org.biomage.BioAssayData
Class QuantitationTypeMapping

java.lang.Object
  |
  +--org.biomage.Common.Extendable
        |
        +--org.biomage.BioAssayData.QuantitationTypeMapping

All Implemented Interfaces:

HasPropertySets, HasQuantitationTypeMaps, java.io.Serializable

public class QuantitationTypeMapping

extends Extendable

implements java.io.Serializable, HasQuantitationTypeMaps

Container of the mappings of the input QuantitationType dimensions to the output QuantitationType dimension.

See Also:

Serialized Form

Nested Class Summary

Nested classes inherited from class org.biomage.Interface.HasQuantitationTypeMaps

HasQuantitationTypeMaps.QuantitationTypeMaps_list

Nested classes inherited from class org.biomage.Interface.HasPropertySets

HasPropertySets.PropertySets_list

Field Summary

protected HasQuantitationTypeMaps.QuantitationTypeMaps_list

quantitationTypeMaps The maps for the QuantitationTypes.

Fields inherited from class org.biomage.Common.Extendable

propertySets

Constructor Summary

QuantitationTypeMapping()
Default constructor.

QuantitationTypeMapping(org.xml.sax.Attributes atts)
Attribute constructor.

Method Summary

void	addToQuantitationTypeMaps(int position, QuantitationTypeMap quantitationTypeMap) Method to add QuantitationTypeMap at position to QuantitationTypeMaps_list
void	addToQuantitationTypeMaps(QuantitationTypeMap quantitationTypeMap) Method to add QuantitationTypeMap to QuantitationTypeMaps_list
QuantitationTypeMap	getFromQuantitationTypeMaps(int position) Method to get QuantitationTypeMap from QuantitationTypeMaps_list
HasQuantitationTypeMaps.QuantitationTypeMaps_list	getQuantitationTypeMaps() Get method for quantitationTypeMaps
void	removeElementAtFromQuantitationTypeMaps(int position) Method to remove by position from QuantitationTypeMaps_list
void	removeFromQuantitationTypeMaps(QuantitationTypeMap quantitationTypeMap) Method to remove first QuantitationTypeMap from QuantitationTypeMaps_list
void	setQuantitationTypeMaps(HasQuantitationTypeMaps.QuantitationTypeMaps_list quantitationTypeMaps) Set method for quantitationTypeMaps
void	writeAssociations(java.io.Writer out) writeAssociations This method is responsible for assembling the association data into XML.
void	writeAttributes(java.io.Writer out) writeAttributes This method is responsible for assembling the attribute data into XML.
void	writeMAGEML(java.io.Writer out) writeMAGEML This method is responsible for assembling the attribute and association data into XML.

Methods inherited from class org.biomage.Common.Extendable

addToPropertySets, addToPropertySets, getFromPropertySets, getPropertySets, removeElementAtFromPropertySets, removeFromPropertySets, setPropertySets

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

quantitationTypeMaps

protected HasQuantitationTypeMaps.QuantitationTypeMaps_list quantitationTypeMaps

The maps for the QuantitationTypes.

Constructor Detail

QuantitationTypeMapping

public QuantitationTypeMapping()

Default constructor.

QuantitationTypeMapping

public QuantitationTypeMapping(org.xml.sax.Attributes atts)

Attribute constructor. Looks up the attributes in the parameter and casts them from strings appropriately

Method Detail

writeMAGEML

public void writeMAGEML(java.io.Writer out)
                 throws java.io.IOException

writeMAGEML This method is responsible for assembling the attribute and association data into XML. It creates the object tag and then calls the writeAttributes and writeAssociation methods.

Overrides:

writeMAGEML in class Extendable

java.io.IOException

writeAttributes

public void writeAttributes(java.io.Writer out)
                     throws java.io.IOException

writeAttributes This method is responsible for assembling the attribute data into XML. It calls the super method to write out all attributes of this class and it's ancestors.

Overrides:

writeAttributes in class Extendable

java.io.IOException

writeAssociations

public void writeAssociations(java.io.Writer out)
                       throws java.io.IOException

writeAssociations This method is responsible for assembling the association data into XML. It calls the super method to write out all associations of this class's ancestors.

Overrides:

writeAssociations in class Extendable

java.io.IOException

setQuantitationTypeMaps

public void setQuantitationTypeMaps(HasQuantitationTypeMaps.QuantitationTypeMaps_list quantitationTypeMaps)

Set method for quantitationTypeMaps

Specified by:

setQuantitationTypeMaps in interface HasQuantitationTypeMaps

getQuantitationTypeMaps

public HasQuantitationTypeMaps.QuantitationTypeMaps_list getQuantitationTypeMaps()

Get method for quantitationTypeMaps

Specified by:

getQuantitationTypeMaps in interface HasQuantitationTypeMaps

Returns:

value of the attribute

addToQuantitationTypeMaps

public void addToQuantitationTypeMaps(QuantitationTypeMap quantitationTypeMap)

Method to add QuantitationTypeMap to QuantitationTypeMaps_list

Specified by:

addToQuantitationTypeMaps in interface HasQuantitationTypeMaps

addToQuantitationTypeMaps

public void addToQuantitationTypeMaps(int position,
                                      QuantitationTypeMap quantitationTypeMap)

Method to add QuantitationTypeMap at position to QuantitationTypeMaps_list

Specified by:

addToQuantitationTypeMaps in interface HasQuantitationTypeMaps

getFromQuantitationTypeMaps

public QuantitationTypeMap getFromQuantitationTypeMaps(int position)

Method to get QuantitationTypeMap from QuantitationTypeMaps_list

Specified by:

getFromQuantitationTypeMaps in interface HasQuantitationTypeMaps

removeElementAtFromQuantitationTypeMaps

public void removeElementAtFromQuantitationTypeMaps(int position)

Method to remove by position from QuantitationTypeMaps_list

Specified by:

removeElementAtFromQuantitationTypeMaps in interface HasQuantitationTypeMaps

removeFromQuantitationTypeMaps

public void removeFromQuantitationTypeMaps(QuantitationTypeMap quantitationTypeMap)

Method to remove first QuantitationTypeMap from QuantitationTypeMaps_list

Specified by:

removeFromQuantitationTypeMaps in interface HasQuantitationTypeMaps