org.biomage.BioAssayData
Class QuantitationTypeDimension

java.lang.Object
  |
  +--org.biomage.Common.Extendable
        |
        +--org.biomage.Common.Describable
              |
              +--org.biomage.Common.Identifiable
                    |
                    +--org.biomage.BioAssayData.QuantitationTypeDimension

All Implemented Interfaces:

HasAuditTrail, HasDescriptions, HasPropertySets, HasQuantitationTypes, HasSecurity, java.io.Serializable

public class QuantitationTypeDimension

extends Identifiable

implements java.io.Serializable, HasQuantitationTypes

An ordered list of quantitationTypes.

See Also:

Serialized Form

Nested Class Summary

Nested classes inherited from class org.biomage.Interface.HasQuantitationTypes

HasQuantitationTypes.QuantitationTypes_list

Nested classes inherited from class org.biomage.Interface.HasAuditTrail

HasAuditTrail.AuditTrail_list

Nested classes inherited from class org.biomage.Interface.HasDescriptions

HasDescriptions.Descriptions_list

Nested classes inherited from class org.biomage.Interface.HasPropertySets

HasPropertySets.PropertySets_list

Field Summary

protected HasQuantitationTypes.QuantitationTypes_list

quantitationTypes The QuantitationTypes for this Dimension.

Fields inherited from class org.biomage.Common.Describable

auditTrail, descriptions, security

Fields inherited from class org.biomage.Common.Extendable

propertySets

Constructor Summary

QuantitationTypeDimension()
Default constructor.

QuantitationTypeDimension(org.xml.sax.Attributes atts)
Attribute constructor.

Method Summary

void	addToQuantitationTypes(int position, QuantitationType quantitationType) Method to add QuantitationType at position to QuantitationTypes_list
void	addToQuantitationTypes(QuantitationType quantitationType) Method to add QuantitationType to QuantitationTypes_list
QuantitationType	getFromQuantitationTypes(int position) Method to get QuantitationType from QuantitationTypes_list
HasQuantitationTypes.QuantitationTypes_list	getQuantitationTypes() Get method for quantitationTypes
void	removeElementAtFromQuantitationTypes(int position) Method to remove by position from QuantitationTypes_list
void	removeFromQuantitationTypes(QuantitationType quantitationType) Method to remove first QuantitationType from QuantitationTypes_list
void	setQuantitationTypes(HasQuantitationTypes.QuantitationTypes_list quantitationTypes) Set method for quantitationTypes
void	writeAssociations(java.io.Writer out) writeAssociations This method is responsible for assembling the association data into XML.
void	writeAttributes(java.io.Writer out) writeAttributes This method is responsible for assembling the attribute data into XML.
void	writeMAGEML(java.io.Writer out) writeMAGEML This method is responsible for assembling the attribute and association data into XML.

Methods inherited from class org.biomage.Common.Identifiable

getIdentifier, getName, setIdentifier, setName

Methods inherited from class org.biomage.Common.Describable

addToAuditTrail, addToAuditTrail, addToDescriptions, addToDescriptions, getAuditTrail, getDescriptions, getFromAuditTrail, getFromDescriptions, getSecurity, removeElementAtFromAuditTrail, removeElementAtFromDescriptions, removeFromAuditTrail, removeFromDescriptions, setAuditTrail, setDescriptions, setSecurity

Methods inherited from class org.biomage.Common.Extendable

addToPropertySets, addToPropertySets, getFromPropertySets, getPropertySets, removeElementAtFromPropertySets, removeFromPropertySets, setPropertySets

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

quantitationTypes

protected HasQuantitationTypes.QuantitationTypes_list quantitationTypes

The QuantitationTypes for this Dimension.

Constructor Detail

QuantitationTypeDimension

public QuantitationTypeDimension()

Default constructor.

QuantitationTypeDimension

public QuantitationTypeDimension(org.xml.sax.Attributes atts)

Attribute constructor. Looks up the attributes in the parameter and casts them from strings appropriately

Method Detail

writeMAGEML

public void writeMAGEML(java.io.Writer out)
                 throws java.io.IOException

writeMAGEML This method is responsible for assembling the attribute and association data into XML. It creates the object tag and then calls the writeAttributes and writeAssociation methods.

Overrides:

writeMAGEML in class Identifiable

java.io.IOException

writeAttributes

public void writeAttributes(java.io.Writer out)
                     throws java.io.IOException

writeAttributes This method is responsible for assembling the attribute data into XML. It calls the super method to write out all attributes of this class and it's ancestors.

Overrides:

writeAttributes in class Identifiable

java.io.IOException

writeAssociations

public void writeAssociations(java.io.Writer out)
                       throws java.io.IOException

writeAssociations This method is responsible for assembling the association data into XML. It calls the super method to write out all associations of this class's ancestors.

Overrides:

writeAssociations in class Identifiable

java.io.IOException

setQuantitationTypes

public void setQuantitationTypes(HasQuantitationTypes.QuantitationTypes_list quantitationTypes)

Set method for quantitationTypes

Specified by:

setQuantitationTypes in interface HasQuantitationTypes

getQuantitationTypes

public HasQuantitationTypes.QuantitationTypes_list getQuantitationTypes()

Get method for quantitationTypes

Specified by:

getQuantitationTypes in interface HasQuantitationTypes

Returns:

value of the attribute

addToQuantitationTypes

public void addToQuantitationTypes(QuantitationType quantitationType)

Method to add QuantitationType to QuantitationTypes_list

Specified by:

addToQuantitationTypes in interface HasQuantitationTypes

addToQuantitationTypes

public void addToQuantitationTypes(int position,
                                   QuantitationType quantitationType)

Method to add QuantitationType at position to QuantitationTypes_list

Specified by:

addToQuantitationTypes in interface HasQuantitationTypes

getFromQuantitationTypes

public QuantitationType getFromQuantitationTypes(int position)

Method to get QuantitationType from QuantitationTypes_list

Specified by:

getFromQuantitationTypes in interface HasQuantitationTypes

removeElementAtFromQuantitationTypes

public void removeElementAtFromQuantitationTypes(int position)

Method to remove by position from QuantitationTypes_list

Specified by:

removeElementAtFromQuantitationTypes in interface HasQuantitationTypes

removeFromQuantitationTypes

public void removeFromQuantitationTypes(QuantitationType quantitationType)

Method to remove first QuantitationType from QuantitationTypes_list

Specified by:

removeFromQuantitationTypes in interface HasQuantitationTypes