org.biomage.Array
Class ManufactureLIMSBiomaterial

java.lang.Object
  |
  +--org.biomage.Common.Extendable
        |
        +--org.biomage.Common.Describable
              |
              +--org.biomage.Array.ManufactureLIMS
                    |
                    +--org.biomage.Array.ManufactureLIMSBiomaterial

All Implemented Interfaces:

HasAuditTrail, HasBioMaterial, HasDescriptions, HasFeature, HasIdentifierLIMS, HasPropertySets, HasSecurity, java.io.Serializable

public class ManufactureLIMSBiomaterial

extends ManufactureLIMS

implements java.io.Serializable

Stores the location from which a biomaterial was obtained.

See Also:

Serialized Form

Nested Class Summary

Nested classes inherited from class org.biomage.Interface.HasAuditTrail

HasAuditTrail.AuditTrail_list

Nested classes inherited from class org.biomage.Interface.HasDescriptions

HasDescriptions.Descriptions_list

Nested classes inherited from class org.biomage.Interface.HasPropertySets

HasPropertySets.PropertySets_list

Field Summary

Fields inherited from class org.biomage.Array.ManufactureLIMS

bioMaterial, feature, identifierLIMS

Fields inherited from class org.biomage.Common.Describable

auditTrail, descriptions, security

Fields inherited from class org.biomage.Common.Extendable

propertySets

Constructor Summary

ManufactureLIMSBiomaterial()
Default constructor.

ManufactureLIMSBiomaterial(org.xml.sax.Attributes atts)
Attribute constructor.

Method Summary

java.lang.String	getBioMaterialPlateCol() Get method for bioMaterialPlateCol
java.lang.String	getBioMaterialPlateIdentifier() Get method for bioMaterialPlateIdentifier
java.lang.String	getBioMaterialPlateRow() Get method for bioMaterialPlateRow
void	setBioMaterialPlateCol(java.lang.String bioMaterialPlateCol) Set method for bioMaterialPlateCol
void	setBioMaterialPlateIdentifier(java.lang.String bioMaterialPlateIdentifier) Set method for bioMaterialPlateIdentifier
void	setBioMaterialPlateRow(java.lang.String bioMaterialPlateRow) Set method for bioMaterialPlateRow
void	writeAssociations(java.io.Writer out) writeAssociations This method is responsible for assembling the association data into XML.
void	writeAttributes(java.io.Writer out) writeAttributes This method is responsible for assembling the attribute data into XML.
void	writeMAGEML(java.io.Writer out) writeMAGEML This method is responsible for assembling the attribute and association data into XML.

Methods inherited from class org.biomage.Array.ManufactureLIMS

getBioMaterial, getFeature, getIdentifierLIMS, getQuality, setBioMaterial, setFeature, setIdentifierLIMS, setQuality

Methods inherited from class org.biomage.Common.Describable

addToAuditTrail, addToAuditTrail, addToDescriptions, addToDescriptions, getAuditTrail, getDescriptions, getFromAuditTrail, getFromDescriptions, getSecurity, removeElementAtFromAuditTrail, removeElementAtFromDescriptions, removeFromAuditTrail, removeFromDescriptions, setAuditTrail, setDescriptions, setSecurity

Methods inherited from class org.biomage.Common.Extendable

addToPropertySets, addToPropertySets, getFromPropertySets, getPropertySets, removeElementAtFromPropertySets, removeFromPropertySets, setPropertySets

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

ManufactureLIMSBiomaterial

public ManufactureLIMSBiomaterial()

Default constructor.

ManufactureLIMSBiomaterial

public ManufactureLIMSBiomaterial(org.xml.sax.Attributes atts)

Attribute constructor. Looks up the attributes in the parameter and casts them from strings appropriately

Method Detail

writeMAGEML

public void writeMAGEML(java.io.Writer out)
                 throws java.io.IOException

writeMAGEML This method is responsible for assembling the attribute and association data into XML. It creates the object tag and then calls the writeAttributes and writeAssociation methods.

Overrides:

writeMAGEML in class ManufactureLIMS

java.io.IOException

writeAttributes

public void writeAttributes(java.io.Writer out)
                     throws java.io.IOException

writeAttributes This method is responsible for assembling the attribute data into XML. It calls the super method to write out all attributes of this class and it's ancestors.

Overrides:

writeAttributes in class ManufactureLIMS

java.io.IOException

writeAssociations

public void writeAssociations(java.io.Writer out)
                       throws java.io.IOException

writeAssociations This method is responsible for assembling the association data into XML. It calls the super method to write out all associations of this class's ancestors.

Overrides:

writeAssociations in class ManufactureLIMS

java.io.IOException

setBioMaterialPlateIdentifier

public void setBioMaterialPlateIdentifier(java.lang.String bioMaterialPlateIdentifier)

Set method for bioMaterialPlateIdentifier

getBioMaterialPlateIdentifier

public java.lang.String getBioMaterialPlateIdentifier()

Get method for bioMaterialPlateIdentifier

Returns:

value of the attribute

setBioMaterialPlateRow

public void setBioMaterialPlateRow(java.lang.String bioMaterialPlateRow)

Set method for bioMaterialPlateRow

getBioMaterialPlateRow

public java.lang.String getBioMaterialPlateRow()

Get method for bioMaterialPlateRow

Returns:

value of the attribute

setBioMaterialPlateCol

public void setBioMaterialPlateCol(java.lang.String bioMaterialPlateCol)

Set method for bioMaterialPlateCol

getBioMaterialPlateCol

public java.lang.String getBioMaterialPlateCol()

Get method for bioMaterialPlateCol

Returns:

value of the attribute