org.biomage.Protocol
Class SoftwareApplication

java.lang.Object
  |
  +--org.biomage.Common.Extendable
        |
        +--org.biomage.Common.Describable
              |
              +--org.biomage.Protocol.ParameterizableApplication
                    |
                    +--org.biomage.Protocol.SoftwareApplication

All Implemented Interfaces:

HasAuditTrail, HasDescriptions, HasParameterValues, HasPropertySets, HasSecurity, HasSoftware, java.io.Serializable

public class SoftwareApplication

extends ParameterizableApplication

implements java.io.Serializable, HasSoftware

The use of a piece of software with the requisite Parameters and ParameterValues.

See Also:

Serialized Form

Nested Class Summary

Nested classes inherited from class org.biomage.Interface.HasParameterValues

HasParameterValues.ParameterValues_list

Nested classes inherited from class org.biomage.Interface.HasAuditTrail

HasAuditTrail.AuditTrail_list

Nested classes inherited from class org.biomage.Interface.HasDescriptions

HasDescriptions.Descriptions_list

Nested classes inherited from class org.biomage.Interface.HasPropertySets

HasPropertySets.PropertySets_list

Field Summary

protected Software

software The underlying software.

Fields inherited from class org.biomage.Protocol.ParameterizableApplication

parameterValues

Fields inherited from class org.biomage.Common.Describable

auditTrail, descriptions, security

Fields inherited from class org.biomage.Common.Extendable

propertySets

Constructor Summary

SoftwareApplication()
Default constructor.

SoftwareApplication(org.xml.sax.Attributes atts)
Attribute constructor.

Method Summary

java.util.Date	getReleaseDate() Get method for releaseDate
Software	getSoftware() Get method for software
java.lang.String	getVersion() Get method for version
void	setReleaseDate(java.util.Date releaseDate) Set method for releaseDate
void	setSoftware(Software software) Set method for software
void	setVersion(java.lang.String version) Set method for version
void	writeAssociations(java.io.Writer out) writeAssociations This method is responsible for assembling the association data into XML.
void	writeAttributes(java.io.Writer out) writeAttributes This method is responsible for assembling the attribute data into XML.
void	writeMAGEML(java.io.Writer out) writeMAGEML This method is responsible for assembling the attribute and association data into XML.

Methods inherited from class org.biomage.Protocol.ParameterizableApplication

addToParameterValues, addToParameterValues, getFromParameterValues, getParameterValues, removeElementAtFromParameterValues, removeFromParameterValues, setParameterValues

Methods inherited from class org.biomage.Common.Describable

addToAuditTrail, addToAuditTrail, addToDescriptions, addToDescriptions, getAuditTrail, getDescriptions, getFromAuditTrail, getFromDescriptions, getSecurity, removeElementAtFromAuditTrail, removeElementAtFromDescriptions, removeFromAuditTrail, removeFromDescriptions, setAuditTrail, setDescriptions, setSecurity

Methods inherited from class org.biomage.Common.Extendable

addToPropertySets, addToPropertySets, getFromPropertySets, getPropertySets, removeElementAtFromPropertySets, removeFromPropertySets, setPropertySets

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

software

protected Software software

The underlying software.

Constructor Detail

SoftwareApplication

public SoftwareApplication()

Default constructor.

SoftwareApplication

public SoftwareApplication(org.xml.sax.Attributes atts)

Attribute constructor. Looks up the attributes in the parameter and casts them from strings appropriately

Method Detail

writeMAGEML

public void writeMAGEML(java.io.Writer out)
                 throws java.io.IOException

writeMAGEML This method is responsible for assembling the attribute and association data into XML. It creates the object tag and then calls the writeAttributes and writeAssociation methods.

Overrides:

writeMAGEML in class ParameterizableApplication

java.io.IOException

writeAttributes

public void writeAttributes(java.io.Writer out)
                     throws java.io.IOException

writeAttributes This method is responsible for assembling the attribute data into XML. It calls the super method to write out all attributes of this class and it's ancestors.

Overrides:

writeAttributes in class ParameterizableApplication

java.io.IOException

writeAssociations

public void writeAssociations(java.io.Writer out)
                       throws java.io.IOException

writeAssociations This method is responsible for assembling the association data into XML. It calls the super method to write out all associations of this class's ancestors.

Overrides:

writeAssociations in class ParameterizableApplication

java.io.IOException

setVersion

public void setVersion(java.lang.String version)

Set method for version

getVersion

public java.lang.String getVersion()

Get method for version

Returns:

value of the attribute

setReleaseDate

public void setReleaseDate(java.util.Date releaseDate)

Set method for releaseDate

getReleaseDate

public java.util.Date getReleaseDate()

Get method for releaseDate

Returns:

value of the attribute

setSoftware

public void setSoftware(Software software)

Set method for software

Specified by:

setSoftware in interface HasSoftware

getSoftware

public Software getSoftware()

Get method for software

Specified by:

getSoftware in interface HasSoftware

Returns:

value of the attribute