org.biomage.ArrayDesign
Class Zone

java.lang.Object
  |
  +--org.biomage.Common.Extendable
        |
        +--org.biomage.Common.Describable
              |
              +--org.biomage.Common.Identifiable
                    |
                    +--org.biomage.ArrayDesign.Zone

All Implemented Interfaces:

HasAuditTrail, HasDescriptions, HasDistanceUnit, HasPropertySets, HasSecurity, java.io.Serializable

public class Zone

extends Identifiable

implements java.io.Serializable, HasDistanceUnit

Specifies the location of a zone on an array.

See Also:

Serialized Form

Nested Class Summary

Nested classes inherited from class org.biomage.Interface.HasAuditTrail

HasAuditTrail.AuditTrail_list

Nested classes inherited from class org.biomage.Interface.HasDescriptions

HasDescriptions.Descriptions_list

Nested classes inherited from class org.biomage.Interface.HasPropertySets

HasPropertySets.PropertySets_list

Field Summary

protected DistanceUnit

distanceUnit Unit for the Zone attributes.

Fields inherited from class org.biomage.Common.Describable

auditTrail, descriptions, security

Fields inherited from class org.biomage.Common.Extendable

propertySets

Constructor Summary

Zone()
Default constructor.

Zone(org.xml.sax.Attributes atts)
Attribute constructor.

Method Summary

int	getColumn() Get method for column
DistanceUnit	getDistanceUnit() Get method for distanceUnit
float	getLowerRightX() Get method for lowerRightX
float	getLowerRightY() Get method for lowerRightY
int	getRow() Get method for row
float	getUpperLeftX() Get method for upperLeftX
float	getUpperLeftY() Get method for upperLeftY
void	setColumn(int column) Set method for column
void	setDistanceUnit(DistanceUnit distanceUnit) Set method for distanceUnit
void	setLowerRightX(float lowerRightX) Set method for lowerRightX
void	setLowerRightY(float lowerRightY) Set method for lowerRightY
void	setRow(int row) Set method for row
void	setUpperLeftX(float upperLeftX) Set method for upperLeftX
void	setUpperLeftY(float upperLeftY) Set method for upperLeftY
void	writeAssociations(java.io.Writer out) writeAssociations This method is responsible for assembling the association data into XML.
void	writeAttributes(java.io.Writer out) writeAttributes This method is responsible for assembling the attribute data into XML.
void	writeMAGEML(java.io.Writer out) writeMAGEML This method is responsible for assembling the attribute and association data into XML.

Methods inherited from class org.biomage.Common.Identifiable

getIdentifier, getName, setIdentifier, setName

Methods inherited from class org.biomage.Common.Describable

addToAuditTrail, addToAuditTrail, addToDescriptions, addToDescriptions, getAuditTrail, getDescriptions, getFromAuditTrail, getFromDescriptions, getSecurity, removeElementAtFromAuditTrail, removeElementAtFromDescriptions, removeFromAuditTrail, removeFromDescriptions, setAuditTrail, setDescriptions, setSecurity

Methods inherited from class org.biomage.Common.Extendable

addToPropertySets, addToPropertySets, getFromPropertySets, getPropertySets, removeElementAtFromPropertySets, removeFromPropertySets, setPropertySets

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

distanceUnit

protected DistanceUnit distanceUnit

Unit for the Zone attributes.

Constructor Detail

Zone

public Zone()

Default constructor.

Zone

public Zone(org.xml.sax.Attributes atts)

Attribute constructor. Looks up the attributes in the parameter and casts them from strings appropriately

Method Detail

writeMAGEML

public void writeMAGEML(java.io.Writer out)
                 throws java.io.IOException

writeMAGEML This method is responsible for assembling the attribute and association data into XML. It creates the object tag and then calls the writeAttributes and writeAssociation methods.

Overrides:

writeMAGEML in class Identifiable

java.io.IOException

writeAttributes

public void writeAttributes(java.io.Writer out)
                     throws java.io.IOException

writeAttributes This method is responsible for assembling the attribute data into XML. It calls the super method to write out all attributes of this class and it's ancestors.

Overrides:

writeAttributes in class Identifiable

java.io.IOException

writeAssociations

public void writeAssociations(java.io.Writer out)
                       throws java.io.IOException

writeAssociations This method is responsible for assembling the association data into XML. It calls the super method to write out all associations of this class's ancestors.

Overrides:

writeAssociations in class Identifiable

java.io.IOException

setRow

public void setRow(int row)

Set method for row

getRow

public int getRow()

Get method for row

Returns:

value of the attribute

setColumn

public void setColumn(int column)

Set method for column

getColumn

public int getColumn()

Get method for column

Returns:

value of the attribute

setUpperLeftX

public void setUpperLeftX(float upperLeftX)

Set method for upperLeftX

getUpperLeftX

public float getUpperLeftX()

Get method for upperLeftX

Returns:

value of the attribute

setUpperLeftY

public void setUpperLeftY(float upperLeftY)

Set method for upperLeftY

getUpperLeftY

public float getUpperLeftY()

Get method for upperLeftY

Returns:

value of the attribute

setLowerRightX

public void setLowerRightX(float lowerRightX)

Set method for lowerRightX

getLowerRightX

public float getLowerRightX()

Get method for lowerRightX

Returns:

value of the attribute

setLowerRightY

public void setLowerRightY(float lowerRightY)

Set method for lowerRightY

getLowerRightY

public float getLowerRightY()

Get method for lowerRightY

Returns:

value of the attribute

setDistanceUnit

public void setDistanceUnit(DistanceUnit distanceUnit)

Set method for distanceUnit

Specified by:

setDistanceUnit in interface HasDistanceUnit

getDistanceUnit

public DistanceUnit getDistanceUnit()

Get method for distanceUnit

Specified by:

getDistanceUnit in interface HasDistanceUnit

Returns:

value of the attribute