBioAssays.TopLevelBioAssays_list.

Inner list class for holding multiple entries for attribute topLevelBioAssays.

HasTopLevelBioAssays.TopLevelBioAssays_list() - Constructor for class org.biomage.Interface.HasTopLevelBioAssays.TopLevelBioAssays_list

HasTreatments - interface org.biomage.Interface.HasTreatments.

HasTreatments.Treatments_list - class org.biomage.Interface.HasTreatments.Treatments_list.

Inner list class for holding multiple entries for attribute treatments.

HasTreatments.Treatments_list() - Constructor for class org.biomage.Interface.HasTreatments.Treatments_list

HasType - interface org.biomage.Interface.HasType.

HasTypes - interface org.biomage.Interface.HasTypes.

HasTypes.Types_list - class org.biomage.Interface.HasTypes.Types_list.

Inner list class for holding multiple entries for attribute types.

HasTypes.Types_list() - Constructor for class org.biomage.Interface.HasTypes.Types_list

HasUnit - interface org.biomage.Interface.HasUnit.

HasWarningType - interface org.biomage.Interface.HasWarningType.

HasWriteGroups - interface org.biomage.Interface.HasWriteGroups.

HasWriteGroups.WriteGroups_list - class org.biomage.Interface.HasWriteGroups.WriteGroups_list.

Inner list class for holding multiple entries for attribute writeGroups.

HasWriteGroups.WriteGroups_list() - Constructor for class org.biomage.Interface.HasWriteGroups.WriteGroups_list

HasZone - interface org.biomage.Interface.HasZone.

HasZoneGroups - interface org.biomage.Interface.HasZoneGroups.

HasZoneGroups.ZoneGroups_list - class org.biomage.Interface.HasZoneGroups.ZoneGroups_list.

Inner list class for holding multiple entries for attribute zoneGroups.

HasZoneGroups.ZoneGroups_list() - Constructor for class org.biomage.Interface.HasZoneGroups.ZoneGroups_list

HasZoneLayout - interface org.biomage.Interface.HasZoneLayout.

HasZoneLocations - interface org.biomage.Interface.HasZoneLocations.

HasZoneLocations.ZoneLocations_list - class org.biomage.Interface.HasZoneLocations.ZoneLocations_list.

Inner list class for holding multiple entries for attribute zoneLocations.

HasZoneLocations.ZoneLocations_list() - Constructor for class org.biomage.Interface.HasZoneLocations.ZoneLocations_list

higherLevelAnalysis_package - Variable in class org.biomage.Common.MAGEJava

Describes the results of performing analysis on the result of the BioAssayData from an Experiment.

HigherLevelAnalysis_package - class org.biomage.HigherLevelAnalysis.HigherLevelAnalysis_package.

Describes the results of performing analysis on the result of the BioAssayData from an Experiment.

HigherLevelAnalysis_package.BioAssayDataCluster_list - class org.biomage.HigherLevelAnalysis.HigherLevelAnalysis_package.BioAssayDataCluster_list.

Inner list class for holding multiple entries for attribute bioAssayDataCluster.

HigherLevelAnalysis_package.BioAssayDataCluster_list() - Constructor for class org.biomage.HigherLevelAnalysis.HigherLevelAnalysis_package.BioAssayDataCluster_list

HigherLevelAnalysis_package() - Constructor for class org.biomage.HigherLevelAnalysis.HigherLevelAnalysis_package

Default constructor.

HigherLevelAnalysis_package(Attributes) - Constructor for class org.biomage.HigherLevelAnalysis.HigherLevelAnalysis_package

Attribute constructor.

Hybridization - class org.biomage.BioAssay.Hybridization.

The archetypal bioAssayCreation event, whereby biomaterials are hybridized to an array.

Hybridization() - Constructor for class org.biomage.BioAssay.Hybridization

Default constructor.

Hybridization(Attributes) - Constructor for class org.biomage.BioAssay.Hybridization

Attribute constructor.