org.biomage.BioAssayData
Class BioDataCube

java.lang.Object
  |
  +--org.biomage.Common.Extendable
        |
        +--org.biomage.BioAssayData.BioDataValues
              |
              +--org.biomage.BioAssayData.BioDataCube

All Implemented Interfaces:

HasPropertySets, java.io.Serializable

public class BioDataCube

extends BioDataValues

implements java.io.Serializable

A three-dimensional cube representation of the data.

See Also:

Serialized Form

Nested Class Summary

class

BioDataCube.Order Inner class for the enumeration values that the attribute order can assume.

Nested classes inherited from class org.biomage.Interface.HasPropertySets

HasPropertySets.PropertySets_list

Field Summary

Fields inherited from class org.biomage.Common.Extendable

propertySets

Constructor Summary

BioDataCube()
Default constructor.

BioDataCube(org.xml.sax.Attributes atts)
Attribute constructor.

Method Summary

java.lang.Object[][][]	getCube() Get method for cube
java.lang.String	getNameByValueOrder(int val) For Order get the Name of the Enumeration type by passing a Value to it.
java.lang.String	getNameOrder() Return the current name of the Enumeration type of Order.
BioDataCube.Order	getOrder() Get method for order
int	getValueByNameOrder(java.lang.String name) For Order get the Value of the Enumeration type by passing a Name to it.
int	getValueOrder() Return the currrent value of the Enumeration type of Order.
void	setCube(java.lang.Object[][][] cube) Set method for cube
java.lang.String	setNameByValueOrder(int val) For Order set the Name of the Enumeration type by passing a value (int)
void	setOrder(BioDataCube.Order order) Set method for order
int	setValueByNameOrder(java.lang.String name) For Order set the Value of the Enumeration type by passing a Name to it.
void	writeAssociations(java.io.Writer out) writeAssociations This method is responsible for assembling the association data into XML.
void	writeAttributes(java.io.Writer out) writeAttributes This method is responsible for assembling the attribute data into XML.
void	writeMAGEML(java.io.Writer out) writeMAGEML This method is responsible for assembling the attribute and association data into XML.

Methods inherited from class org.biomage.Common.Extendable

addToPropertySets, addToPropertySets, getFromPropertySets, getPropertySets, removeElementAtFromPropertySets, removeFromPropertySets, setPropertySets

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

BioDataCube

public BioDataCube()

Default constructor.

BioDataCube

public BioDataCube(org.xml.sax.Attributes atts)

Attribute constructor. Looks up the attributes in the parameter and casts them from strings appropriately

Method Detail

writeMAGEML

public void writeMAGEML(java.io.Writer out)
                 throws java.io.IOException

writeMAGEML This method is responsible for assembling the attribute and association data into XML. It creates the object tag and then calls the writeAttributes and writeAssociation methods.

Overrides:

writeMAGEML in class BioDataValues

java.io.IOException

writeAttributes

public void writeAttributes(java.io.Writer out)
                     throws java.io.IOException

writeAttributes This method is responsible for assembling the attribute data into XML. It calls the super method to write out all attributes of this class and it's ancestors.

Overrides:

writeAttributes in class BioDataValues

java.io.IOException

writeAssociations

public void writeAssociations(java.io.Writer out)
                       throws java.io.IOException

writeAssociations This method is responsible for assembling the association data into XML. It calls the super method to write out all associations of this class's ancestors.

Overrides:

writeAssociations in class BioDataValues

java.io.IOException

setCube

public void setCube(java.lang.Object[][][] cube)

Set method for cube

getCube

public java.lang.Object[][][] getCube()

Get method for cube

Returns:

value of the attribute

setOrder

public void setOrder(BioDataCube.Order order)

Set method for order

getOrder

public BioDataCube.Order getOrder()

Get method for order

Returns:

value of the attribute

setNameByValueOrder

public java.lang.String setNameByValueOrder(int val)

For Order set the Name of the Enumeration type by passing a value (int)

setValueByNameOrder

public int setValueByNameOrder(java.lang.String name)

For Order set the Value of the Enumeration type by passing a Name to it.

getNameByValueOrder

public java.lang.String getNameByValueOrder(int val)

For Order get the Name of the Enumeration type by passing a Value to it.

getValueByNameOrder

public int getValueByNameOrder(java.lang.String name)

For Order get the Value of the Enumeration type by passing a Name to it.

getNameOrder

public java.lang.String getNameOrder()

Return the current name of the Enumeration type of Order.

getValueOrder

public int getValueOrder()

Return the currrent value of the Enumeration type of Order.