org.biomage.Array
Class PositionDelta

java.lang.Object
  |
  +--org.biomage.Common.Extendable
        |
        +--org.biomage.Array.PositionDelta

All Implemented Interfaces:

HasDistanceUnit, HasPropertySets, java.io.Serializable

public class PositionDelta

extends Extendable

implements java.io.Serializable, HasDistanceUnit

The delta the feature was actually printed on the array from the position specified for the feature in the array design.

See Also:

Serialized Form

Nested Class Summary

Nested classes inherited from class org.biomage.Interface.HasPropertySets

HasPropertySets.PropertySets_list

Field Summary

protected DistanceUnit

distanceUnit The unit for the attributes.

Fields inherited from class org.biomage.Common.Extendable

propertySets

Constructor Summary

PositionDelta()
Default constructor.

PositionDelta(org.xml.sax.Attributes atts)
Attribute constructor.

Method Summary

float	getDeltaX() Get method for deltaX
float	getDeltaY() Get method for deltaY
DistanceUnit	getDistanceUnit() Get method for distanceUnit
void	setDeltaX(float deltaX) Set method for deltaX
void	setDeltaY(float deltaY) Set method for deltaY
void	setDistanceUnit(DistanceUnit distanceUnit) Set method for distanceUnit
void	writeAssociations(java.io.Writer out) writeAssociations This method is responsible for assembling the association data into XML.
void	writeAttributes(java.io.Writer out) writeAttributes This method is responsible for assembling the attribute data into XML.
void	writeMAGEML(java.io.Writer out) writeMAGEML This method is responsible for assembling the attribute and association data into XML.

Methods inherited from class org.biomage.Common.Extendable

addToPropertySets, addToPropertySets, getFromPropertySets, getPropertySets, removeElementAtFromPropertySets, removeFromPropertySets, setPropertySets

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

distanceUnit

protected DistanceUnit distanceUnit

The unit for the attributes.

Constructor Detail

PositionDelta

public PositionDelta()

Default constructor.

PositionDelta

public PositionDelta(org.xml.sax.Attributes atts)

Attribute constructor. Looks up the attributes in the parameter and casts them from strings appropriately

Method Detail

writeMAGEML

public void writeMAGEML(java.io.Writer out)
                 throws java.io.IOException

writeMAGEML This method is responsible for assembling the attribute and association data into XML. It creates the object tag and then calls the writeAttributes and writeAssociation methods.

Overrides:

writeMAGEML in class Extendable

java.io.IOException

writeAttributes

public void writeAttributes(java.io.Writer out)
                     throws java.io.IOException

writeAttributes This method is responsible for assembling the attribute data into XML. It calls the super method to write out all attributes of this class and it's ancestors.

Overrides:

writeAttributes in class Extendable

java.io.IOException

writeAssociations

public void writeAssociations(java.io.Writer out)
                       throws java.io.IOException

writeAssociations This method is responsible for assembling the association data into XML. It calls the super method to write out all associations of this class's ancestors.

Overrides:

writeAssociations in class Extendable

java.io.IOException

setDeltaX

public void setDeltaX(float deltaX)

Set method for deltaX

getDeltaX

public float getDeltaX()

Get method for deltaX

Returns:

value of the attribute

setDeltaY

public void setDeltaY(float deltaY)

Set method for deltaY

getDeltaY

public float getDeltaY()

Get method for deltaY

Returns:

value of the attribute

setDistanceUnit

public void setDistanceUnit(DistanceUnit distanceUnit)

Set method for distanceUnit

Specified by:

setDistanceUnit in interface HasDistanceUnit

getDistanceUnit

public DistanceUnit getDistanceUnit()

Get method for distanceUnit

Specified by:

getDistanceUnit in interface HasDistanceUnit

Returns:

value of the attribute