org.biomage.BioMaterial
Class BioMaterialMeasurement

java.lang.Object
  |
  +--org.biomage.Common.Extendable
        |
        +--org.biomage.BioMaterial.BioMaterialMeasurement

All Implemented Interfaces:

HasBioMaterial, HasMeasurement, HasPropertySets, java.io.Serializable

public class BioMaterialMeasurement

extends Extendable

implements java.io.Serializable, HasBioMaterial, HasMeasurement

A BioMaterialMeasurement is a pairing of a source BioMaterial and an amount (Measurement) of that BioMaterial.

See Also:

Serialized Form

Nested Class Summary

Nested classes inherited from class org.biomage.Interface.HasPropertySets

HasPropertySets.PropertySets_list

Field Summary

protected BioMaterial	bioMaterial A source BioMaterial for a treatment.
protected Measurement	measurement The amount of the BioMaterial.

Fields inherited from class org.biomage.Common.Extendable

propertySets

Constructor Summary

BioMaterialMeasurement()
Default constructor.

BioMaterialMeasurement(org.xml.sax.Attributes atts)
Attribute constructor.

Method Summary

BioMaterial	getBioMaterial() Get method for bioMaterial
Measurement	getMeasurement() Get method for measurement
void	setBioMaterial(BioMaterial bioMaterial) Set method for bioMaterial
void	setMeasurement(Measurement measurement) Set method for measurement
void	writeAssociations(java.io.Writer out) writeAssociations This method is responsible for assembling the association data into XML.
void	writeAttributes(java.io.Writer out) writeAttributes This method is responsible for assembling the attribute data into XML.
void	writeMAGEML(java.io.Writer out) writeMAGEML This method is responsible for assembling the attribute and association data into XML.

Methods inherited from class org.biomage.Common.Extendable

addToPropertySets, addToPropertySets, getFromPropertySets, getPropertySets, removeElementAtFromPropertySets, removeFromPropertySets, setPropertySets

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

bioMaterial

protected BioMaterial bioMaterial

A source BioMaterial for a treatment.

measurement

protected Measurement measurement

The amount of the BioMaterial.

Constructor Detail

BioMaterialMeasurement

public BioMaterialMeasurement()

Default constructor.

BioMaterialMeasurement

public BioMaterialMeasurement(org.xml.sax.Attributes atts)

Attribute constructor. Looks up the attributes in the parameter and casts them from strings appropriately

Method Detail

writeMAGEML

public void writeMAGEML(java.io.Writer out)
                 throws java.io.IOException

writeMAGEML This method is responsible for assembling the attribute and association data into XML. It creates the object tag and then calls the writeAttributes and writeAssociation methods.

Overrides:

writeMAGEML in class Extendable

java.io.IOException

writeAttributes

public void writeAttributes(java.io.Writer out)
                     throws java.io.IOException

writeAttributes This method is responsible for assembling the attribute data into XML. It calls the super method to write out all attributes of this class and it's ancestors.

Overrides:

writeAttributes in class Extendable

java.io.IOException

writeAssociations

public void writeAssociations(java.io.Writer out)
                       throws java.io.IOException

writeAssociations This method is responsible for assembling the association data into XML. It calls the super method to write out all associations of this class's ancestors.

Overrides:

writeAssociations in class Extendable

java.io.IOException

setBioMaterial

public void setBioMaterial(BioMaterial bioMaterial)

Set method for bioMaterial

Specified by:

setBioMaterial in interface HasBioMaterial

getBioMaterial

public BioMaterial getBioMaterial()

Get method for bioMaterial

Specified by:

getBioMaterial in interface HasBioMaterial

Returns:

value of the attribute

setMeasurement

public void setMeasurement(Measurement measurement)

Set method for measurement

Specified by:

setMeasurement in interface HasMeasurement

getMeasurement

public Measurement getMeasurement()

Get method for measurement

Specified by:

getMeasurement in interface HasMeasurement

Returns:

value of the attribute