org.biomage.BioAssayData
Class DesignElementMapping

java.lang.Object
  |
  +--org.biomage.Common.Extendable
        |
        +--org.biomage.BioAssayData.DesignElementMapping

All Implemented Interfaces:

HasDesignElementMaps, HasPropertySets, java.io.Serializable

public class DesignElementMapping

extends Extendable

implements java.io.Serializable, HasDesignElementMaps

Container of the mappings of the input DesignElement dimensions to the output DesignElement dimension.

See Also:

Serialized Form

Nested Class Summary

Nested classes inherited from class org.biomage.Interface.HasDesignElementMaps

HasDesignElementMaps.DesignElementMaps_list

Nested classes inherited from class org.biomage.Interface.HasPropertySets

HasPropertySets.PropertySets_list

Field Summary

protected HasDesignElementMaps.DesignElementMaps_list

designElementMaps The maps for the DesignElements.

Fields inherited from class org.biomage.Common.Extendable

propertySets

Constructor Summary

DesignElementMapping()
Default constructor.

DesignElementMapping(org.xml.sax.Attributes atts)
Attribute constructor.

Method Summary

void	addToDesignElementMaps(DesignElementMap designElementMap) Method to add DesignElementMap to DesignElementMaps_list
void	addToDesignElementMaps(int position, DesignElementMap designElementMap) Method to add DesignElementMap at position to DesignElementMaps_list
HasDesignElementMaps.DesignElementMaps_list	getDesignElementMaps() Get method for designElementMaps
DesignElementMap	getFromDesignElementMaps(int position) Method to get DesignElementMap from DesignElementMaps_list
void	removeElementAtFromDesignElementMaps(int position) Method to remove by position from DesignElementMaps_list
void	removeFromDesignElementMaps(DesignElementMap designElementMap) Method to remove first DesignElementMap from DesignElementMaps_list
void	setDesignElementMaps(HasDesignElementMaps.DesignElementMaps_list designElementMaps) Set method for designElementMaps
void	writeAssociations(java.io.Writer out) writeAssociations This method is responsible for assembling the association data into XML.
void	writeAttributes(java.io.Writer out) writeAttributes This method is responsible for assembling the attribute data into XML.
void	writeMAGEML(java.io.Writer out) writeMAGEML This method is responsible for assembling the attribute and association data into XML.

Methods inherited from class org.biomage.Common.Extendable

addToPropertySets, addToPropertySets, getFromPropertySets, getPropertySets, removeElementAtFromPropertySets, removeFromPropertySets, setPropertySets

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

designElementMaps

protected HasDesignElementMaps.DesignElementMaps_list designElementMaps

The maps for the DesignElements.

Constructor Detail

DesignElementMapping

public DesignElementMapping()

Default constructor.

DesignElementMapping

public DesignElementMapping(org.xml.sax.Attributes atts)

Attribute constructor. Looks up the attributes in the parameter and casts them from strings appropriately

Method Detail

writeMAGEML

public void writeMAGEML(java.io.Writer out)
                 throws java.io.IOException

writeMAGEML This method is responsible for assembling the attribute and association data into XML. It creates the object tag and then calls the writeAttributes and writeAssociation methods.

Overrides:

writeMAGEML in class Extendable

java.io.IOException

writeAttributes

public void writeAttributes(java.io.Writer out)
                     throws java.io.IOException

writeAttributes This method is responsible for assembling the attribute data into XML. It calls the super method to write out all attributes of this class and it's ancestors.

Overrides:

writeAttributes in class Extendable

java.io.IOException

writeAssociations

public void writeAssociations(java.io.Writer out)
                       throws java.io.IOException

writeAssociations This method is responsible for assembling the association data into XML. It calls the super method to write out all associations of this class's ancestors.

Overrides:

writeAssociations in class Extendable

java.io.IOException

setDesignElementMaps

public void setDesignElementMaps(HasDesignElementMaps.DesignElementMaps_list designElementMaps)

Set method for designElementMaps

Specified by:

setDesignElementMaps in interface HasDesignElementMaps

getDesignElementMaps

public HasDesignElementMaps.DesignElementMaps_list getDesignElementMaps()

Get method for designElementMaps

Specified by:

getDesignElementMaps in interface HasDesignElementMaps

Returns:

value of the attribute

addToDesignElementMaps

public void addToDesignElementMaps(DesignElementMap designElementMap)

Method to add DesignElementMap to DesignElementMaps_list

Specified by:

addToDesignElementMaps in interface HasDesignElementMaps

addToDesignElementMaps

public void addToDesignElementMaps(int position,
                                   DesignElementMap designElementMap)

Method to add DesignElementMap at position to DesignElementMaps_list

Specified by:

addToDesignElementMaps in interface HasDesignElementMaps

getFromDesignElementMaps

public DesignElementMap getFromDesignElementMaps(int position)

Method to get DesignElementMap from DesignElementMaps_list

Specified by:

getFromDesignElementMaps in interface HasDesignElementMaps

removeElementAtFromDesignElementMaps

public void removeElementAtFromDesignElementMaps(int position)

Method to remove by position from DesignElementMaps_list

Specified by:

removeElementAtFromDesignElementMaps in interface HasDesignElementMaps

removeFromDesignElementMaps

public void removeFromDesignElementMaps(DesignElementMap designElementMap)

Method to remove first DesignElementMap from DesignElementMaps_list

Specified by:

removeFromDesignElementMaps in interface HasDesignElementMaps