A B C D E F G H I J K L M N O P Q R S T U V W Y Z

I

ID - Static variable in class org.biomage.tools.generate_er.CreateMageER

name of the primary key for tables

Identifiable - class org.biomage.Common.Identifiable.

An Identifiable class is one that has an unambiguous reference within the scope.

Identifiable() - Constructor for class org.biomage.Common.Identifiable

Default constructor.

Identifiable(Attributes) - Constructor for class org.biomage.Common.Identifiable

Attribute constructor.

identifierLIMS - Variable in class org.biomage.Array.ManufactureLIMS

Association to a LIMS data source for further information on the manufacturing process.

identifierMap - Variable in class org.biomage.tools.xmlutils.MAGEContentHandler

ignorableWhitespace(char[], int, int) - Method in class org.biomage.tools.xmlutils.MAGEContentHandler

Image - class org.biomage.BioAssay.Image.

An image is created by an imageAcquisition event, typically by scanning the hybridized array (the PhysicalBioAssay).

Image() - Constructor for class org.biomage.BioAssay.Image

Default constructor.

Image(Attributes) - Constructor for class org.biomage.BioAssay.Image

Attribute constructor.

ImageAcquisition - class org.biomage.BioAssay.ImageAcquisition.

The process by which an image is generated (typically scanning).

ImageAcquisition() - Constructor for class org.biomage.BioAssay.ImageAcquisition

Default constructor.

ImageAcquisition(Attributes) - Constructor for class org.biomage.BioAssay.ImageAcquisition

Attribute constructor.

images - Variable in class org.biomage.BioAssay.ImageAcquisition

The images produced by the ImageAcquisition event.

immobilizedCharacteristics - Variable in class org.biomage.DesignElement.Reporter

The sequence annotation on the BioMaterial this reporter represents.

Importer - class org.biomage.tools.xmlutils.Importer.

Description: Class that is responsible for importing a MAGE-ML document into a MAGE-OM model.

Importer() - Constructor for class org.biomage.tools.xmlutils.Importer

ImportExportTest - class org.biomage.tools.xmlutils.ImportExportTest.

Description: Demonstration class that imports a MAGE-ML document into a MAGE-OM model and then writes it back out again.

ImportExportTest() - Constructor for class org.biomage.tools.xmlutils.ImportExportTest

INDENT - Static variable in class org.biomage.tools.generate_er.CreateMageER

one indent: a tab key

Index - class org.biomage.tools.generate_er.Index.

Index() - Constructor for class org.biomage.tools.generate_er.Index

Description: Constructor for the Index object.

Index(String, AssociationColumn) - Constructor for class org.biomage.tools.generate_er.Index

Description: Constructor for the Index object.

information - Variable in class org.biomage.Array.Array

Association between the manufactured array and the information on that manufacture.

initialCap(String) - Static method in class org.biomage.tools.helpers.StringOutputHelpers

Description: Takes the string and returns a new string based on the input but with the first letter capitalized.

initialLower(String) - Static method in class org.biomage.tools.helpers.StringOutputHelpers

Description: Takes the string and returns a new string based on the input but with the first letter in lower case.

INTEGER - Static variable in class org.biomage.tools.generate_er.CreateMageER

association column type is int, and also columns in linking table