org.biomage.BioMaterial
Class CompoundMeasurement

java.lang.Object
  |
  +--org.biomage.Common.Extendable
        |
        +--org.biomage.BioMaterial.CompoundMeasurement

All Implemented Interfaces:

HasCompound, HasMeasurement, HasPropertySets, java.io.Serializable

public class CompoundMeasurement

extends Extendable

implements java.io.Serializable, HasCompound, HasMeasurement

A CompoundMeasurement is a pairing of a source Compound and an amount (Measurement) of that Compound.

See Also:

Serialized Form

Nested Class Summary

Nested classes inherited from class org.biomage.Interface.HasPropertySets

HasPropertySets.PropertySets_list

Field Summary

protected Compound	compound A Compound to be used to create another Compound.
protected Measurement	measurement The amount of the Compound.

Fields inherited from class org.biomage.Common.Extendable

propertySets

Constructor Summary

CompoundMeasurement()
Default constructor.

CompoundMeasurement(org.xml.sax.Attributes atts)
Attribute constructor.

Method Summary

Compound	getCompound() Get method for compound
Measurement	getMeasurement() Get method for measurement
void	setCompound(Compound compound) Set method for compound
void	setMeasurement(Measurement measurement) Set method for measurement
void	writeAssociations(java.io.Writer out) writeAssociations This method is responsible for assembling the association data into XML.
void	writeAttributes(java.io.Writer out) writeAttributes This method is responsible for assembling the attribute data into XML.
void	writeMAGEML(java.io.Writer out) writeMAGEML This method is responsible for assembling the attribute and association data into XML.

Methods inherited from class org.biomage.Common.Extendable

addToPropertySets, addToPropertySets, getFromPropertySets, getPropertySets, removeElementAtFromPropertySets, removeFromPropertySets, setPropertySets

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

compound

protected Compound compound

A Compound to be used to create another Compound.

measurement

protected Measurement measurement

The amount of the Compound.

Constructor Detail

CompoundMeasurement

public CompoundMeasurement()

Default constructor.

CompoundMeasurement

public CompoundMeasurement(org.xml.sax.Attributes atts)

Attribute constructor. Looks up the attributes in the parameter and casts them from strings appropriately

Method Detail

writeMAGEML

public void writeMAGEML(java.io.Writer out)
                 throws java.io.IOException

writeMAGEML This method is responsible for assembling the attribute and association data into XML. It creates the object tag and then calls the writeAttributes and writeAssociation methods.

Overrides:

writeMAGEML in class Extendable

java.io.IOException

writeAttributes

public void writeAttributes(java.io.Writer out)
                     throws java.io.IOException

writeAttributes This method is responsible for assembling the attribute data into XML. It calls the super method to write out all attributes of this class and it's ancestors.

Overrides:

writeAttributes in class Extendable

java.io.IOException

writeAssociations

public void writeAssociations(java.io.Writer out)
                       throws java.io.IOException

writeAssociations This method is responsible for assembling the association data into XML. It calls the super method to write out all associations of this class's ancestors.

Overrides:

writeAssociations in class Extendable

java.io.IOException

setCompound

public void setCompound(Compound compound)

Set method for compound

Specified by:

setCompound in interface HasCompound

getCompound

public Compound getCompound()

Get method for compound

Specified by:

getCompound in interface HasCompound

Returns:

value of the attribute

setMeasurement

public void setMeasurement(Measurement measurement)

Set method for measurement

Specified by:

setMeasurement in interface HasMeasurement

getMeasurement

public Measurement getMeasurement()

Get method for measurement

Specified by:

getMeasurement in interface HasMeasurement

Returns:

value of the attribute